Wall clock time and date at job start Tue Mar 31 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53778 * 113.61574 * 2 1 4 4 C 1.53961 * 87.02030 * 220.04669 * 3 2 1 5 5 N 1.46492 * 113.66727 * 139.93047 * 4 3 2 6 6 C 1.34783 * 119.99644 * 107.44675 * 5 4 3 7 7 O 1.21274 * 120.00353 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99771 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.47067 * 179.97438 * 8 6 5 10 10 C 1.38302 * 119.93290 * 269.72440 * 9 8 6 11 11 C 1.38103 * 120.06971 * 179.72244 * 10 9 8 12 12 C 1.38881 * 119.92746 * 0.57342 * 11 10 9 13 13 O 1.35745 * 120.06805 * 179.68126 * 12 11 10 14 14 C 1.34836 * 117.00402 * 174.49046 * 13 12 11 15 15 H 1.08002 * 119.99605 * 5.05199 * 14 13 12 16 16 C 1.38647 * 120.00496 * 185.05666 * 14 13 12 17 17 N 1.31551 * 120.00233 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99674 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47439 * 90.00263 * 18 16 14 20 20 H 1.48507 * 109.47156 * 209.99877 * 18 16 14 21 21 H 1.48500 * 109.47402 * 329.99932 * 18 16 14 22 22 C 1.38882 * 119.86132 * 359.70056 * 12 11 10 23 23 C 1.38094 * 119.93460 * 0.02562 * 22 12 11 24 24 C 1.53785 * 113.61483 * 262.38877 * 2 1 3 25 25 H 1.08999 * 109.47860 * 159.13704 * 1 2 3 26 26 H 1.09000 * 109.47203 * 39.13531 * 1 2 3 27 27 H 1.09000 * 109.47242 * 279.14115 * 1 2 3 28 28 H 1.09004 * 112.84694 * 131.19686 * 2 1 3 29 29 H 1.08998 * 113.61853 * 334.56495 * 3 2 1 30 30 H 1.09000 * 113.61574 * 105.47234 * 3 2 1 31 31 H 1.09003 * 113.53554 * 270.81407 * 4 3 2 32 32 H 0.96999 * 120.00844 * 287.44266 * 5 4 3 33 33 H 1.08996 * 109.47113 * 299.99750 * 8 6 5 34 34 H 1.09000 * 109.47276 * 59.99463 * 8 6 5 35 35 H 1.08004 * 119.96409 * 359.97438 * 10 9 8 36 36 H 1.07997 * 120.03811 * 180.27565 * 11 10 9 37 37 H 0.96998 * 120.00283 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.03228 * 179.97438 * 22 12 11 39 39 H 1.07998 * 119.96975 * 179.97438 * 23 22 12 40 40 H 1.08996 * 113.61208 * 254.52985 * 24 2 1 41 41 H 1.08999 * 113.61054 * 25.43612 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9893 5 7 3.5311 1.8018 -2.0626 6 6 4.7264 2.4245 -2.0611 7 8 5.5213 2.2090 -1.1709 8 6 5.0746 3.3896 -3.1650 9 6 6.4559 3.9445 -2.9299 10 6 6.6181 5.1010 -2.1891 11 6 7.8830 5.6089 -1.9671 12 6 8.9919 4.9634 -2.4987 13 8 10.2361 5.4637 -2.2877 14 6 11.2751 4.7288 -2.7331 15 1 11.0952 3.8293 -3.3032 16 6 12.5744 5.1276 -2.4590 17 7 13.5881 4.4102 -2.8932 18 14 12.8855 6.6836 -1.4734 19 1 12.9472 6.3498 -0.0277 20 1 14.1738 7.2887 -1.8971 21 1 11.7829 7.6494 -1.7118 22 6 8.8252 3.8054 -3.2470 23 6 7.5582 3.2994 -3.4606 24 6 2.1460 -0.1866 -1.3967 25 1 -0.3635 -0.9602 -0.3660 26 1 -0.3633 0.7971 -0.6486 27 1 -0.3634 0.1633 1.0146 28 1 1.9532 -0.6616 0.7559 29 1 1.4946 2.1704 -0.4289 30 1 2.5650 1.7024 0.9625 31 1 4.0711 0.4398 -0.5035 32 1 2.8952 1.9745 -2.7745 33 1 5.0495 2.8702 -4.1229 34 1 4.3524 4.2059 -3.1753 35 1 5.7549 5.6053 -1.7803 36 1 8.0095 6.5096 -1.3848 37 1 14.4970 4.6891 -2.7011 38 1 9.6856 3.3015 -3.6620 39 1 7.4279 2.3991 -4.0428 40 1 2.5650 -1.1795 -1.5599 41 1 1.4945 0.1377 -2.2081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267692061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:43 Heat of formation + Delta-G solvation = -28.694259 kcal Electronic energy + Delta-G solvation = -21765.458440 eV Core-core repulsion = 18418.369681 eV Total energy + Delta-G solvation = -3347.088759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27078 -39.20514 -38.38566 -36.56007 -33.73269 -32.45988 -31.51284 -30.18551 -29.48607 -26.85341 -26.01378 -24.93631 -22.84661 -22.03684 -20.87327 -20.31248 -19.58864 -17.83823 -17.24628 -16.91514 -16.42238 -15.70737 -15.30618 -14.71413 -14.53760 -14.03385 -13.91891 -13.74466 -13.66604 -13.46266 -13.22547 -12.82305 -12.68094 -12.54102 -12.48445 -12.16072 -11.96842 -11.56256 -11.30172 -11.25222 -10.92111 -10.73859 -10.71418 -10.62819 -10.58954 -10.11372 -9.65653 -9.33370 -9.06165 -8.81400 -8.17988 -7.25076 -6.37062 -4.03337 2.21243 2.21507 2.76944 3.22505 3.26247 3.30174 3.43980 4.19754 4.22957 4.27943 4.48994 4.52936 4.58876 4.90364 4.96697 5.06762 5.15111 5.15846 5.27663 5.30935 5.35289 5.37586 5.44289 5.53962 5.63869 5.71116 5.71737 5.74454 5.80916 5.88395 6.09299 6.18710 6.38678 6.46562 6.62230 6.85153 7.07883 7.27810 7.36197 7.49749 7.67515 7.85646 8.09045 8.35187 8.98451 9.61491 10.70728 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.002630 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.027788 B =10643.722401 C =10652.080075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.149 4.149 4 C 0.123 3.877 5 N -0.730 5.730 6 C 0.509 3.491 7 O -0.521 6.521 8 C -0.083 4.083 9 C -0.161 4.161 10 C -0.062 4.062 11 C -0.191 4.191 12 C 0.162 3.838 13 O -0.218 6.218 14 C -0.388 4.388 15 H 0.106 0.894 16 C 0.062 3.938 17 N -0.881 5.881 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.219 4.219 23 C -0.058 4.058 24 C -0.143 4.143 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.398 0.602 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.279 0.721 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.693 -6.251 0.959 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.383 5.383 6 C 0.296 3.704 7 O -0.395 6.395 8 C -0.122 4.122 9 C -0.162 4.162 10 C -0.080 4.080 11 C -0.210 4.210 12 C 0.110 3.890 13 O -0.124 6.124 14 C -0.464 4.464 15 H 0.124 0.876 16 C -0.141 4.141 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.238 4.238 23 C -0.077 4.077 24 C -0.182 4.182 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.232 0.768 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.737 -6.211 1.701 25.561 hybrid contribution -0.002 0.476 0.016 0.477 sum -24.738 -5.734 1.718 25.452 Atomic orbital electron populations 1.21690 0.94515 1.01688 1.01804 1.22325 0.95773 0.97754 0.97489 1.23579 0.98169 0.96678 1.00401 1.22461 0.96892 0.90069 0.88818 1.46073 1.18301 1.45820 1.28067 1.21059 0.80844 0.81088 0.87419 1.90742 1.48647 1.62644 1.37419 1.20441 0.96670 0.97904 0.97228 1.18710 0.92653 0.98503 1.06327 1.20400 0.95690 0.95186 0.96764 1.20149 0.90697 1.03201 1.06982 1.19119 0.85501 0.91701 0.92719 1.83568 1.11530 1.45695 1.71564 1.20773 0.82977 1.08303 1.34314 0.87640 1.24463 0.93821 0.98816 0.96966 1.69645 0.99000 1.38520 1.44735 0.86178 0.77919 0.82626 0.80151 1.19897 1.20828 1.18378 1.21222 0.97747 0.99364 1.05491 1.20565 0.91871 0.97512 0.97734 1.23416 0.97710 0.99521 0.97507 0.92538 0.92632 0.92575 0.89004 0.89827 0.91095 0.86900 0.76846 0.88902 0.88942 0.87232 0.86566 0.91110 0.84973 0.87547 0.90881 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.70 37.15 0.36 -0.40 16 2 C -0.11 -0.75 4.35 -89.81 -0.39 -1.14 16 3 C -0.15 -1.21 7.45 -25.83 -0.19 -1.40 16 4 C 0.12 1.15 4.24 -67.02 -0.28 0.86 16 5 N -0.73 -6.97 5.36 -52.93 -0.28 -7.25 16 6 C 0.51 6.93 7.82 -10.98 -0.09 6.84 16 7 O -0.52 -9.81 15.64 5.56 0.09 -9.72 16 8 C -0.08 -1.00 5.83 -29.03 -0.17 -1.17 16 9 C -0.16 -2.76 4.38 -104.57 -0.46 -3.22 16 10 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 11 C -0.19 -3.99 9.99 -39.39 -0.39 -4.38 16 12 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 13 O -0.22 -5.97 8.59 0.05 0.00 -5.97 16 14 C -0.39 -11.26 9.95 30.88 0.31 -10.95 16 15 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 16 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 17 N -0.88 -25.97 13.96 55.48 0.77 -25.20 16 18 Si 0.91 22.22 28.62 -169.99 -4.86 17.35 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.26 -6.38 7.11 56.52 0.40 -5.97 16 22 C -0.22 -4.96 9.17 -39.40 -0.36 -5.32 16 23 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 24 C -0.14 -0.95 7.40 -25.91 -0.19 -1.15 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.29 7.98 -51.93 -0.41 -0.13 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.62 7.99 -51.93 -0.41 0.21 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.11 1.33 7.47 -51.93 -0.39 0.95 16 32 H 0.40 2.50 8.73 -40.82 -0.36 2.14 16 33 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 37 H 0.28 7.58 8.31 -40.82 -0.34 7.25 16 38 H 0.13 3.12 5.64 -52.49 -0.30 2.83 16 39 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.46 8.08 -51.93 -0.42 0.05 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -33.46 345.94 -7.99 -41.45 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.93 Total: 3.21 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.98 Total: -19.08 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.49 Total: -32.45 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.09 Total: -15.69 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.46 -7.99 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267692061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.754 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds