Wall clock time and date at job start Tue Mar 31 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.99806 * 2 1 4 4 C 1.38231 * 119.99908 * 179.97438 * 3 2 1 5 5 C 1.38241 * 120.00080 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99835 * 180.02562 * 5 4 3 7 7 C 1.50710 * 109.53858 * 245.03142 * 6 5 4 8 8 O 1.21289 * 119.99448 * 246.07177 * 7 6 5 9 9 N 1.34768 * 119.99767 * 66.07233 * 7 6 5 10 10 C 1.37105 * 119.99873 * 175.07161 * 9 7 6 11 11 H 1.08004 * 119.99400 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00185 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99998 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00034 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47001 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46584 * 119.99743 * 14 12 10 17 17 H 1.48498 * 109.46950 * 240.00151 * 14 12 10 18 18 C 1.53178 * 109.62005 * 5.25250 * 6 5 4 19 19 C 1.53087 * 109.16585 * 176.89639 * 18 6 5 20 20 O 1.42906 * 109.41541 * 302.39299 * 19 18 6 21 21 C 1.42901 * 114.09987 * 61.15221 * 20 19 18 22 22 C 1.53093 * 109.41594 * 298.85012 * 21 20 19 23 23 C 1.38229 * 119.99833 * 0.26816 * 5 4 3 24 24 C 1.38233 * 120.00121 * 359.52207 * 23 5 4 25 25 H 1.09002 * 109.47201 * 90.00220 * 1 2 3 26 26 H 1.09004 * 109.47034 * 209.99782 * 1 2 3 27 27 H 1.08997 * 109.47112 * 329.99416 * 1 2 3 28 28 H 1.07998 * 120.00001 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.00114 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00475 * 355.35104 * 9 7 6 31 31 H 0.97000 * 120.00124 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.51772 * 296.80089 * 18 6 5 33 33 H 1.09002 * 109.52085 * 56.98721 * 18 6 5 34 34 H 1.08992 * 109.48437 * 182.41108 * 19 18 6 35 35 H 1.09001 * 109.49310 * 62.37679 * 19 18 6 36 36 H 1.08996 * 109.48261 * 178.86249 * 21 20 19 37 37 H 1.09007 * 109.48687 * 58.83319 * 21 20 19 38 38 H 1.08995 * 109.52202 * 297.69378 * 22 21 20 39 39 H 1.09004 * 109.51791 * 177.50943 * 22 21 20 40 40 H 1.07999 * 120.00212 * 179.73313 * 23 5 4 41 41 H 1.08009 * 120.00329 * 180.27689 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0001 0.0028 7 6 6.2837 -0.6000 -1.2841 8 8 6.8881 -1.6514 -1.2667 9 7 6.0638 0.0318 -2.4541 10 6 6.6090 -0.4603 -3.6119 11 1 7.2151 -1.3539 -3.5861 12 6 6.3828 0.1913 -4.8181 13 7 5.6467 1.2794 -4.8491 14 14 7.1263 -0.4787 -6.3954 15 1 7.9077 -1.7046 -6.0925 16 1 6.0404 -0.8084 -7.3532 17 1 8.0211 0.5440 -6.9942 18 6 6.2928 1.4370 0.1346 19 6 7.8216 1.4186 0.2127 20 8 8.2311 0.6099 1.3175 21 6 7.8192 -0.7554 1.2256 22 6 6.2903 -0.8242 1.1880 23 6 3.5806 -1.1971 -0.0035 24 6 2.1982 -1.1971 0.0004 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6581 2.1325 -0.0004 29 1 4.1205 2.1325 0.0010 30 1 5.5232 0.8368 -2.4765 31 1 5.4890 1.7345 -5.6911 32 1 5.9794 2.0171 -0.7335 33 1 5.8872 1.8873 1.0406 34 1 8.1909 2.4349 0.3497 35 1 8.2280 1.0054 -0.7104 36 1 8.1867 -1.3051 2.0920 37 1 8.2253 -1.1973 0.3156 38 1 5.8846 -0.4197 2.1153 39 1 5.9751 -1.8614 1.0734 40 1 4.1205 -2.1324 -0.0070 41 1 1.6582 -2.1325 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264713213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:44 Heat of formation + Delta-G solvation = -89.645808 kcal Electronic energy + Delta-G solvation = -23983.875426 eV Core-core repulsion = 20634.143610 eV Total energy + Delta-G solvation = -3349.731816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.00048 -39.80454 -38.94853 -36.09386 -35.75504 -33.34868 -32.51741 -32.29727 -31.47349 -28.36446 -27.20619 -25.32259 -25.01536 -23.22841 -22.58749 -22.00859 -20.29295 -19.62483 -18.03346 -17.60480 -16.98284 -16.76913 -16.30645 -16.24107 -15.90377 -15.85585 -15.26680 -15.13401 -14.85917 -14.52530 -14.37372 -14.31733 -13.63262 -13.53141 -13.25234 -13.09803 -12.98770 -12.95233 -12.75083 -12.45229 -12.32550 -12.15320 -12.06115 -12.02787 -11.59063 -11.41718 -11.32825 -10.68610 -10.20384 -10.01129 -9.80130 -9.32074 -8.48950 -5.97465 0.40431 0.52089 1.32810 1.38444 1.52123 1.99572 2.26328 2.79470 2.91349 3.15262 3.17473 3.60742 3.70761 3.84276 4.02003 4.04479 4.09867 4.16920 4.27608 4.33614 4.50283 4.53910 4.60521 4.67220 4.69195 4.75443 4.84186 4.87596 4.90053 4.96328 5.04161 5.06787 5.16738 5.20726 5.30686 5.39088 5.53981 5.70729 5.71748 5.97229 6.14607 6.19935 6.55425 7.08973 7.52697 8.06512 8.68144 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.007140 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.003691 B = 3920.714520 C = 5464.157255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.085 4.085 6 C -0.025 4.025 7 C 0.457 3.543 8 O -0.625 6.625 9 N -0.560 5.560 10 C -0.334 4.334 11 H 0.078 0.922 12 C -0.009 4.009 13 N -0.915 5.915 14 Si 0.989 3.011 15 H -0.274 1.274 16 H -0.272 1.272 17 H -0.268 1.268 18 C -0.137 4.137 19 C 0.059 3.941 20 O -0.390 6.390 21 C 0.054 3.946 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.128 4.128 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.394 0.606 31 H 0.278 0.722 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.021 0.979 36 H 0.113 0.887 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 2.944 11.155 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.086 4.086 6 C -0.029 4.029 7 C 0.245 3.755 8 O -0.513 6.513 9 N -0.195 5.195 10 C -0.464 4.464 11 H 0.096 0.904 12 C -0.209 4.209 13 N -0.556 5.556 14 Si 0.813 3.187 15 H -0.199 1.199 16 H -0.197 1.197 17 H -0.194 1.194 18 C -0.174 4.174 19 C -0.017 4.017 20 O -0.308 6.308 21 C -0.023 4.023 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.145 4.145 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.227 0.773 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.039 0.961 36 H 0.131 0.869 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.367 2.457 11.140 13.580 hybrid contribution 0.177 -0.347 -1.454 1.505 sum -7.191 2.110 9.685 12.246 Atomic orbital electron populations 1.20815 0.88941 1.03926 1.02860 1.20298 0.97734 0.92724 0.98789 1.21331 0.93662 0.98692 1.00302 1.21361 0.95009 0.97574 0.99732 1.19580 0.92976 0.94356 1.01685 1.19631 0.92660 0.97432 0.93149 1.20354 0.83727 0.86020 0.85449 1.90446 1.47957 1.25527 1.87391 1.41858 1.45720 1.26144 1.05771 1.19698 1.29879 1.10998 0.85778 0.90425 1.25994 0.97086 0.95968 1.01867 1.69677 1.38542 1.18466 1.28871 0.84932 0.78175 0.78262 0.77358 1.19889 1.19715 1.19350 1.22327 0.96639 0.94245 1.04230 1.22629 0.93952 0.96479 0.88689 1.87812 1.77580 1.20984 1.44473 1.22758 0.94077 0.82787 1.02645 1.21914 0.96521 1.00136 0.96509 1.21049 0.95196 0.97384 1.00505 1.21205 0.93249 0.98912 1.01181 0.90936 0.90565 0.89955 0.83480 0.84210 0.77258 0.91265 0.90464 0.87491 0.85990 0.96094 0.86858 0.94095 0.89014 0.91310 0.87780 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.01 71.24 0.71 -1.21 16 2 C -0.10 -2.42 5.88 -19.87 -0.12 -2.54 16 3 C -0.12 -3.14 9.70 22.27 0.22 -2.93 16 4 C -0.12 -3.51 8.99 22.27 0.20 -3.31 16 5 C -0.09 -2.94 4.73 -19.87 -0.09 -3.03 16 6 C -0.03 -0.94 0.48 -53.55 -0.03 -0.96 16 7 C 0.46 22.06 4.74 87.66 0.42 22.48 16 8 O -0.63 -34.42 13.68 -3.06 -0.04 -34.47 16 9 N -0.56 -29.23 5.06 -306.98 -1.55 -30.78 16 10 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 11 H 0.08 4.75 7.17 -2.91 -0.02 4.73 16 12 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 13 N -0.92 -49.45 13.05 21.66 0.28 -49.16 16 14 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 C -0.14 -4.35 3.46 30.68 0.11 -4.24 16 19 C 0.06 1.99 6.62 72.01 0.48 2.47 16 20 O -0.39 -13.45 10.77 -148.98 -1.60 -15.05 16 21 C 0.05 1.87 6.56 72.01 0.47 2.34 16 22 C -0.11 -3.81 4.26 30.68 0.13 -3.68 16 23 C -0.12 -4.25 8.94 22.27 0.20 -4.05 16 24 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 27 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 28 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.14 3.61 5.94 -2.91 -0.02 3.59 16 30 H 0.39 20.01 7.08 -92.71 -0.66 19.36 16 31 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.08 2.52 6.62 -2.38 -0.02 2.50 16 33 H 0.11 2.77 7.59 -2.39 -0.02 2.75 16 34 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.02 0.85 7.38 -2.39 -0.02 0.84 16 36 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.04 1.75 6.03 -2.38 -0.01 1.73 16 38 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.07 2.44 7.08 -2.38 -0.02 2.43 16 40 H 0.10 3.84 7.36 -2.91 -0.02 3.82 16 41 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -67.26 328.08 3.69 -63.57 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: 0.39 Total: 41.07 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.19 Total: -20.44 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -1.27 Total: -79.94 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.65 Total: -49.52 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.26 3.69 -63.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264713213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.076 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds