Wall clock time and date at job start Tue Mar 31 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53778 * 113.61574 * 2 1 4 4 C 1.53961 * 87.02030 * 220.04669 * 3 2 1 5 5 N 1.46492 * 113.66727 * 139.93047 * 4 3 2 6 6 C 1.34783 * 119.99644 * 107.44675 * 5 4 3 7 7 O 1.21274 * 120.00353 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99771 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.47067 * 179.97438 * 8 6 5 10 10 C 1.38302 * 119.93290 * 269.72440 * 9 8 6 11 11 C 1.38103 * 120.06971 * 179.72244 * 10 9 8 12 12 C 1.38881 * 119.92746 * 0.57342 * 11 10 9 13 13 O 1.35745 * 120.06805 * 179.68126 * 12 11 10 14 14 C 1.34836 * 117.00402 * 174.49046 * 13 12 11 15 15 H 1.08002 * 119.99605 * 5.05199 * 14 13 12 16 16 C 1.38647 * 120.00496 * 185.05666 * 14 13 12 17 17 N 1.31551 * 120.00233 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99674 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47439 * 90.00263 * 18 16 14 20 20 H 1.48507 * 109.47156 * 209.99877 * 18 16 14 21 21 H 1.48500 * 109.47402 * 329.99932 * 18 16 14 22 22 C 1.38882 * 119.86132 * 359.70056 * 12 11 10 23 23 C 1.38094 * 119.93460 * 0.02562 * 22 12 11 24 24 C 1.53785 * 113.61483 * 262.38877 * 2 1 3 25 25 H 1.08999 * 109.47860 * 159.13704 * 1 2 3 26 26 H 1.09000 * 109.47203 * 39.13531 * 1 2 3 27 27 H 1.09000 * 109.47242 * 279.14115 * 1 2 3 28 28 H 1.09004 * 112.84694 * 131.19686 * 2 1 3 29 29 H 1.08998 * 113.61853 * 334.56495 * 3 2 1 30 30 H 1.09000 * 113.61574 * 105.47234 * 3 2 1 31 31 H 1.09003 * 113.53554 * 270.81407 * 4 3 2 32 32 H 0.96999 * 120.00844 * 287.44266 * 5 4 3 33 33 H 1.08996 * 109.47113 * 299.99750 * 8 6 5 34 34 H 1.09000 * 109.47276 * 59.99463 * 8 6 5 35 35 H 1.08004 * 119.96409 * 359.97438 * 10 9 8 36 36 H 1.07997 * 120.03811 * 180.27565 * 11 10 9 37 37 H 0.96998 * 120.00283 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.03228 * 179.97438 * 22 12 11 39 39 H 1.07998 * 119.96975 * 179.97438 * 23 22 12 40 40 H 1.08996 * 113.61208 * 254.52985 * 24 2 1 41 41 H 1.08999 * 113.61054 * 25.43612 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9893 5 7 3.5311 1.8018 -2.0626 6 6 4.7264 2.4245 -2.0611 7 8 5.5213 2.2090 -1.1709 8 6 5.0746 3.3896 -3.1650 9 6 6.4559 3.9445 -2.9299 10 6 6.6181 5.1010 -2.1891 11 6 7.8830 5.6089 -1.9671 12 6 8.9919 4.9634 -2.4987 13 8 10.2361 5.4637 -2.2877 14 6 11.2751 4.7288 -2.7331 15 1 11.0952 3.8293 -3.3032 16 6 12.5744 5.1276 -2.4590 17 7 13.5881 4.4102 -2.8932 18 14 12.8855 6.6836 -1.4734 19 1 12.9472 6.3498 -0.0277 20 1 14.1738 7.2887 -1.8971 21 1 11.7829 7.6494 -1.7118 22 6 8.8252 3.8054 -3.2470 23 6 7.5582 3.2994 -3.4606 24 6 2.1460 -0.1866 -1.3967 25 1 -0.3635 -0.9602 -0.3660 26 1 -0.3633 0.7971 -0.6486 27 1 -0.3634 0.1633 1.0146 28 1 1.9532 -0.6616 0.7559 29 1 1.4946 2.1704 -0.4289 30 1 2.5650 1.7024 0.9625 31 1 4.0711 0.4398 -0.5035 32 1 2.8952 1.9745 -2.7745 33 1 5.0495 2.8702 -4.1229 34 1 4.3524 4.2059 -3.1753 35 1 5.7549 5.6053 -1.7803 36 1 8.0095 6.5096 -1.3848 37 1 14.4970 4.6891 -2.7011 38 1 9.6856 3.3015 -3.6620 39 1 7.4279 2.3991 -4.0428 40 1 2.5650 -1.1795 -1.5599 41 1 1.4945 0.1377 -2.2081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267692061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:42 Heat of formation + Delta-G solvation = -50.456556 kcal Electronic energy + Delta-G solvation = -21766.402124 eV Core-core repulsion = 18418.369681 eV Total energy + Delta-G solvation = -3348.032443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27063 -40.72310 -39.45517 -38.19333 -34.66946 -34.51744 -32.91297 -31.80908 -30.15425 -28.34157 -26.79148 -26.59926 -23.78912 -23.64164 -22.16863 -21.37337 -20.33254 -19.81445 -19.10971 -17.90193 -17.31806 -16.77633 -16.41802 -16.28443 -15.87767 -15.69925 -15.55759 -15.21550 -14.75140 -14.49675 -14.33993 -14.16247 -14.06619 -13.87834 -13.36269 -13.14772 -13.03388 -12.87401 -12.54883 -12.51586 -12.40594 -12.31312 -11.93756 -11.81151 -11.37663 -11.28515 -11.18963 -10.94586 -10.73264 -9.92294 -9.79030 -8.97952 -8.51051 -6.23618 0.58294 0.61989 1.29381 1.34408 1.50724 1.74548 2.27304 2.32501 2.79190 3.05714 3.18595 3.60609 3.65450 3.85036 3.93517 3.94002 4.04322 4.14524 4.21951 4.48458 4.56407 4.58479 4.63720 4.70445 4.81395 4.82016 4.85473 4.93273 4.94355 4.98588 5.16993 5.17356 5.25513 5.37119 5.40218 5.48700 5.56435 5.71041 5.73912 5.79474 5.90950 6.24907 6.69612 6.83113 7.41561 7.57919 8.60806 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036496 B = 0.002630 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.027788 B =10643.722401 C =10652.080075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.108 3.892 5 N -0.708 5.708 6 C 0.509 3.491 7 O -0.585 6.585 8 C -0.080 4.080 9 C -0.137 4.137 10 C -0.060 4.060 11 C -0.194 4.194 12 C 0.117 3.883 13 O -0.246 6.246 14 C -0.400 4.400 15 H 0.079 0.921 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.264 1.264 21 H -0.262 1.262 22 C -0.239 4.239 23 C -0.066 4.066 24 C -0.129 4.129 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.418 0.582 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.128 0.872 37 H 0.285 0.715 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.073 0.927 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.153 -5.702 0.690 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.185 4.185 4 C 0.003 3.997 5 N -0.360 5.360 6 C 0.297 3.703 7 O -0.464 6.464 8 C -0.119 4.119 9 C -0.138 4.138 10 C -0.078 4.078 11 C -0.213 4.213 12 C 0.068 3.932 13 O -0.154 6.154 14 C -0.476 4.476 15 H 0.096 0.904 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.795 3.205 19 H -0.193 1.193 20 H -0.188 1.188 21 H -0.186 1.186 22 C -0.258 4.258 23 C -0.084 4.084 24 C -0.167 4.167 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.256 0.744 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.146 0.854 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.150 0.850 40 H 0.092 0.908 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -29.298 -5.684 1.394 29.876 hybrid contribution 0.994 0.147 0.060 1.007 sum -28.303 -5.537 1.454 28.876 Atomic orbital electron populations 1.21674 0.93197 1.02427 1.02111 1.22300 0.96756 0.96505 0.97418 1.23578 0.97829 0.97938 0.99175 1.22530 0.96539 0.91241 0.89415 1.45877 1.17367 1.44448 1.28340 1.21242 0.81218 0.81081 0.86793 1.90747 1.50754 1.64956 1.39921 1.20573 0.93996 0.99223 0.98119 1.19336 0.94811 0.97023 1.02654 1.20951 0.95713 0.95309 0.95806 1.20512 0.90900 1.03420 1.06460 1.19681 0.85389 0.93350 0.94773 1.83506 1.12146 1.46220 1.73519 1.20710 0.84296 1.08058 1.34579 0.90377 1.25311 0.93376 1.02182 0.98164 1.69729 0.99551 1.40512 1.46683 0.85192 0.78196 0.78490 0.78646 1.19294 1.18850 1.18645 1.21253 0.98787 0.99544 1.06222 1.20917 0.90981 0.98416 0.98078 1.23379 0.96577 0.98559 0.98139 0.91794 0.91839 0.92599 0.89521 0.88436 0.92830 0.90150 0.74388 0.85516 0.84696 0.82919 0.85398 0.90550 0.87616 0.84966 0.90835 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.70 71.98 0.70 -0.36 16 2 C -0.11 -1.20 4.35 -10.27 -0.04 -1.24 16 3 C -0.15 -2.05 7.45 31.18 0.23 -1.82 16 4 C 0.11 1.81 4.24 45.58 0.19 2.00 16 5 N -0.71 -10.91 5.36 -439.75 -2.36 -13.27 16 6 C 0.51 12.18 7.82 87.66 0.69 12.87 16 7 O -0.58 -21.38 15.64 -3.01 -0.05 -21.43 16 8 C -0.08 -1.53 5.83 29.10 0.17 -1.36 16 9 C -0.14 -4.29 4.38 -19.83 -0.09 -4.37 16 10 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 11 C -0.19 -7.98 9.99 22.39 0.22 -7.76 16 12 C 0.12 5.87 6.65 22.58 0.15 6.02 16 13 O -0.25 -14.15 8.59 -22.74 -0.20 -14.34 16 14 C -0.40 -24.76 9.95 67.92 0.68 -24.08 16 15 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16 16 C 0.01 0.47 5.49 84.83 0.47 0.93 16 17 N -0.92 -57.03 13.96 21.61 0.30 -56.73 16 18 Si 0.97 47.24 28.62 68.60 1.96 49.20 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 22 C -0.24 -11.33 9.17 22.39 0.21 -11.12 16 23 C -0.07 -2.46 9.69 22.25 0.22 -2.24 16 24 C -0.13 -1.32 7.40 31.12 0.23 -1.09 16 25 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.06 0.41 7.98 -2.39 -0.02 0.39 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.10 7.99 -2.39 -0.02 1.08 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.91 7.47 -2.39 -0.02 1.90 16 32 H 0.42 3.06 8.73 -92.71 -0.81 2.25 16 33 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 34 H 0.14 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 38 H 0.11 5.48 5.64 -2.91 -0.02 5.47 16 39 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 0.66 8.08 -2.39 -0.02 0.64 16 Total: -1.00 -79.56 345.94 4.12 -75.44 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.23 Total: 16.50 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.23 Total: -35.37 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -2.05 Total: -69.99 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.24 Total: -35.77 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.96 Total: 49.20 kcal Total: -79.56 4.12 -75.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267692061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.980 kcal (2) G-P(sol) polarization free energy of solvation -79.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds