Wall clock time and date at job start Tue Mar 31 2020 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.35157 * 125.48733 * 2 1 4 4 C 1.40319 * 107.20494 * 179.72203 * 3 2 1 5 5 C 1.37947 * 106.52837 * 0.40957 * 4 3 2 6 6 C 1.41605 * 126.10324 * 179.84546 * 5 4 3 7 7 C 1.35625 * 120.00195 * 179.71744 * 6 5 4 8 8 C 1.41548 * 120.00052 * 180.02562 * 7 6 5 9 9 O 1.21779 * 120.00298 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00098 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99998 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46760 * 269.99260 * 11 10 8 13 13 H 1.08002 * 119.99985 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99954 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99995 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99929 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47110 * 89.99866 * 16 14 12 18 18 H 1.48499 * 109.47496 * 209.99715 * 16 14 12 19 19 H 1.48495 * 109.47532 * 330.00302 * 16 14 12 20 20 C 1.46497 * 119.99987 * 359.97438 * 10 8 7 21 21 C 1.53003 * 109.47329 * 270.00533 * 20 10 8 22 22 C 1.53001 * 117.51964 * 116.28255 * 21 20 10 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 20 24 24 O 1.34020 * 125.47952 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47687 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47197 * 300.00184 * 1 2 3 27 27 H 1.08999 * 109.47231 * 59.99861 * 1 2 3 28 28 H 1.07998 * 126.39244 * 359.97438 * 3 2 1 29 29 H 1.07999 * 126.73153 * 180.27829 * 4 3 2 30 30 H 1.07997 * 120.00114 * 359.72160 * 6 5 4 31 31 H 1.08005 * 119.99866 * 0.02562 * 7 6 5 32 32 H 1.08998 * 109.47531 * 29.99334 * 11 10 8 33 33 H 1.09000 * 109.47050 * 150.00101 * 11 10 8 34 34 H 0.97000 * 119.99728 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47381 * 150.00018 * 20 10 8 36 36 H 1.09005 * 109.46933 * 30.00197 * 20 10 8 37 37 H 1.09002 * 115.54973 * 330.58039 * 21 20 10 38 38 H 1.09001 * 117.49733 * 214.97413 * 22 21 20 39 39 H 1.08995 * 117.49577 * 359.97438 * 22 21 20 40 40 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 41 41 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2915 1.1005 0.0000 4 6 3.6238 0.6603 0.0065 5 6 3.5817 -0.7185 0.0008 6 6 4.6997 -1.5875 0.0012 7 6 4.5144 -2.9310 0.0009 8 6 5.6320 -3.7996 0.0018 9 8 6.7600 -3.3406 0.0024 10 7 5.4478 -5.1348 0.0010 11 6 6.6046 -6.0338 0.0025 12 6 7.0034 -6.3416 -1.4179 13 1 6.4507 -5.9103 -2.2394 14 6 8.0737 -7.1738 -1.6685 15 7 8.4220 -7.4420 -2.9079 16 14 9.0291 -7.9202 -0.2475 17 1 8.4225 -9.2231 0.1267 18 1 10.4410 -8.1309 -0.6566 19 1 8.9833 -7.0004 0.9174 20 6 4.0909 -5.6870 -0.0003 21 6 3.6174 -5.8799 1.4417 22 6 2.4154 -5.0557 1.9073 23 6 2.2621 -6.5570 1.6557 24 8 2.2847 -1.0914 0.0005 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9556 2.1269 -0.0004 29 1 4.5086 1.2796 0.0125 30 1 5.7000 -1.1804 0.0018 31 1 3.5140 -3.3381 -0.0001 32 1 7.4368 -5.5543 0.5178 33 1 6.3445 -6.9597 0.5155 34 1 9.1753 -8.0271 -3.0842 35 1 4.0903 -6.6481 -0.5146 36 1 3.4193 -4.9994 -0.5144 37 1 4.4018 -6.0823 2.1710 38 1 2.4091 -4.7157 2.9430 39 1 1.9621 -4.3754 1.1864 40 1 1.7077 -6.8647 0.7690 41 1 2.1549 -7.2048 2.5257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264074013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:06 Heat of formation + Delta-G solvation = 4.050841 kcal Electronic energy + Delta-G solvation = -22511.491061 eV Core-core repulsion = 19165.822236 eV Total energy + Delta-G solvation = -3345.668824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.55421 -41.06062 -38.45929 -36.32426 -35.29199 -34.59764 -34.22520 -32.21950 -30.56088 -28.25876 -27.41851 -25.06500 -23.21186 -23.10066 -22.83539 -21.88156 -21.06661 -19.56965 -19.08927 -18.69268 -17.51965 -17.26183 -16.91097 -16.42939 -16.03058 -15.85961 -15.43919 -14.99027 -14.87166 -14.44245 -14.13705 -13.88694 -13.87212 -13.78648 -13.68025 -13.50739 -13.14557 -12.95948 -12.70249 -12.60418 -12.35891 -12.30273 -12.07497 -11.78980 -11.63113 -11.28557 -11.05883 -10.83132 -10.74916 -10.66581 -9.50314 -8.80064 -8.35032 -6.40341 -0.57175 1.12012 1.30780 1.35349 1.46654 1.71277 1.88836 2.27000 2.30786 2.50732 2.94806 2.98726 3.59867 3.80582 3.88030 3.96287 3.99202 4.02927 4.12136 4.25942 4.31294 4.52171 4.64421 4.68434 4.69995 4.76282 4.77651 4.82185 4.83609 4.90777 4.94404 5.04779 5.13430 5.17792 5.27591 5.28946 5.31010 5.44261 5.58124 5.61473 6.11917 6.22900 6.60138 6.64491 7.19032 7.35734 8.82122 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.004073 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.915755 B = 6872.902927 C = 7840.105591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.006 3.994 3 C -0.226 4.226 4 C -0.153 4.153 5 C -0.041 4.041 6 C 0.016 3.984 7 C -0.214 4.214 8 C 0.535 3.465 9 O -0.600 6.600 10 N -0.591 5.591 11 C 0.227 3.773 12 C -0.538 4.538 13 H 0.027 0.973 14 C 0.012 3.988 15 N -0.944 5.944 16 Si 0.949 3.051 17 H -0.250 1.250 18 H -0.279 1.279 19 H -0.257 1.257 20 C 0.140 3.860 21 C -0.190 4.190 22 C -0.168 4.168 23 C -0.156 4.156 24 O -0.179 6.179 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.181 0.819 29 H 0.172 0.828 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.021 0.979 33 H 0.047 0.953 34 H 0.269 0.731 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.699 13.396 10.917 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 C -0.245 4.245 4 C -0.172 4.172 5 C -0.089 4.089 6 C -0.004 4.004 7 C -0.234 4.234 8 C 0.328 3.672 9 O -0.485 6.485 10 N -0.320 5.320 11 C 0.104 3.896 12 C -0.576 4.576 13 H 0.045 0.955 14 C -0.186 4.186 15 N -0.585 5.585 16 Si 0.771 3.229 17 H -0.174 1.174 18 H -0.205 1.205 19 H -0.181 1.181 20 C 0.017 3.983 21 C -0.210 4.210 22 C -0.205 4.205 23 C -0.194 4.194 24 O -0.076 6.076 25 H 0.099 0.901 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.198 0.802 29 H 0.190 0.810 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.107 13.165 10.803 26.350 hybrid contribution 1.235 -0.482 -0.121 1.331 sum -18.873 12.683 10.682 25.122 Atomic orbital electron populations 1.20616 0.81993 1.05175 1.05610 1.23638 0.95881 0.83627 1.01435 1.21875 0.91827 1.00916 1.09882 1.22729 1.00034 0.92554 1.01853 1.19715 0.81884 0.93986 1.13306 1.20676 0.96006 0.92066 0.91692 1.22093 0.98929 0.94112 1.08303 1.17522 0.89638 0.83115 0.76889 1.90747 1.27482 1.76823 1.53434 1.47850 1.07935 1.05597 1.70584 1.19307 0.85340 0.89484 0.95428 1.21538 1.15128 1.28723 0.92219 0.95470 1.25848 0.97579 0.96427 0.98723 1.70051 1.28990 1.38117 1.21293 0.85698 0.78113 0.79745 0.79346 1.17433 1.20472 1.18094 1.21266 0.81621 0.99906 0.95474 1.22667 0.92818 1.08412 0.97060 1.23087 1.00220 0.94434 1.02713 1.23036 0.96951 0.95239 1.04137 1.84042 1.16341 1.36024 1.71198 0.90100 0.87284 0.87530 0.80197 0.81022 0.83017 0.83590 0.96081 0.93526 0.92185 0.90395 0.89382 0.88963 0.88209 0.88215 0.87594 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.41 71.23 0.74 0.09 16 2 C 0.01 0.10 7.30 24.97 0.18 0.28 16 3 C -0.23 -3.78 10.76 22.07 0.24 -3.54 16 4 C -0.15 -3.19 10.90 22.71 0.25 -2.94 16 5 C -0.04 -1.06 6.84 23.03 0.16 -0.91 16 6 C 0.02 0.49 9.39 22.50 0.21 0.70 16 7 C -0.21 -7.46 8.68 22.48 0.20 -7.26 16 8 C 0.53 24.19 7.44 85.06 0.63 24.82 16 9 O -0.60 -32.24 15.69 -4.60 -0.07 -32.32 16 10 N -0.59 -26.31 2.46 -836.81 -2.06 -28.37 16 11 C 0.23 11.72 4.23 85.63 0.36 12.08 16 12 C -0.54 -33.01 9.94 25.60 0.25 -32.75 16 13 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 14 C 0.01 0.75 5.47 84.65 0.46 1.21 16 15 N -0.94 -61.05 13.96 21.45 0.30 -60.75 16 16 Si 0.95 45.70 27.47 68.60 1.88 47.59 16 17 H -0.25 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 20 C 0.14 4.74 5.37 86.38 0.46 5.20 16 21 C -0.19 -5.19 6.01 -10.79 -0.06 -5.26 16 22 C -0.17 -3.52 9.86 30.59 0.30 -3.22 16 23 C -0.16 -3.13 10.25 30.60 0.31 -2.81 16 24 O -0.18 -4.36 10.18 -6.20 -0.06 -4.42 16 25 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.15 4.84 7.46 -2.91 -0.02 4.82 16 31 H 0.15 4.38 4.78 -2.91 -0.01 4.36 16 32 H 0.02 1.18 6.48 -2.39 -0.02 1.16 16 33 H 0.05 2.20 7.50 -2.39 -0.02 2.18 16 34 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 35 H 0.08 2.77 8.07 -2.39 -0.02 2.75 16 36 H 0.09 2.64 5.82 -2.38 -0.01 2.63 16 37 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.10 1.97 7.41 -2.39 -0.02 1.96 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -80.69 350.34 5.66 -75.03 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.97 Total: 17.53 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 4.70 Total: -14.30 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -1.76 Total: -89.11 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.14 Total: -36.74 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.59 kcal Total: -80.69 5.66 -75.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264074013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.084 kcal (2) G-P(sol) polarization free energy of solvation -80.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds