Wall clock time and date at job start Tue Mar 31 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 115.54514 * 2 1 4 4 C 1.52999 * 117.49710 * 214.33649 * 2 1 3 5 5 C 1.52995 * 117.50086 * 145.67534 * 2 1 3 6 6 H 1.09000 * 117.49441 * 214.98241 * 5 2 1 7 7 N 1.46496 * 117.50082 * 359.97088 * 5 2 1 8 8 C 1.34775 * 120.00522 * 205.00584 * 7 5 2 9 9 O 1.21277 * 119.99710 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00226 * 180.02562 * 8 7 5 11 11 C 1.50702 * 109.47009 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96260 * 269.71957 * 11 10 8 13 13 C 1.38276 * 120.13470 * 179.76510 * 12 11 10 14 14 C 1.38127 * 120.07024 * 0.51553 * 13 12 11 15 15 C 1.38858 * 119.92819 * 359.74018 * 14 13 12 16 16 O 1.35753 * 120.06470 * 180.02562 * 15 14 13 17 17 C 1.34826 * 117.00312 * 354.44838 * 16 15 14 18 18 H 1.08004 * 119.99957 * 5.04469 * 17 16 15 19 19 C 1.38655 * 119.99900 * 185.05638 * 17 16 15 20 20 N 1.31559 * 120.00085 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99869 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47404 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47224 * 119.99622 * 21 19 17 24 24 H 1.48504 * 109.47137 * 239.99591 * 21 19 17 25 25 C 1.38080 * 119.96532 * 90.00015 * 11 10 8 26 26 H 1.08997 * 109.47788 * 34.41728 * 1 2 3 27 27 H 1.09007 * 109.46884 * 154.41888 * 1 2 3 28 28 H 1.09004 * 109.46933 * 274.41002 * 1 2 3 29 29 H 1.08995 * 109.46819 * 85.59088 * 3 2 1 30 30 H 1.09000 * 109.46815 * 205.58140 * 3 2 1 31 31 H 1.08992 * 109.47397 * 325.58528 * 3 2 1 32 32 H 1.08992 * 117.50250 * 359.97438 * 4 2 1 33 33 H 1.09000 * 117.49898 * 145.02298 * 4 2 1 34 34 H 0.97008 * 119.99483 * 25.00630 * 7 5 2 35 35 H 1.09002 * 109.47115 * 299.99766 * 10 8 7 36 36 H 1.09004 * 109.47317 * 59.99817 * 10 8 7 37 37 H 1.08000 * 119.93082 * 0.02562 * 12 11 10 38 38 H 1.08003 * 119.96806 * 180.23452 * 13 12 11 39 39 H 1.07999 * 120.03263 * 179.76635 * 14 13 12 40 40 H 0.96991 * 119.99561 * 180.02562 * 20 19 17 41 41 H 1.07997 * 120.03623 * 359.95011 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2365 -1.1207 0.7652 6 1 3.1715 -0.8747 1.2684 7 7 1.3962 -2.1114 1.4425 8 6 1.8763 -2.7901 2.5033 9 8 3.0042 -2.5809 2.8970 10 6 1.0122 -3.8096 3.1995 11 6 1.7793 -4.4210 4.3436 12 6 2.5408 -5.5570 4.1359 13 6 3.2500 -6.1181 5.1820 14 6 3.1913 -5.5518 6.4404 15 6 2.4235 -4.4145 6.6532 16 8 2.3643 -3.8553 7.8888 17 6 2.9797 -4.5161 8.8900 18 1 3.5580 -5.4030 8.6764 19 6 2.8700 -4.0573 10.1938 20 7 2.1659 -2.9769 10.4540 21 14 3.7221 -4.9733 11.5810 22 1 4.4440 -6.1477 11.0288 23 1 4.6893 -4.0677 12.2515 24 1 2.7100 -5.4331 12.5657 25 6 1.7165 -3.8501 5.5993 26 1 -0.3634 0.8477 -0.5808 27 1 -0.3633 -0.9270 -0.4438 28 1 -0.3633 0.0790 1.0247 29 1 2.2752 1.7423 1.0246 30 1 3.1828 1.3085 -0.4437 31 1 1.5816 2.0739 -0.5808 32 1 1.6112 -1.8581 -1.2687 33 1 3.1715 -0.8746 -1.2687 34 1 0.4942 -2.2790 1.1273 35 1 0.1142 -3.3243 3.5819 36 1 0.7304 -4.5904 2.4930 37 1 2.5850 -6.0040 3.1538 38 1 3.8468 -7.0029 5.0159 39 1 3.7424 -5.9927 7.2579 40 1 2.0896 -2.6558 11.3660 41 1 1.1188 -2.9654 5.7616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270425024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:37 Heat of formation + Delta-G solvation = -23.747208 kcal Electronic energy + Delta-G solvation = -21913.607042 eV Core-core repulsion = 18566.732804 eV Total energy + Delta-G solvation = -3346.874238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.07029 -38.96496 -38.06302 -36.36153 -33.41473 -32.31844 -31.85897 -29.35640 -29.03076 -27.84395 -26.96274 -25.19658 -22.65138 -21.58721 -21.05147 -20.20061 -19.41202 -17.60207 -17.02350 -16.89197 -16.22647 -15.34124 -14.91038 -14.62879 -14.37812 -14.27140 -14.07215 -13.98320 -13.48464 -13.36818 -13.09539 -12.83632 -12.61832 -12.51301 -12.35588 -12.02624 -11.87002 -11.53142 -11.50030 -11.23209 -11.11881 -10.79885 -10.72102 -10.56098 -10.38855 -10.05913 -9.70288 -9.27383 -8.78594 -8.75421 -8.00390 -7.15439 -6.38745 -3.97562 2.14449 2.45486 2.70205 3.09928 3.17509 3.17758 3.23214 3.58100 4.01647 4.38927 4.55872 4.57235 4.63136 4.76331 4.91981 5.11291 5.16436 5.26464 5.33847 5.34829 5.49611 5.53748 5.58271 5.61332 5.62765 5.70206 5.78296 5.83019 5.85647 5.99298 6.00085 6.23911 6.40075 6.44379 6.72127 6.98126 7.13668 7.32851 7.42836 7.46841 7.50631 7.89324 8.06711 8.33486 9.07244 9.78733 10.79747 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.002992 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.091490 B = 9356.069804 C = 9989.678090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.141 4.141 3 C -0.115 4.115 4 C -0.187 4.187 5 C 0.092 3.908 6 H 0.136 0.864 7 N -0.710 5.710 8 C 0.517 3.483 9 O -0.516 6.516 10 C -0.093 4.093 11 C -0.033 4.033 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.174 4.174 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.399 0.601 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.268 0.732 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 2.473 -20.753 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.142 4.142 3 C -0.172 4.172 4 C -0.226 4.226 5 C -0.014 4.014 6 H 0.154 0.846 7 N -0.361 5.361 8 C 0.304 3.696 9 O -0.389 6.389 10 C -0.133 4.133 11 C -0.034 4.034 12 C -0.215 4.215 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.102 3.898 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.193 4.193 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.233 0.767 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.556 2.947 -20.121 20.644 hybrid contribution 0.043 -0.566 0.428 0.711 sum -3.513 2.381 -19.693 20.145 Atomic orbital electron populations 1.21325 0.91942 1.01979 1.02246 1.22049 0.95336 0.92009 1.04822 1.21352 0.99968 0.93612 1.02298 1.23753 1.02760 1.00945 0.95134 1.21750 0.96996 0.91944 0.90725 0.84616 1.45436 1.17410 1.40915 1.32363 1.20794 0.88090 0.81458 0.79258 1.90753 1.19434 1.65017 1.63746 1.20588 0.98376 0.97418 0.96906 1.18648 0.97546 0.95114 0.92090 1.20349 1.03772 0.99185 0.98212 1.20678 0.97591 0.98386 0.92659 1.21180 1.05907 0.99939 0.97974 1.19271 0.92533 0.91113 0.86923 1.83976 1.66859 1.45138 1.12448 1.21367 1.29875 1.10510 0.84855 0.89084 1.25274 0.97187 0.96636 0.97490 1.70052 1.37867 1.21384 1.20704 0.85655 0.78736 0.78992 0.80076 1.19132 1.20194 1.20199 1.19946 1.05334 1.02723 0.91343 0.91835 0.92527 0.91812 0.91875 0.92247 0.92000 0.88636 0.88180 0.76663 0.88186 0.88351 0.87948 0.87484 0.85613 0.92180 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 8.85 37.16 0.33 -0.47 16 2 C -0.14 -1.16 2.70 -154.51 -0.42 -1.57 16 3 C -0.11 -0.87 9.85 37.16 0.37 -0.51 16 4 C -0.19 -1.53 9.75 -26.69 -0.26 -1.79 16 5 C 0.09 0.98 6.13 -67.90 -0.42 0.57 16 6 H 0.14 1.76 7.40 -51.93 -0.38 1.37 16 7 N -0.71 -7.68 5.34 -53.78 -0.29 -7.97 16 8 C 0.52 7.66 7.82 -10.99 -0.09 7.57 16 9 O -0.52 -10.27 15.60 5.56 0.09 -10.18 16 10 C -0.09 -1.25 5.83 -29.03 -0.17 -1.42 16 11 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 12 C -0.20 -3.62 9.70 -39.53 -0.38 -4.00 16 13 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 14 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 15 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.18 -5.35 9.76 0.05 0.00 -5.35 16 17 C -0.39 -11.24 9.49 30.89 0.29 -10.95 16 18 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 21 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 C -0.17 -3.89 9.65 -39.40 -0.38 -4.27 16 26 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 27 H 0.06 0.33 7.61 -51.93 -0.39 -0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 31 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 32 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 33 H 0.10 0.75 8.05 -51.93 -0.42 0.34 16 34 H 0.40 3.08 7.69 -40.82 -0.31 2.76 16 35 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 36 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 39 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 41 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -34.67 349.06 -7.72 -42.39 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.82 Total: 5.82 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.70 Total: -20.81 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.47 Total: -33.15 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.09 Total: -15.53 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.67 -7.72 -42.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270425024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.646 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds