Wall clock time and date at job start Tue Mar 31 2020 05:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 110.01612 * 2 1 4 4 C 1.34779 * 120.00142 * 59.30078 * 3 2 1 5 5 O 1.21593 * 119.99924 * 359.97438 * 4 3 2 6 6 C 1.47530 * 119.99617 * 179.72775 * 4 3 2 7 7 C 1.39657 * 120.20328 * 359.97438 * 6 4 3 8 8 C 1.37834 * 119.92441 * 179.77162 * 7 6 4 9 9 C 1.38579 * 120.31781 * 0.53485 * 8 7 6 10 10 C 1.38023 * 120.40215 * 359.70046 * 9 8 7 11 11 C 1.38838 * 120.07206 * 0.03985 * 10 9 8 12 12 O 1.35518 * 120.15930 * 179.97438 * 11 10 9 13 13 C 1.34813 * 117.00198 * 354.40023 * 12 11 10 14 14 H 1.08004 * 120.00224 * 5.07050 * 13 12 11 15 15 C 1.38696 * 120.00550 * 185.06299 * 13 12 11 16 16 N 1.31527 * 119.99669 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00553 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46926 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47311 * 119.99860 * 17 15 13 20 20 H 1.48500 * 109.46841 * 239.99946 * 17 15 13 21 21 C 1.53873 * 110.03331 * 121.39349 * 2 1 3 22 22 C 1.54366 * 106.54530 * 119.34706 * 21 2 1 23 23 C 1.54884 * 104.21785 * 23.57287 * 22 21 2 24 24 C 1.54268 * 110.02767 * 238.60993 * 2 1 3 25 25 H 1.09000 * 109.47650 * 60.70049 * 1 2 3 26 26 H 1.09003 * 109.47477 * 180.70398 * 1 2 3 27 27 H 1.09003 * 109.46884 * 300.70197 * 1 2 3 28 28 H 0.97000 * 119.99598 * 239.30378 * 3 2 1 29 29 H 1.08001 * 120.03844 * 0.02562 * 7 6 4 30 30 H 1.07998 * 119.83982 * 180.25838 * 8 7 6 31 31 H 1.07995 * 119.79630 * 179.72497 * 9 8 7 32 32 H 1.07999 * 119.96310 * 180.02562 * 10 9 8 33 33 H 0.97000 * 120.00069 * 180.02562 * 16 15 13 34 34 H 1.09000 * 110.02705 * 238.61819 * 21 2 1 35 35 H 1.08999 * 110.03104 * 0.04241 * 21 2 1 36 36 H 1.09004 * 110.46231 * 264.89227 * 22 21 2 37 37 H 1.09000 * 110.49033 * 142.26533 * 22 21 2 38 38 H 1.09006 * 110.75748 * 203.76024 * 23 22 21 39 39 H 1.08998 * 110.75869 * 80.39119 * 23 22 21 40 40 H 1.08996 * 110.48577 * 335.73172 * 24 2 1 41 41 H 1.09002 * 110.48500 * 98.24926 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0314 1.3765 0.0000 4 6 1.7022 2.2137 1.0036 5 8 0.9886 1.8266 1.9088 6 6 2.2121 3.5980 1.0066 7 6 3.0367 4.0453 -0.0281 8 6 3.5060 5.3412 -0.0219 9 6 3.1728 6.2011 1.0125 10 6 2.3628 5.7716 2.0443 11 6 1.8765 4.4712 2.0519 12 8 1.0815 4.0475 3.0643 13 6 0.8939 4.8989 4.0926 14 1 1.3002 5.8986 4.0470 15 6 0.1790 4.4913 5.2090 16 7 -0.3154 3.2738 5.2648 17 14 -0.0815 5.6713 6.6335 18 1 0.5705 6.9696 6.3264 19 1 -1.5366 5.8842 6.8402 20 1 0.5149 5.0978 7.8667 21 6 2.0571 -0.7530 1.2340 22 6 2.8890 -1.9398 0.7026 23 6 3.3143 -1.4994 -0.7201 24 6 2.0583 -0.7549 -1.2373 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0126 27 1 -0.3633 0.5247 0.8837 28 1 2.6004 1.6854 -0.7224 29 1 3.3029 3.3777 -0.8342 30 1 4.1402 5.6869 -0.8249 31 1 3.5489 7.2134 1.0111 32 1 2.1073 6.4478 2.8467 33 1 -0.8157 2.9888 6.0454 34 1 2.6860 -0.0943 1.8328 35 1 1.2229 -1.1192 1.8325 36 1 2.2793 -2.8422 0.6563 37 1 3.7657 -2.1023 1.3296 38 1 3.5335 -2.3663 -1.3436 39 1 4.1712 -0.8272 -0.6765 40 1 1.3144 -1.4659 -1.5967 41 1 2.3266 -0.0528 -2.0267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264082942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:26 Heat of formation + Delta-G solvation = -65.496868 kcal Electronic energy + Delta-G solvation = -23425.064950 eV Core-core repulsion = 20076.380310 eV Total energy + Delta-G solvation = -3348.684639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50496 -40.40808 -38.51488 -37.94134 -34.57177 -34.29046 -32.38705 -30.69164 -30.50482 -29.70713 -27.38607 -26.03394 -24.61435 -23.18002 -21.89766 -21.48531 -20.24876 -19.74680 -19.17064 -17.82161 -17.20619 -16.39029 -16.24430 -16.08799 -15.83068 -15.71119 -15.33186 -15.12010 -14.97846 -14.39749 -14.25284 -14.19322 -13.85915 -13.55331 -13.19850 -12.97805 -12.66124 -12.59918 -12.50132 -12.33211 -12.11234 -12.06402 -11.96205 -11.88535 -11.66890 -11.43323 -11.35799 -10.84728 -10.35921 -9.97910 -9.74933 -9.02536 -8.44923 -6.15649 0.15285 0.73166 1.30954 1.41652 1.50810 2.14823 2.17211 2.36194 2.88473 3.23805 3.48173 3.54757 3.72169 3.93047 4.03906 4.09141 4.28476 4.33218 4.45023 4.51502 4.52748 4.56731 4.66589 4.74717 4.83527 4.90544 4.92244 4.99760 5.07541 5.09461 5.13160 5.14950 5.23566 5.34459 5.38894 5.48282 5.50908 5.62375 5.69988 5.83736 5.96377 6.17931 6.82812 6.94639 7.61798 7.81350 8.75719 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.005297 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.917200 B = 5284.613055 C = 6617.040482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.170 3.830 3 N -0.711 5.711 4 C 0.547 3.453 5 O -0.556 6.556 6 C -0.245 4.245 7 C -0.031 4.031 8 C -0.201 4.201 9 C -0.042 4.042 10 C -0.259 4.259 11 C 0.147 3.853 12 O -0.188 6.188 13 C -0.427 4.427 14 H 0.105 0.895 15 C -0.022 4.022 16 N -0.905 5.905 17 Si 1.022 2.978 18 H -0.246 1.246 19 H -0.268 1.268 20 H -0.269 1.269 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.112 4.112 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.029 0.971 28 H 0.408 0.592 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.121 0.879 33 H 0.270 0.730 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 -3.970 -15.824 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.084 3.916 3 N -0.366 5.366 4 C 0.336 3.664 5 O -0.434 6.434 6 C -0.250 4.250 7 C -0.050 4.050 8 C -0.219 4.219 9 C -0.060 4.060 10 C -0.278 4.278 11 C 0.092 3.908 12 O -0.091 6.091 13 C -0.503 4.503 14 H 0.122 0.878 15 C -0.221 4.221 16 N -0.541 5.541 17 Si 0.840 3.160 18 H -0.169 1.169 19 H -0.193 1.193 20 H -0.194 1.194 21 C -0.164 4.164 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.150 4.150 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.246 0.754 29 H 0.177 0.823 30 H 0.181 0.819 31 H 0.170 0.830 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.536 -4.618 -14.993 17.860 hybrid contribution -0.460 0.691 1.222 1.478 sum 8.076 -3.927 -13.771 16.440 Atomic orbital electron populations 1.22203 0.95582 1.02365 1.01460 1.21047 0.93191 0.80868 0.96456 1.45925 1.53493 1.11593 1.25623 1.18457 0.80167 0.85720 0.82007 1.90906 1.37918 1.77503 1.37093 1.19424 1.11203 0.94097 1.00271 1.21313 0.92042 0.96932 0.94688 1.21176 1.05938 0.93551 1.01236 1.21419 0.92674 1.00495 0.91462 1.21295 1.07210 0.95477 1.03850 1.20109 0.88667 0.93299 0.88724 1.84180 1.56192 1.42432 1.26250 1.22056 1.36831 0.96094 0.95279 0.87757 1.26741 0.95416 0.98896 1.01082 1.70337 1.33929 1.19461 1.30366 0.84511 0.78729 0.77273 0.75477 1.16885 1.19340 1.19424 1.22490 0.99041 0.97627 0.97250 1.22400 0.99060 0.96778 0.97485 1.22499 0.97079 1.00700 0.95014 1.22662 0.98406 0.99347 0.94590 0.91891 0.90306 0.95181 0.75419 0.82256 0.81853 0.82972 0.86107 0.92136 0.95096 0.93818 0.90291 0.91809 0.88674 0.91302 0.88503 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 8.07 71.98 0.58 -4.57 16 2 C 0.17 4.95 0.94 4.33 0.00 4.95 16 3 N -0.71 -22.76 5.02 -422.77 -2.12 -24.88 16 4 C 0.55 25.01 6.90 86.69 0.60 25.60 16 5 O -0.56 -32.57 12.36 16.89 0.21 -32.36 16 6 C -0.25 -10.83 5.89 -19.99 -0.12 -10.94 16 7 C -0.03 -0.96 9.53 22.52 0.21 -0.75 16 8 C -0.20 -5.45 10.03 22.26 0.22 -5.23 16 9 C -0.04 -1.35 10.03 22.30 0.22 -1.13 16 10 C -0.26 -11.33 9.16 22.36 0.20 -11.12 16 11 C 0.15 7.73 6.66 22.91 0.15 7.88 16 12 O -0.19 -12.14 7.84 0.87 0.01 -12.13 16 13 C -0.43 -26.25 9.49 67.93 0.64 -25.61 16 14 H 0.11 5.79 5.21 -2.91 -0.02 5.78 16 15 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 16 N -0.90 -60.03 13.67 21.62 0.30 -59.73 16 17 Si 1.02 45.04 29.55 68.60 2.03 47.07 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 C -0.13 -4.16 5.32 31.35 0.17 -3.99 16 22 C -0.12 -2.67 6.83 31.70 0.22 -2.45 16 23 C -0.12 -1.89 6.91 31.88 0.22 -1.67 16 24 C -0.11 -1.98 6.01 31.67 0.19 -1.79 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.03 1.32 6.14 -2.39 -0.01 1.30 16 28 H 0.41 9.48 6.27 -92.71 -0.58 8.90 16 29 H 0.16 3.27 6.40 -2.91 -0.02 3.25 16 30 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.12 5.38 5.64 -2.91 -0.02 5.37 16 33 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 34 H 0.03 1.25 7.29 -2.39 -0.02 1.23 16 35 H 0.04 1.63 7.67 -2.39 -0.02 1.61 16 36 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.43 7.85 -2.39 -0.02 1.41 16 41 H 0.09 1.25 7.73 -2.39 -0.02 1.24 16 Total: -1.00 -87.97 330.50 4.87 -83.10 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.47 Total: 30.64 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.99 Total: -31.70 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.83 Total: -84.61 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: 0.22 Total: -44.50 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -87.97 4.87 -83.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.602 kcal (2) G-P(sol) polarization free energy of solvation -87.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds