Wall clock time and date at job start Tue Mar 31 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.99806 * 2 1 4 4 C 1.38231 * 119.99908 * 179.97438 * 3 2 1 5 5 C 1.38241 * 120.00080 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99835 * 180.02562 * 5 4 3 7 7 C 1.50710 * 109.53858 * 245.03142 * 6 5 4 8 8 O 1.21289 * 119.99448 * 246.07177 * 7 6 5 9 9 N 1.34768 * 119.99767 * 66.07233 * 7 6 5 10 10 C 1.37105 * 119.99873 * 175.07161 * 9 7 6 11 11 H 1.08004 * 119.99400 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00185 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99998 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00034 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47001 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46584 * 119.99743 * 14 12 10 17 17 H 1.48498 * 109.46950 * 240.00151 * 14 12 10 18 18 C 1.53178 * 109.62005 * 5.25250 * 6 5 4 19 19 C 1.53087 * 109.16585 * 176.89639 * 18 6 5 20 20 O 1.42906 * 109.41541 * 302.39299 * 19 18 6 21 21 C 1.42901 * 114.09987 * 61.15221 * 20 19 18 22 22 C 1.53093 * 109.41594 * 298.85012 * 21 20 19 23 23 C 1.38229 * 119.99833 * 0.26816 * 5 4 3 24 24 C 1.38233 * 120.00121 * 359.52207 * 23 5 4 25 25 H 1.09002 * 109.47201 * 90.00220 * 1 2 3 26 26 H 1.09004 * 109.47034 * 209.99782 * 1 2 3 27 27 H 1.08997 * 109.47112 * 329.99416 * 1 2 3 28 28 H 1.07998 * 120.00001 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.00114 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00475 * 355.35104 * 9 7 6 31 31 H 0.97000 * 120.00124 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.51772 * 296.80089 * 18 6 5 33 33 H 1.09002 * 109.52085 * 56.98721 * 18 6 5 34 34 H 1.08992 * 109.48437 * 182.41108 * 19 18 6 35 35 H 1.09001 * 109.49310 * 62.37679 * 19 18 6 36 36 H 1.08996 * 109.48261 * 178.86249 * 21 20 19 37 37 H 1.09007 * 109.48687 * 58.83319 * 21 20 19 38 38 H 1.08995 * 109.52202 * 297.69378 * 22 21 20 39 39 H 1.09004 * 109.51791 * 177.50943 * 22 21 20 40 40 H 1.07999 * 120.00212 * 179.73313 * 23 5 4 41 41 H 1.08009 * 120.00329 * 180.27689 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0001 0.0028 7 6 6.2837 -0.6000 -1.2841 8 8 6.8881 -1.6514 -1.2667 9 7 6.0638 0.0318 -2.4541 10 6 6.6090 -0.4603 -3.6119 11 1 7.2151 -1.3539 -3.5861 12 6 6.3828 0.1913 -4.8181 13 7 5.6467 1.2794 -4.8491 14 14 7.1263 -0.4787 -6.3954 15 1 7.9077 -1.7046 -6.0925 16 1 6.0404 -0.8084 -7.3532 17 1 8.0211 0.5440 -6.9942 18 6 6.2928 1.4370 0.1346 19 6 7.8216 1.4186 0.2127 20 8 8.2311 0.6099 1.3175 21 6 7.8192 -0.7554 1.2256 22 6 6.2903 -0.8242 1.1880 23 6 3.5806 -1.1971 -0.0035 24 6 2.1982 -1.1971 0.0004 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6581 2.1325 -0.0004 29 1 4.1205 2.1325 0.0010 30 1 5.5232 0.8368 -2.4765 31 1 5.4890 1.7345 -5.6911 32 1 5.9794 2.0171 -0.7335 33 1 5.8872 1.8873 1.0406 34 1 8.1909 2.4349 0.3497 35 1 8.2280 1.0054 -0.7104 36 1 8.1867 -1.3051 2.0920 37 1 8.2253 -1.1973 0.3156 38 1 5.8846 -0.4197 2.1153 39 1 5.9751 -1.8614 1.0734 40 1 4.1205 -2.1324 -0.0070 41 1 1.6582 -2.1325 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264713213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:45 Heat of formation + Delta-G solvation = -71.413902 kcal Electronic energy + Delta-G solvation = -23983.084831 eV Core-core repulsion = 20634.143610 eV Total energy + Delta-G solvation = -3348.941221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51852 -38.52655 -37.25234 -34.43793 -34.04719 -31.57736 -31.26051 -30.88213 -30.16670 -27.14173 -25.38201 -23.93049 -23.65577 -21.86453 -21.11625 -20.75595 -18.44401 -17.78348 -16.71039 -15.95615 -15.58804 -15.11649 -14.95552 -14.83052 -14.45712 -14.11324 -13.94072 -13.63125 -13.51692 -13.22231 -13.02100 -12.91920 -12.20263 -12.16764 -11.90092 -11.78212 -11.65540 -11.38672 -11.15023 -11.02013 -10.88519 -10.73889 -10.37855 -10.30164 -10.06217 -10.01786 -9.54297 -9.19084 -8.61445 -8.55355 -8.01027 -7.96063 -6.46052 -3.86667 1.60353 1.71077 3.12542 3.24006 3.30761 3.79589 4.01121 4.14371 4.29013 4.76163 4.93822 5.02438 5.10125 5.13506 5.21929 5.30934 5.36167 5.40609 5.51647 5.65033 5.67359 5.71495 5.84732 5.90989 5.93757 5.98034 6.03611 6.08155 6.16618 6.26584 6.32382 6.35237 6.43548 6.45078 6.63291 6.74121 6.83537 6.96236 7.29647 7.50773 7.61079 8.00880 8.55229 9.12236 9.49717 9.99461 10.71034 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.007140 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.003691 B = 3920.714520 C = 5464.157255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.064 4.064 6 C -0.032 4.032 7 C 0.454 3.546 8 O -0.591 6.591 9 N -0.551 5.551 10 C -0.302 4.302 11 H 0.104 0.896 12 C 0.025 3.975 13 N -0.896 5.896 14 Si 0.928 3.072 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.143 4.143 19 C 0.061 3.939 20 O -0.390 6.390 21 C 0.053 3.947 22 C -0.117 4.117 23 C -0.101 4.101 24 C -0.120 4.120 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.393 0.607 31 H 0.272 0.728 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 1.500 10.334 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.131 4.131 5 C -0.064 4.064 6 C -0.036 4.036 7 C 0.239 3.761 8 O -0.477 6.477 9 N -0.185 5.185 10 C -0.431 4.431 11 H 0.122 0.878 12 C -0.177 4.177 13 N -0.537 5.537 14 Si 0.755 3.245 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.181 4.181 19 C -0.016 4.016 20 O -0.309 6.309 21 C -0.023 4.023 22 C -0.155 4.155 23 C -0.119 4.119 24 C -0.138 4.138 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.227 0.773 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.140 0.860 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.643 1.000 10.306 11.792 hybrid contribution -0.312 0.138 -1.252 1.298 sum -5.955 1.138 9.054 10.896 Atomic orbital electron populations 1.20747 0.91644 1.02214 1.02114 1.19845 0.95727 0.93348 1.00754 1.20930 0.94064 0.97255 1.01475 1.21134 0.94071 0.97806 1.00076 1.19625 0.93889 0.93415 0.99521 1.19714 0.91496 0.96447 0.95922 1.19432 0.85494 0.86888 0.84280 1.90474 1.46820 1.23882 1.86505 1.41859 1.45123 1.25854 1.05635 1.19773 1.28506 1.10841 0.83986 0.87847 1.25267 0.97022 0.95877 0.99545 1.69622 1.38199 1.17984 1.27849 0.85830 0.78702 0.78970 0.81045 1.19190 1.20723 1.20670 1.22329 0.97278 0.95566 1.02913 1.22543 0.93379 0.95344 0.90320 1.87811 1.77379 1.21080 1.44642 1.22770 0.93717 0.82672 1.03164 1.21916 0.96944 1.00645 0.95985 1.21010 0.93985 0.97974 0.98940 1.20936 0.94014 0.97305 1.01513 0.91387 0.91914 0.91882 0.86377 0.85632 0.77343 0.91842 0.90147 0.90624 0.89135 0.92330 0.89740 0.90310 0.91603 0.90288 0.85993 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.10 -1.35 5.88 -104.62 -0.62 -1.97 16 3 C -0.12 -1.70 9.70 -39.58 -0.38 -2.09 16 4 C -0.11 -1.77 8.99 -39.58 -0.36 -2.13 16 5 C -0.06 -1.11 4.73 -104.63 -0.49 -1.61 16 6 C -0.03 -0.59 0.48 -156.63 -0.07 -0.67 16 7 C 0.45 10.48 4.74 -10.98 -0.05 10.43 16 8 O -0.59 -15.32 13.68 5.55 0.08 -15.24 16 9 N -0.55 -13.80 5.06 -10.96 -0.06 -13.86 16 10 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 11 H 0.10 2.98 7.17 -52.48 -0.38 2.60 16 12 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 13 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 14 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C -0.14 -2.35 3.46 -26.59 -0.09 -2.44 16 19 C 0.06 1.04 6.62 37.20 0.25 1.28 16 20 O -0.39 -6.90 10.77 -35.23 -0.38 -7.28 16 21 C 0.05 0.92 6.56 37.21 0.24 1.16 16 22 C -0.12 -1.98 4.26 -26.59 -0.11 -2.09 16 23 C -0.10 -1.73 8.94 -39.59 -0.35 -2.08 16 24 C -0.12 -1.79 9.70 -39.58 -0.38 -2.18 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.13 1.78 5.94 -52.48 -0.31 1.46 16 30 H 0.39 9.70 7.08 -40.82 -0.29 9.41 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.08 1.34 6.62 -51.93 -0.34 1.00 16 33 H 0.08 1.09 7.59 -51.93 -0.39 0.70 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.15 7.38 -51.93 -0.38 0.77 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.60 6.03 -51.93 -0.31 1.28 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.36 7.08 -51.93 -0.37 0.99 16 40 H 0.12 2.13 7.36 -52.49 -0.39 1.74 16 41 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -30.14 328.08 -7.70 -37.84 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.68 Total: 14.17 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -2.31 Total: -13.03 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.67 Total: -37.25 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.30 Total: -22.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.14 -7.70 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264713213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.575 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds