Wall clock time and date at job start Tue Mar 31 2020 07:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.44770 * 2 1 4 4 C 1.53032 * 109.45875 * 240.03345 * 2 1 3 5 5 C 1.53189 * 109.31211 * 178.61640 * 4 2 1 6 6 N 1.46928 * 108.77693 * 54.63275 * 5 4 2 7 7 C 1.34778 * 120.62918 * 126.36964 * 6 5 4 8 8 O 1.21591 * 120.00214 * 354.63897 * 7 6 5 9 9 C 1.47637 * 119.99903 * 174.63822 * 7 6 5 10 10 C 1.40016 * 119.89570 * 326.46520 * 9 7 6 11 11 C 1.36319 * 120.10572 * 179.97438 * 10 9 7 12 12 C 1.40889 * 119.89447 * 0.02562 * 11 10 9 13 13 C 1.41109 * 120.10354 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99874 * 23.00777 * 13 12 11 15 15 C 1.40225 * 119.99688 * 203.01029 * 13 12 11 16 16 N 1.30640 * 120.00394 * 17.23144 * 15 13 12 17 17 Si 1.86800 * 119.99988 * 197.23087 * 15 13 12 18 18 H 1.48503 * 109.47093 * 59.99993 * 17 15 13 19 19 H 1.48495 * 109.47634 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47132 * 300.00110 * 17 15 13 21 21 C 1.40890 * 119.79267 * 359.97438 * 12 11 10 22 22 C 1.36316 * 119.89069 * 0.02562 * 21 12 11 23 23 C 1.46918 * 118.73750 * 306.64661 * 6 5 4 24 24 C 1.52756 * 109.01215 * 53.30651 * 23 6 5 25 25 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46647 * 299.96649 * 1 2 3 27 27 H 1.08998 * 109.47033 * 59.96534 * 1 2 3 28 28 H 0.96703 * 114.00152 * 60.03321 * 3 2 1 29 29 H 1.09002 * 109.50028 * 58.66430 * 4 2 1 30 30 H 1.09003 * 109.52621 * 298.58142 * 4 2 1 31 31 H 1.09001 * 109.58966 * 294.84442 * 5 4 2 32 32 H 1.09003 * 109.58864 * 174.42467 * 5 4 2 33 33 H 1.07991 * 119.94803 * 0.27357 * 10 9 7 34 34 H 1.08004 * 120.05138 * 180.02562 * 11 10 9 35 35 H 0.97000 * 120.00523 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.05428 * 179.97438 * 21 12 11 37 37 H 1.07998 * 119.94914 * 180.02562 * 22 21 12 38 38 H 1.09004 * 109.58559 * 173.14279 * 23 6 5 39 39 H 1.09003 * 109.58769 * 293.56615 * 23 6 5 40 40 H 1.09002 * 109.56730 * 185.55225 * 24 23 6 41 41 H 1.09000 * 109.35622 * 65.49919 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0058 1.3474 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0001 7 6 4.9614 -2.2578 0.0001 8 8 5.2906 -2.7784 -1.0483 9 6 5.5404 -2.7310 1.2731 10 6 5.7685 -1.8247 2.3156 11 6 6.3025 -2.2571 3.4930 12 6 6.6255 -3.6183 3.6596 13 6 7.1779 -4.0708 4.8767 14 1 7.0205 -3.5065 5.7839 15 6 7.9314 -5.2530 4.9080 16 7 8.4077 -5.7537 3.7993 17 14 8.2540 -6.1121 6.5351 18 1 6.9612 -6.4939 7.1581 19 1 9.0679 -7.3313 6.2983 20 1 8.9888 -5.1943 7.4423 21 6 6.3942 -4.5265 2.6077 22 6 5.8598 -4.0848 1.4340 23 6 3.5671 -0.6923 1.2643 24 6 2.0399 -0.7207 1.2501 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8904 27 1 -0.3633 0.5144 -0.8897 28 1 1.7207 1.8653 0.7653 29 1 1.6572 -0.2207 -2.1398 30 1 1.6978 -1.7556 -1.2388 31 1 3.9143 0.3409 -1.3673 32 1 3.9417 -1.2845 -2.0984 33 1 5.5165 -0.7823 2.1886 34 1 6.4777 -1.5573 4.2968 35 1 8.9285 -6.5717 3.8209 36 1 6.6406 -5.5708 2.7307 37 1 5.6817 -4.7802 0.6271 38 1 3.9346 -1.2908 2.0979 39 1 3.9097 0.3369 1.3716 40 1 1.6572 -0.2206 2.1399 41 1 1.6979 -1.7556 1.2384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270333265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:27 Heat of formation + Delta-G solvation = -86.435734 kcal Electronic energy + Delta-G solvation = -23138.509507 eV Core-core repulsion = 19788.916890 eV Total energy + Delta-G solvation = -3349.592617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47483 -39.71379 -38.77845 -36.43506 -35.70768 -33.39976 -32.46866 -31.82268 -31.13256 -29.37372 -27.60712 -24.81414 -24.51570 -23.02268 -22.75487 -21.47338 -20.20089 -19.38205 -18.20549 -17.22421 -17.16681 -17.10344 -16.20928 -15.97836 -15.69236 -15.46124 -15.24414 -15.05725 -14.60114 -14.41233 -14.15615 -13.94052 -13.66192 -13.49140 -13.22253 -12.94956 -12.85239 -12.82222 -12.68954 -12.45681 -12.40101 -12.15796 -12.13736 -11.75879 -11.35083 -11.32554 -11.11068 -10.85306 -10.55962 -9.65668 -9.50572 -9.32783 -8.76107 -6.46651 0.51140 1.13131 1.38824 1.45336 1.52964 2.00345 2.16366 2.19118 2.72663 3.33783 3.65581 3.70603 3.74604 3.94771 4.03384 4.14590 4.31289 4.37255 4.38614 4.49165 4.62130 4.72740 4.76914 4.82732 4.87526 4.96828 4.98857 5.00827 5.03598 5.10379 5.22225 5.27740 5.30293 5.35108 5.58930 5.68662 5.79094 6.00403 6.02193 6.20534 6.53476 6.58079 6.78613 6.90690 6.97678 7.34994 8.17614 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.003695 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.551075 B = 7575.678667 C = 8057.741371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 O -0.568 6.568 4 C -0.116 4.116 5 C 0.115 3.885 6 N -0.607 5.607 7 C 0.569 3.431 8 O -0.610 6.610 9 C -0.289 4.289 10 C -0.043 4.043 11 C -0.244 4.244 12 C 0.099 3.901 13 C -0.472 4.472 14 H 0.093 0.907 15 C 0.033 3.967 16 N -0.806 5.806 17 Si 0.990 3.010 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.254 1.254 21 C -0.202 4.202 22 C -0.054 4.054 23 C 0.095 3.905 24 C -0.156 4.156 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.391 0.609 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.294 0.706 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 10.198 -0.088 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.095 3.905 3 O -0.376 6.376 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.339 5.339 7 C 0.363 3.637 8 O -0.494 6.494 9 C -0.293 4.293 10 C -0.061 4.061 11 C -0.264 4.264 12 C 0.096 3.904 13 C -0.499 4.499 14 H 0.111 0.889 15 C -0.186 4.186 16 N -0.430 5.430 17 Si 0.809 3.191 18 H -0.180 1.180 19 H -0.194 1.194 20 H -0.177 1.177 21 C -0.221 4.221 22 C -0.073 4.073 23 C -0.027 4.027 24 C -0.195 4.195 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.241 0.759 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.915 9.579 -1.299 16.132 hybrid contribution 0.301 -0.674 0.702 1.019 sum -12.615 8.906 -0.597 15.453 Atomic orbital electron populations 1.22407 0.93808 1.03068 1.03449 1.21047 0.93425 0.82315 0.93760 1.86525 1.77643 1.22901 1.50579 1.21890 0.94189 1.00550 0.98755 1.21489 0.94833 0.98482 0.85930 1.47956 1.42622 1.35053 1.08294 1.18662 0.78044 0.78299 0.88661 1.90607 1.64328 1.59279 1.35179 1.19086 1.19200 0.95246 0.95798 1.20818 0.95252 0.98216 0.91826 1.20915 1.11579 0.95022 0.98860 1.18121 0.87687 0.91652 0.92935 1.20135 1.27060 1.06884 0.95829 0.88875 1.27038 0.92728 0.96669 1.02123 1.69803 1.23091 1.18676 1.31398 0.85124 0.79510 0.77756 0.76668 1.18033 1.19414 1.17749 1.20997 1.06337 0.99906 0.94862 1.20479 0.96311 0.94394 0.96158 1.22225 0.94845 0.99650 0.85962 1.22563 0.94977 1.02060 0.99871 0.91689 0.90466 0.91529 0.75924 0.88922 0.91077 0.90729 0.91585 0.84846 0.86493 0.89446 0.87416 0.89546 0.88623 0.89952 0.87601 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.81 71.98 0.63 -1.62 16 2 C 0.14 2.45 0.98 -10.77 -0.01 2.44 16 3 O -0.57 -9.88 11.71 -148.98 -1.74 -11.63 16 4 C -0.12 -2.62 5.11 30.67 0.16 -2.47 16 5 C 0.11 3.43 6.20 86.36 0.54 3.96 16 6 N -0.61 -20.90 2.98 -823.38 -2.45 -23.35 16 7 C 0.57 25.48 7.39 86.72 0.64 26.12 16 8 O -0.61 -31.44 16.19 -4.00 -0.06 -31.51 16 9 C -0.29 -13.59 5.37 -19.93 -0.11 -13.70 16 10 C -0.04 -1.80 7.29 22.25 0.16 -1.64 16 11 C -0.24 -11.15 9.73 22.47 0.22 -10.93 16 12 C 0.10 5.14 5.60 -21.28 -0.12 5.02 16 13 C -0.47 -23.63 9.06 23.46 0.21 -23.42 16 14 H 0.09 4.32 7.91 -2.91 -0.02 4.29 16 15 C 0.03 1.55 5.17 85.35 0.44 1.99 16 16 N -0.81 -40.72 10.81 21.87 0.24 -40.48 16 17 Si 0.99 35.26 29.59 68.60 2.03 37.29 16 18 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 19 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 20 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 21 C -0.20 -10.79 8.65 22.47 0.19 -10.60 16 22 C -0.05 -2.78 9.53 22.25 0.21 -2.57 16 23 C 0.09 2.56 4.47 86.22 0.39 2.95 16 24 C -0.16 -3.16 5.07 30.53 0.15 -3.00 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.39 3.62 9.04 -74.06 -0.67 2.95 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.12 7.81 -2.39 -0.02 2.10 16 32 H 0.07 2.25 7.00 -2.39 -0.02 2.23 16 33 H 0.13 4.64 5.79 -2.92 -0.02 4.63 16 34 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 35 H 0.29 13.40 8.29 -92.71 -0.77 12.64 16 36 H 0.11 5.99 6.00 -2.91 -0.02 5.97 16 37 H 0.09 4.46 7.96 -2.91 -0.02 4.44 16 38 H 0.10 2.96 4.33 -2.39 -0.01 2.95 16 39 H 0.08 1.96 7.69 -2.39 -0.02 1.94 16 40 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.10 327.91 2.10 -64.01 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.38 Total: 33.14 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 3.71 Total: -27.47 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -2.22 Total: -63.83 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.81 Total: -43.14 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Total: -66.10 2.10 -64.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270333265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.428 kcal (2) G-P(sol) polarization free energy of solvation -66.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds