Wall clock time and date at job start Tue Mar 31 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 112.84885 * 2 1 4 4 O 1.21287 * 119.99744 * 129.66643 * 3 2 1 5 5 N 1.34773 * 120.00409 * 309.66450 * 3 2 1 6 6 C 1.46494 * 120.00431 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47203 * 180.02562 * 6 5 3 8 8 C 1.38303 * 119.92725 * 269.72512 * 7 6 5 9 9 C 1.38098 * 120.06895 * 179.72736 * 8 7 6 10 10 C 1.38883 * 119.92986 * 0.56733 * 9 8 7 11 11 O 1.35752 * 120.07113 * 179.68687 * 10 9 8 12 12 C 1.34827 * 117.00080 * 174.48872 * 11 10 9 13 13 H 1.07995 * 120.00238 * 5.04748 * 12 11 10 14 14 C 1.38651 * 119.99768 * 185.05841 * 12 11 10 15 15 N 1.31558 * 120.00215 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99853 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47174 * 59.99790 * 16 14 12 18 18 H 1.48500 * 109.47433 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47338 * 299.99820 * 16 14 12 20 20 C 1.38874 * 119.86171 * 359.70317 * 10 9 8 21 21 C 1.38103 * 119.93323 * 0.02562 * 20 10 9 22 22 C 1.53788 * 113.61837 * 228.80252 * 2 1 3 23 23 C 1.53953 * 87.01898 * 220.05004 * 22 2 1 24 24 C 1.53777 * 87.11202 * 25.36252 * 23 22 2 25 25 H 1.08997 * 109.46643 * 50.33629 * 1 2 3 26 26 H 1.09004 * 109.46860 * 170.33043 * 1 2 3 27 27 H 1.08996 * 109.47246 * 290.32922 * 1 2 3 28 28 H 0.97004 * 119.99453 * 359.97438 * 5 3 2 29 29 H 1.09006 * 109.47165 * 300.00078 * 6 5 3 30 30 H 1.08995 * 109.47575 * 59.99778 * 6 5 3 31 31 H 1.07998 * 119.96518 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.03574 * 180.27278 * 9 8 7 33 33 H 0.96998 * 120.00037 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.03909 * 179.97438 * 20 10 9 35 35 H 1.07993 * 119.96870 * 179.97438 * 21 20 10 36 36 H 1.08994 * 113.61007 * 334.56804 * 22 2 1 37 37 H 1.08994 * 113.61307 * 105.46972 * 22 2 1 38 38 H 1.09000 * 113.53738 * 270.80653 * 23 22 2 39 39 H 1.09003 * 113.73979 * 139.94383 * 23 22 2 40 40 H 1.09007 * 113.61336 * 220.08935 * 24 23 22 41 41 H 1.08995 * 113.61732 * 89.19439 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9685 1.6872 0.8086 5 7 1.6904 2.2991 -0.8984 6 6 2.2596 3.6489 -0.8988 7 6 1.6184 4.4642 -1.9921 8 6 2.1777 4.4835 -3.2568 9 6 1.5894 5.2251 -4.2623 10 6 0.4415 5.9615 -3.9993 11 8 -0.1356 6.6966 -4.9839 12 6 -1.3083 7.2950 -4.6937 13 1 -1.7060 7.2460 -3.6908 14 6 -2.0039 7.9733 -5.6829 15 7 -1.5194 8.0333 -6.9045 16 14 -3.6292 8.8019 -5.2809 17 1 -3.4155 9.8254 -4.2264 18 1 -4.1674 9.4543 -6.5015 19 1 -4.5964 7.7852 -4.7951 20 6 -0.1145 5.9445 -2.7268 21 6 0.4754 5.1964 -1.7270 22 6 2.1461 -0.9281 -1.0602 23 6 3.1924 -1.3136 0.0013 24 6 2.1460 -0.9281 1.0602 25 1 -0.3632 0.6559 -0.7911 26 1 -0.3633 -1.0131 -0.1726 27 1 -0.3633 0.3570 0.9636 28 1 1.0081 2.0602 -1.5454 29 1 2.0720 4.1226 0.0648 30 1 3.3341 3.5901 -1.0716 31 1 3.0732 3.9148 -3.4594 32 1 2.0241 5.2363 -5.2509 33 1 -2.0059 8.5081 -7.5964 34 1 -1.0067 6.5163 -2.5190 35 1 0.0437 5.1831 -0.7371 36 1 1.4947 -1.7522 -1.3506 37 1 2.5651 -0.3970 -1.9149 38 1 4.0711 -0.6687 0.0007 39 1 3.4454 -2.3738 0.0033 40 1 2.5650 -0.3970 1.9150 41 1 1.4946 -1.7522 1.3507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267380595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:26 Heat of formation + Delta-G solvation = -48.639262 kcal Electronic energy + Delta-G solvation = -22092.725093 eV Core-core repulsion = 18744.771455 eV Total energy + Delta-G solvation = -3347.953639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67433 -40.81396 -38.88874 -38.12627 -35.70620 -34.28895 -31.93339 -31.77954 -30.54053 -27.74124 -26.68551 -26.38640 -24.55116 -23.66244 -22.48685 -22.04909 -20.20036 -19.85097 -18.85948 -17.56201 -17.15778 -16.67851 -16.39581 -16.27671 -16.00467 -15.55828 -15.51105 -15.16334 -14.94014 -14.48192 -14.39006 -14.18490 -14.09622 -13.65884 -13.45502 -13.32146 -13.06443 -13.01328 -12.54558 -12.40219 -12.28623 -12.19861 -12.14618 -11.84475 -11.22225 -11.21564 -11.16676 -10.86823 -10.69739 -10.08440 -9.82822 -9.02330 -8.48728 -6.17214 0.52818 0.55980 1.35825 1.45459 1.51663 1.60882 2.16890 2.26027 2.84394 3.16109 3.47188 3.49636 3.64130 3.74841 3.87553 3.93639 4.00650 4.12200 4.15742 4.42632 4.54926 4.55309 4.69229 4.78105 4.78721 4.81392 4.86375 4.89646 5.02212 5.05213 5.13112 5.15730 5.21136 5.24751 5.33395 5.42718 5.50083 5.52317 5.67703 5.73155 6.00555 6.13997 6.57543 6.95950 7.23901 7.74807 8.73875 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.002882 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.422804 B = 9711.946900 C = 9962.792837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C 0.531 3.469 4 O -0.583 6.583 5 N -0.712 5.712 6 C 0.183 3.817 7 C -0.183 4.183 8 C -0.044 4.044 9 C -0.204 4.204 10 C 0.123 3.877 11 O -0.228 6.228 12 C -0.415 4.415 13 H 0.104 0.896 14 C -0.021 4.021 15 N -0.919 5.919 16 Si 1.017 2.983 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.256 1.256 20 C -0.243 4.243 21 C -0.046 4.046 22 C -0.114 4.114 23 C -0.144 4.144 24 C -0.116 4.116 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.410 0.590 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.273 0.727 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 -17.357 12.960 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 C 0.319 3.681 4 O -0.463 6.463 5 N -0.363 5.363 6 C 0.061 3.939 7 C -0.184 4.184 8 C -0.062 4.062 9 C -0.223 4.223 10 C 0.072 3.928 11 O -0.134 6.134 12 C -0.491 4.491 13 H 0.121 0.879 14 C -0.219 4.219 15 N -0.557 5.557 16 Si 0.836 3.164 17 H -0.182 1.182 18 H -0.197 1.197 19 H -0.180 1.180 20 C -0.262 4.262 21 C -0.064 4.064 22 C -0.151 4.151 23 C -0.181 4.181 24 C -0.154 4.154 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.246 0.754 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.539 -16.981 13.094 21.733 hybrid contribution -0.831 0.905 -0.559 1.350 sum 2.708 -16.075 12.535 20.564 Atomic orbital electron populations 1.21750 0.90722 1.04124 1.02419 1.22003 0.97676 0.90605 1.01573 1.20537 0.81120 0.86882 0.79583 1.90657 1.34034 1.81082 1.40510 1.46162 1.42891 1.11774 1.35495 1.19883 0.96942 0.80845 0.96265 1.19479 0.99079 1.04687 0.95136 1.20865 0.98472 0.95791 0.91114 1.20445 0.97593 1.03256 1.01015 1.19981 0.93361 0.90479 0.88940 1.83949 1.35659 1.57214 1.36602 1.21799 0.96399 1.32654 0.98255 0.87892 1.26578 1.03418 0.97711 0.94148 1.70171 1.40802 1.41906 1.02800 0.84666 0.75006 0.78410 0.78287 1.18237 1.19738 1.18002 1.21243 1.04356 1.07264 0.93362 1.20929 0.93888 0.93416 0.98191 1.23035 0.98037 0.98539 0.95532 1.22846 0.96824 1.02086 0.96348 1.22884 0.98029 0.98244 0.96238 0.91921 0.89252 0.92370 0.75351 0.91312 0.91109 0.83611 0.86626 0.91762 0.86098 0.84389 0.86529 0.91678 0.92223 0.89383 0.92489 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.09 71.98 0.65 -1.09 16 2 C -0.12 -1.96 1.25 -52.40 -0.07 -2.03 16 3 C 0.53 12.81 6.64 87.66 0.58 13.39 16 4 O -0.58 -18.55 15.83 -3.05 -0.05 -18.60 16 5 N -0.71 -15.80 5.44 -466.80 -2.54 -18.34 16 6 C 0.18 4.55 5.80 85.63 0.50 5.05 16 7 C -0.18 -5.27 5.25 -19.83 -0.10 -5.38 16 8 C -0.04 -1.36 9.69 22.25 0.22 -1.15 16 9 C -0.20 -8.15 9.99 22.39 0.22 -7.92 16 10 C 0.12 5.84 6.65 22.58 0.15 5.99 16 11 O -0.23 -13.29 9.76 -22.73 -0.22 -13.52 16 12 C -0.42 -23.44 9.49 67.92 0.64 -22.80 16 13 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16 14 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 15 N -0.92 -55.30 13.67 21.61 0.30 -55.01 16 16 Si 1.02 41.62 29.55 68.60 2.03 43.65 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 C -0.24 -9.94 9.17 22.39 0.21 -9.74 16 21 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16 22 C -0.11 -1.58 7.23 31.18 0.23 -1.35 16 23 C -0.14 -2.26 7.76 31.18 0.24 -2.02 16 24 C -0.12 -1.90 7.02 31.12 0.22 -1.68 16 25 H 0.06 0.82 7.11 -2.39 -0.02 0.80 16 26 H 0.09 0.80 7.98 -2.38 -0.02 0.78 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.41 7.96 7.45 -92.71 -0.69 7.27 16 29 H 0.07 1.74 8.08 -2.38 -0.02 1.72 16 30 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 31 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 35 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 36 H 0.12 1.06 7.99 -2.39 -0.02 1.04 16 37 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.21 7.41 -2.38 -0.02 1.20 16 41 H 0.11 1.24 8.10 -2.39 -0.02 1.22 16 Total: -1.00 -70.92 343.82 4.23 -66.68 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.35 Total: 27.77 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.37 Total: -32.64 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -2.24 Total: -73.34 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.27 Total: -32.11 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -70.92 4.23 -66.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267380595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.044 kcal (2) G-P(sol) polarization free energy of solvation -70.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds