Wall clock time and date at job start Tue Mar 31 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 112.84885 * 2 1 4 4 O 1.21287 * 119.99744 * 129.66643 * 3 2 1 5 5 N 1.34773 * 120.00409 * 309.66450 * 3 2 1 6 6 C 1.46494 * 120.00431 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47203 * 180.02562 * 6 5 3 8 8 C 1.38303 * 119.92725 * 269.72512 * 7 6 5 9 9 C 1.38098 * 120.06895 * 179.72736 * 8 7 6 10 10 C 1.38883 * 119.92986 * 0.56733 * 9 8 7 11 11 O 1.35752 * 120.07113 * 179.68687 * 10 9 8 12 12 C 1.34827 * 117.00080 * 174.48872 * 11 10 9 13 13 H 1.07995 * 120.00238 * 5.04748 * 12 11 10 14 14 C 1.38651 * 119.99768 * 185.05841 * 12 11 10 15 15 N 1.31558 * 120.00215 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99853 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47174 * 59.99790 * 16 14 12 18 18 H 1.48500 * 109.47433 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47338 * 299.99820 * 16 14 12 20 20 C 1.38874 * 119.86171 * 359.70317 * 10 9 8 21 21 C 1.38103 * 119.93323 * 0.02562 * 20 10 9 22 22 C 1.53788 * 113.61837 * 228.80252 * 2 1 3 23 23 C 1.53953 * 87.01898 * 220.05004 * 22 2 1 24 24 C 1.53777 * 87.11202 * 25.36252 * 23 22 2 25 25 H 1.08997 * 109.46643 * 50.33629 * 1 2 3 26 26 H 1.09004 * 109.46860 * 170.33043 * 1 2 3 27 27 H 1.08996 * 109.47246 * 290.32922 * 1 2 3 28 28 H 0.97004 * 119.99453 * 359.97438 * 5 3 2 29 29 H 1.09006 * 109.47165 * 300.00078 * 6 5 3 30 30 H 1.08995 * 109.47575 * 59.99778 * 6 5 3 31 31 H 1.07998 * 119.96518 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.03574 * 180.27278 * 9 8 7 33 33 H 0.96998 * 120.00037 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.03909 * 179.97438 * 20 10 9 35 35 H 1.07993 * 119.96870 * 179.97438 * 21 20 10 36 36 H 1.08994 * 113.61007 * 334.56804 * 22 2 1 37 37 H 1.08994 * 113.61307 * 105.46972 * 22 2 1 38 38 H 1.09000 * 113.53738 * 270.80653 * 23 22 2 39 39 H 1.09003 * 113.73979 * 139.94383 * 23 22 2 40 40 H 1.09007 * 113.61336 * 220.08935 * 24 23 22 41 41 H 1.08995 * 113.61732 * 89.19439 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9685 1.6872 0.8086 5 7 1.6904 2.2991 -0.8984 6 6 2.2596 3.6489 -0.8988 7 6 1.6184 4.4642 -1.9921 8 6 2.1777 4.4835 -3.2568 9 6 1.5894 5.2251 -4.2623 10 6 0.4415 5.9615 -3.9993 11 8 -0.1356 6.6966 -4.9839 12 6 -1.3083 7.2950 -4.6937 13 1 -1.7060 7.2460 -3.6908 14 6 -2.0039 7.9733 -5.6829 15 7 -1.5194 8.0333 -6.9045 16 14 -3.6292 8.8019 -5.2809 17 1 -3.4155 9.8254 -4.2264 18 1 -4.1674 9.4543 -6.5015 19 1 -4.5964 7.7852 -4.7951 20 6 -0.1145 5.9445 -2.7268 21 6 0.4754 5.1964 -1.7270 22 6 2.1461 -0.9281 -1.0602 23 6 3.1924 -1.3136 0.0013 24 6 2.1460 -0.9281 1.0602 25 1 -0.3632 0.6559 -0.7911 26 1 -0.3633 -1.0131 -0.1726 27 1 -0.3633 0.3570 0.9636 28 1 1.0081 2.0602 -1.5454 29 1 2.0720 4.1226 0.0648 30 1 3.3341 3.5901 -1.0716 31 1 3.0732 3.9148 -3.4594 32 1 2.0241 5.2363 -5.2509 33 1 -2.0059 8.5081 -7.5964 34 1 -1.0067 6.5163 -2.5190 35 1 0.0437 5.1831 -0.7371 36 1 1.4947 -1.7522 -1.3506 37 1 2.5651 -0.3970 -1.9149 38 1 4.0711 -0.6687 0.0007 39 1 3.4454 -2.3738 0.0033 40 1 2.5650 -0.3970 1.9150 41 1 1.4946 -1.7522 1.3507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267380595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:26 Heat of formation + Delta-G solvation = -30.051588 kcal Electronic energy + Delta-G solvation = -22091.919071 eV Core-core repulsion = 18744.771455 eV Total energy + Delta-G solvation = -3347.147617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73985 -39.18784 -37.70096 -36.72513 -34.45527 -32.40006 -30.75952 -30.29218 -29.47619 -26.14549 -25.80156 -25.02224 -23.63265 -22.07775 -21.49681 -20.64988 -19.18092 -18.09158 -17.12590 -16.63604 -16.04487 -15.55893 -15.14659 -14.76814 -14.57406 -14.27419 -14.07683 -13.73119 -13.71375 -13.46295 -13.22330 -12.83250 -12.79326 -12.71749 -12.39748 -12.08026 -11.70415 -11.54907 -11.40533 -11.11874 -10.97428 -10.82167 -10.72950 -10.52007 -10.51089 -10.43629 -9.72349 -9.45221 -8.96266 -8.92228 -8.30947 -7.34789 -6.54635 -4.13752 2.04730 2.10718 2.62594 3.07452 3.07887 3.11636 3.34999 3.88940 4.23388 4.36594 4.44231 4.60236 4.62538 4.87359 4.99958 5.14483 5.21411 5.22900 5.39715 5.42162 5.46250 5.47185 5.56052 5.64093 5.70456 5.78271 5.81979 5.89179 5.91074 6.03352 6.09952 6.20264 6.32558 6.51367 6.58071 6.78158 6.93399 7.11806 7.25037 7.32985 7.60565 7.69795 7.89870 8.26836 8.90531 9.58495 10.62796 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.002882 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.422804 B = 9711.946900 C = 9962.792837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C 0.534 3.466 4 O -0.545 6.545 5 N -0.718 5.718 6 C 0.179 3.821 7 C -0.215 4.215 8 C -0.054 4.054 9 C -0.195 4.195 10 C 0.161 3.839 11 O -0.173 6.173 12 C -0.394 4.394 13 H 0.093 0.907 14 C 0.041 3.959 15 N -0.860 5.860 16 Si 0.942 3.058 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.237 4.237 21 C -0.051 4.051 22 C -0.123 4.123 23 C -0.141 4.141 24 C -0.117 4.117 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.402 0.598 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.272 0.728 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -15.119 10.911 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 C 0.319 3.681 4 O -0.423 6.423 5 N -0.369 5.369 6 C 0.056 3.944 7 C -0.216 4.216 8 C -0.073 4.073 9 C -0.214 4.214 10 C 0.106 3.894 11 O -0.075 6.075 12 C -0.470 4.470 13 H 0.110 0.890 14 C -0.164 4.164 15 N -0.494 5.494 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.256 4.256 21 C -0.070 4.070 22 C -0.160 4.160 23 C -0.179 4.179 24 C -0.155 4.155 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.237 0.763 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.992 -14.701 11.008 18.795 hybrid contribution -1.245 0.447 -0.166 1.333 sum 2.747 -14.254 10.842 18.119 Atomic orbital electron populations 1.21728 0.92275 1.02663 1.02585 1.21982 0.96627 0.92555 1.00470 1.19950 0.81832 0.85756 0.80533 1.90667 1.32306 1.80238 1.39078 1.46314 1.42848 1.12448 1.35282 1.19985 0.96828 0.80335 0.97203 1.19208 1.00611 1.06747 0.95063 1.20527 0.97946 0.97000 0.91849 1.20216 0.98175 1.03088 0.99964 1.19435 0.92123 0.89440 0.88423 1.83978 1.34562 1.54519 1.34471 1.21309 0.95941 1.32316 0.97473 0.88969 1.25316 0.99466 0.97129 0.94502 1.70025 1.38534 1.39417 1.01394 0.85766 0.80067 0.79299 0.78243 1.19416 1.20191 1.19411 1.21156 1.04296 1.06708 0.93458 1.20640 0.93916 0.94652 0.97745 1.22994 0.98227 0.98407 0.96413 1.22866 0.97529 1.01386 0.96087 1.22826 0.97608 0.97870 0.97208 0.91955 0.91480 0.91964 0.76328 0.91619 0.91604 0.86993 0.86368 0.91800 0.85416 0.87417 0.89092 0.91062 0.89852 0.91295 0.90120 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.09 37.16 0.34 -0.78 16 2 C -0.11 -1.12 1.25 -154.85 -0.19 -1.31 16 3 C 0.53 7.01 6.64 -10.99 -0.07 6.94 16 4 O -0.55 -9.03 15.83 5.55 0.09 -8.94 16 5 N -0.72 -9.03 5.44 -61.48 -0.33 -9.36 16 6 C 0.18 2.51 5.80 -5.20 -0.03 2.48 16 7 C -0.21 -3.42 5.25 -104.57 -0.55 -3.97 16 8 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 9 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 O -0.17 -4.77 9.76 0.05 0.00 -4.76 16 12 C -0.39 -10.67 9.49 30.88 0.29 -10.37 16 13 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 14 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 15 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16 16 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 C -0.24 -4.87 9.17 -39.40 -0.36 -5.23 16 21 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 22 C -0.12 -1.05 7.23 -25.82 -0.19 -1.24 16 23 C -0.14 -1.28 7.76 -25.83 -0.20 -1.48 16 24 C -0.12 -1.10 7.02 -25.92 -0.18 -1.28 16 25 H 0.06 0.51 7.11 -51.93 -0.37 0.14 16 26 H 0.07 0.45 7.98 -51.93 -0.41 0.03 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.40 4.57 7.45 -40.82 -0.30 4.27 16 29 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.09 0.62 7.99 -51.93 -0.41 0.21 16 37 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.90 7.41 -51.93 -0.38 0.51 16 41 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 343.82 15.07 5.18 5.18 Total: -1.00 -30.52 343.82 -7.80 -38.32 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.81 Total: 7.16 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.66 Total: -18.65 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.42 Total: -33.18 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.52 -7.80 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267380595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.270 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds