Wall clock time and date at job start Tue Mar 31 2020 05:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 110.01612 * 2 1 4 4 C 1.34779 * 120.00142 * 59.30078 * 3 2 1 5 5 O 1.21593 * 119.99924 * 359.97438 * 4 3 2 6 6 C 1.47530 * 119.99617 * 179.72775 * 4 3 2 7 7 C 1.39657 * 120.20328 * 359.97438 * 6 4 3 8 8 C 1.37834 * 119.92441 * 179.77162 * 7 6 4 9 9 C 1.38579 * 120.31781 * 0.53485 * 8 7 6 10 10 C 1.38023 * 120.40215 * 359.70046 * 9 8 7 11 11 C 1.38838 * 120.07206 * 0.03985 * 10 9 8 12 12 O 1.35518 * 120.15930 * 179.97438 * 11 10 9 13 13 C 1.34813 * 117.00198 * 354.40023 * 12 11 10 14 14 H 1.08004 * 120.00224 * 5.07050 * 13 12 11 15 15 C 1.38696 * 120.00550 * 185.06299 * 13 12 11 16 16 N 1.31527 * 119.99669 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00553 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46926 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47311 * 119.99860 * 17 15 13 20 20 H 1.48500 * 109.46841 * 239.99946 * 17 15 13 21 21 C 1.53873 * 110.03331 * 121.39349 * 2 1 3 22 22 C 1.54366 * 106.54530 * 119.34706 * 21 2 1 23 23 C 1.54884 * 104.21785 * 23.57287 * 22 21 2 24 24 C 1.54268 * 110.02767 * 238.60993 * 2 1 3 25 25 H 1.09000 * 109.47650 * 60.70049 * 1 2 3 26 26 H 1.09003 * 109.47477 * 180.70398 * 1 2 3 27 27 H 1.09003 * 109.46884 * 300.70197 * 1 2 3 28 28 H 0.97000 * 119.99598 * 239.30378 * 3 2 1 29 29 H 1.08001 * 120.03844 * 0.02562 * 7 6 4 30 30 H 1.07998 * 119.83982 * 180.25838 * 8 7 6 31 31 H 1.07995 * 119.79630 * 179.72497 * 9 8 7 32 32 H 1.07999 * 119.96310 * 180.02562 * 10 9 8 33 33 H 0.97000 * 120.00069 * 180.02562 * 16 15 13 34 34 H 1.09000 * 110.02705 * 238.61819 * 21 2 1 35 35 H 1.08999 * 110.03104 * 0.04241 * 21 2 1 36 36 H 1.09004 * 110.46231 * 264.89227 * 22 21 2 37 37 H 1.09000 * 110.49033 * 142.26533 * 22 21 2 38 38 H 1.09006 * 110.75748 * 203.76024 * 23 22 21 39 39 H 1.08998 * 110.75869 * 80.39119 * 23 22 21 40 40 H 1.08996 * 110.48577 * 335.73172 * 24 2 1 41 41 H 1.09002 * 110.48500 * 98.24926 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0314 1.3765 0.0000 4 6 1.7022 2.2137 1.0036 5 8 0.9886 1.8266 1.9088 6 6 2.2121 3.5980 1.0066 7 6 3.0367 4.0453 -0.0281 8 6 3.5060 5.3412 -0.0219 9 6 3.1728 6.2011 1.0125 10 6 2.3628 5.7716 2.0443 11 6 1.8765 4.4712 2.0519 12 8 1.0815 4.0475 3.0643 13 6 0.8939 4.8989 4.0926 14 1 1.3002 5.8986 4.0470 15 6 0.1790 4.4913 5.2090 16 7 -0.3154 3.2738 5.2648 17 14 -0.0815 5.6713 6.6335 18 1 0.5705 6.9696 6.3264 19 1 -1.5366 5.8842 6.8402 20 1 0.5149 5.0978 7.8667 21 6 2.0571 -0.7530 1.2340 22 6 2.8890 -1.9398 0.7026 23 6 3.3143 -1.4994 -0.7201 24 6 2.0583 -0.7549 -1.2373 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0126 27 1 -0.3633 0.5247 0.8837 28 1 2.6004 1.6854 -0.7224 29 1 3.3029 3.3777 -0.8342 30 1 4.1402 5.6869 -0.8249 31 1 3.5489 7.2134 1.0111 32 1 2.1073 6.4478 2.8467 33 1 -0.8157 2.9888 6.0454 34 1 2.6860 -0.0943 1.8328 35 1 1.2229 -1.1192 1.8325 36 1 2.2793 -2.8422 0.6563 37 1 3.7657 -2.1023 1.3296 38 1 3.5335 -2.3663 -1.3436 39 1 4.1712 -0.8272 -0.6765 40 1 1.3144 -1.4659 -1.5967 41 1 2.3266 -0.0528 -2.0267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264082942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:26 Heat of formation + Delta-G solvation = -43.265657 kcal Electronic energy + Delta-G solvation = -23424.100932 eV Core-core repulsion = 20076.380310 eV Total energy + Delta-G solvation = -3347.720622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97234 -38.84187 -36.97648 -36.26645 -33.09399 -32.31007 -30.94598 -29.27160 -28.86108 -28.66698 -25.39120 -24.79566 -23.08495 -21.51533 -20.78247 -20.13631 -18.78923 -17.97265 -17.49693 -16.12475 -15.94157 -15.01060 -14.66971 -14.47713 -14.19223 -14.10564 -13.90871 -13.63891 -13.38189 -13.11942 -12.79838 -12.59210 -12.44439 -11.79680 -11.69999 -11.46123 -11.27829 -11.09610 -11.08358 -10.94741 -10.90515 -10.79797 -10.76646 -10.52085 -10.42849 -10.35501 -9.50599 -8.86551 -8.64610 -8.41728 -8.23570 -7.28135 -6.42670 -4.02332 1.75440 2.34089 3.12639 3.13591 3.19197 3.77182 3.81146 3.94950 4.58487 4.65284 4.75780 4.93516 5.09256 5.20217 5.41687 5.45087 5.53781 5.58142 5.58567 5.64637 5.70581 5.78379 5.80537 5.93342 5.99109 6.05055 6.11283 6.15481 6.22057 6.28435 6.44447 6.58948 6.62702 6.71959 6.75082 6.95243 7.08601 7.20973 7.26999 7.32080 7.72056 7.94654 8.24998 8.97397 9.20961 9.70284 10.71197 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.005297 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.917200 B = 5284.613055 C = 6617.040482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.178 3.822 3 N -0.735 5.735 4 C 0.555 3.445 5 O -0.496 6.496 6 C -0.226 4.226 7 C -0.039 4.039 8 C -0.231 4.231 9 C -0.052 4.052 10 C -0.239 4.239 11 C 0.189 3.811 12 O -0.124 6.124 13 C -0.403 4.403 14 H 0.094 0.906 15 C 0.045 3.955 16 N -0.832 5.832 17 Si 0.940 3.060 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.124 4.124 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.389 0.611 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.270 0.730 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -4.864 -11.565 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.092 3.908 3 N -0.391 5.391 4 C 0.344 3.656 5 O -0.370 6.370 6 C -0.231 4.231 7 C -0.058 4.058 8 C -0.250 4.250 9 C -0.070 4.070 10 C -0.258 4.258 11 C 0.129 3.871 12 O -0.022 6.022 13 C -0.479 4.479 14 H 0.111 0.889 15 C -0.163 4.163 16 N -0.464 5.464 17 Si 0.764 3.236 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.162 4.162 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.223 0.777 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.450 -5.534 -10.626 13.162 hybrid contribution 0.240 0.934 0.281 1.005 sum 5.691 -4.599 -10.345 12.671 Atomic orbital electron populations 1.22261 0.94446 1.01628 1.03626 1.20773 0.93885 0.81594 0.94517 1.46143 1.54529 1.11545 1.26886 1.18171 0.80775 0.84929 0.81718 1.90907 1.35200 1.76398 1.34472 1.18928 1.10392 0.94166 0.99639 1.20762 0.94277 0.95439 0.95345 1.20458 1.08358 0.94809 1.01412 1.20886 0.94934 0.98230 0.92998 1.21159 1.05700 0.96727 1.02218 1.19289 0.88050 0.91139 0.88581 1.84174 1.52564 1.40990 1.24451 1.21532 1.36359 0.95451 0.94571 0.88911 1.25370 0.95965 0.96918 0.98044 1.70141 1.30820 1.16426 1.29011 0.85675 0.78548 0.79380 0.79971 1.18998 1.20043 1.20044 1.22526 0.99996 0.96375 0.97212 1.22406 0.99578 0.98210 0.96084 1.22494 0.97555 0.99616 0.96467 1.22669 0.97841 0.99109 0.96617 0.93190 0.92525 0.89650 0.77659 0.87133 0.87361 0.87262 0.85140 0.91982 0.90943 0.91028 0.91862 0.91879 0.91754 0.91478 0.90430 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.07 37.16 0.30 -2.25 16 2 C 0.18 2.63 0.94 -130.70 -0.12 2.51 16 3 N -0.74 -11.99 5.02 -47.60 -0.24 -12.23 16 4 C 0.55 12.06 6.90 -12.47 -0.09 11.98 16 5 O -0.50 -13.14 12.36 -16.57 -0.20 -13.34 16 6 C -0.23 -4.93 5.89 -104.82 -0.62 -5.55 16 7 C -0.04 -0.68 9.53 -39.20 -0.37 -1.06 16 8 C -0.23 -3.84 10.03 -39.60 -0.40 -4.23 16 9 C -0.05 -0.93 10.03 -39.53 -0.40 -1.32 16 10 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 11 C 0.19 4.72 6.66 -38.60 -0.26 4.46 16 12 O -0.12 -3.65 7.84 -21.05 -0.16 -3.81 16 13 C -0.40 -11.45 9.49 30.90 0.29 -11.16 16 14 H 0.09 2.41 5.21 -52.48 -0.27 2.13 16 15 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 16 N -0.83 -25.11 13.67 55.48 0.76 -24.35 16 17 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 C -0.12 -1.93 5.32 -25.56 -0.14 -2.06 16 22 C -0.13 -1.48 6.83 -25.02 -0.17 -1.65 16 23 C -0.12 -1.26 6.91 -24.74 -0.17 -1.44 16 24 C -0.12 -1.35 6.01 -25.07 -0.15 -1.50 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.72 6.14 -51.93 -0.32 1.40 16 28 H 0.39 5.18 6.27 -40.82 -0.26 4.92 16 29 H 0.11 1.48 6.40 -52.49 -0.34 1.15 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.07 1.35 7.29 -51.93 -0.38 0.97 16 35 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 41 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -33.35 330.50 -8.22 -41.57 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.58 Total: 9.24 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.74 Total: -17.67 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.52 Total: -36.58 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.37 Total: -17.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.35 -8.22 -41.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.696 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds