Wall clock time and date at job start Tue Mar 31 2020 07:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 115.54514 * 2 1 4 4 C 1.52999 * 117.49710 * 214.33649 * 2 1 3 5 5 C 1.52995 * 117.50086 * 145.67534 * 2 1 3 6 6 H 1.09000 * 117.49441 * 214.98241 * 5 2 1 7 7 N 1.46496 * 117.50082 * 359.97088 * 5 2 1 8 8 C 1.34775 * 120.00522 * 205.00584 * 7 5 2 9 9 O 1.21277 * 119.99710 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00226 * 180.02562 * 8 7 5 11 11 C 1.50702 * 109.47009 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96260 * 269.71957 * 11 10 8 13 13 C 1.38276 * 120.13470 * 179.76510 * 12 11 10 14 14 C 1.38127 * 120.07024 * 0.51553 * 13 12 11 15 15 C 1.38858 * 119.92819 * 359.74018 * 14 13 12 16 16 O 1.35753 * 120.06470 * 180.02562 * 15 14 13 17 17 C 1.34826 * 117.00312 * 354.44838 * 16 15 14 18 18 H 1.08004 * 119.99957 * 5.04469 * 17 16 15 19 19 C 1.38655 * 119.99900 * 185.05638 * 17 16 15 20 20 N 1.31559 * 120.00085 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99869 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47404 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47224 * 119.99622 * 21 19 17 24 24 H 1.48504 * 109.47137 * 239.99591 * 21 19 17 25 25 C 1.38080 * 119.96532 * 90.00015 * 11 10 8 26 26 H 1.08997 * 109.47788 * 34.41728 * 1 2 3 27 27 H 1.09007 * 109.46884 * 154.41888 * 1 2 3 28 28 H 1.09004 * 109.46933 * 274.41002 * 1 2 3 29 29 H 1.08995 * 109.46819 * 85.59088 * 3 2 1 30 30 H 1.09000 * 109.46815 * 205.58140 * 3 2 1 31 31 H 1.08992 * 109.47397 * 325.58528 * 3 2 1 32 32 H 1.08992 * 117.50250 * 359.97438 * 4 2 1 33 33 H 1.09000 * 117.49898 * 145.02298 * 4 2 1 34 34 H 0.97008 * 119.99483 * 25.00630 * 7 5 2 35 35 H 1.09002 * 109.47115 * 299.99766 * 10 8 7 36 36 H 1.09004 * 109.47317 * 59.99817 * 10 8 7 37 37 H 1.08000 * 119.93082 * 0.02562 * 12 11 10 38 38 H 1.08003 * 119.96806 * 180.23452 * 13 12 11 39 39 H 1.07999 * 120.03263 * 179.76635 * 14 13 12 40 40 H 0.96991 * 119.99561 * 180.02562 * 20 19 17 41 41 H 1.07997 * 120.03623 * 359.95011 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2365 -1.1207 0.7652 6 1 3.1715 -0.8747 1.2684 7 7 1.3962 -2.1114 1.4425 8 6 1.8763 -2.7901 2.5033 9 8 3.0042 -2.5809 2.8970 10 6 1.0122 -3.8096 3.1995 11 6 1.7793 -4.4210 4.3436 12 6 2.5408 -5.5570 4.1359 13 6 3.2500 -6.1181 5.1820 14 6 3.1913 -5.5518 6.4404 15 6 2.4235 -4.4145 6.6532 16 8 2.3643 -3.8553 7.8888 17 6 2.9797 -4.5161 8.8900 18 1 3.5580 -5.4030 8.6764 19 6 2.8700 -4.0573 10.1938 20 7 2.1659 -2.9769 10.4540 21 14 3.7221 -4.9733 11.5810 22 1 4.4440 -6.1477 11.0288 23 1 4.6893 -4.0677 12.2515 24 1 2.7100 -5.4331 12.5657 25 6 1.7165 -3.8501 5.5993 26 1 -0.3634 0.8477 -0.5808 27 1 -0.3633 -0.9270 -0.4438 28 1 -0.3633 0.0790 1.0247 29 1 2.2752 1.7423 1.0246 30 1 3.1828 1.3085 -0.4437 31 1 1.5816 2.0739 -0.5808 32 1 1.6112 -1.8581 -1.2687 33 1 3.1715 -0.8746 -1.2687 34 1 0.4942 -2.2790 1.1273 35 1 0.1142 -3.3243 3.5819 36 1 0.7304 -4.5904 2.4930 37 1 2.5850 -6.0040 3.1538 38 1 3.8468 -7.0029 5.0159 39 1 3.7424 -5.9927 7.2579 40 1 2.0896 -2.6558 11.3660 41 1 1.1188 -2.9654 5.7616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270425024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:36 Heat of formation + Delta-G solvation = -46.704350 kcal Electronic energy + Delta-G solvation = -21914.602539 eV Core-core repulsion = 18566.732804 eV Total energy + Delta-G solvation = -3347.869735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23116 -40.55309 -39.14248 -38.07461 -34.48134 -34.31877 -33.32451 -30.90586 -29.95587 -28.56351 -28.21582 -27.23650 -23.74277 -23.20659 -22.42227 -21.46397 -20.16600 -19.46311 -18.77177 -18.06210 -17.17130 -16.80807 -16.59047 -16.10769 -15.83714 -15.53973 -15.34756 -15.13101 -14.82357 -14.65520 -14.32730 -14.02474 -13.86843 -13.61548 -13.49416 -13.13133 -12.98201 -12.84521 -12.64943 -12.48935 -12.37722 -12.22869 -12.09494 -12.08131 -12.00352 -11.20731 -11.04254 -10.81271 -10.68318 -9.64317 -9.62651 -8.97935 -8.47331 -6.15899 0.51498 0.75731 1.33778 1.42662 1.52717 1.60321 2.12793 2.17719 2.84245 2.85299 3.17599 3.43850 3.67414 3.78440 3.89437 3.94243 4.07252 4.11295 4.16321 4.31934 4.43951 4.57650 4.63653 4.68846 4.73774 4.76620 4.88045 4.93791 5.02391 5.03797 5.06413 5.09380 5.13217 5.28287 5.30843 5.41083 5.54896 5.65102 5.72760 5.75250 6.02888 6.23457 6.56253 6.97285 7.29905 7.79033 8.76581 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.002992 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.091490 B = 9356.069804 C = 9989.678090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.130 4.130 3 C -0.119 4.119 4 C -0.167 4.167 5 C 0.057 3.943 6 H 0.103 0.897 7 N -0.687 5.687 8 C 0.516 3.484 9 O -0.580 6.580 10 C -0.090 4.090 11 C -0.026 4.026 12 C -0.180 4.180 13 C -0.074 4.074 14 C -0.247 4.247 15 C 0.112 3.888 16 O -0.235 6.235 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.021 2.979 22 H -0.252 1.252 23 H -0.269 1.269 24 H -0.265 1.265 25 C -0.193 4.193 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.417 0.583 35 H 0.123 0.877 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 0.777 -24.065 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.131 4.131 3 C -0.176 4.176 4 C -0.205 4.205 5 C -0.049 4.049 6 H 0.121 0.879 7 N -0.339 5.339 8 C 0.304 3.696 9 O -0.458 6.458 10 C -0.129 4.129 11 C -0.027 4.027 12 C -0.199 4.199 13 C -0.092 4.092 14 C -0.266 4.266 15 C 0.062 3.938 16 O -0.142 6.142 17 C -0.490 4.490 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.840 3.160 22 H -0.175 1.175 23 H -0.194 1.194 24 H -0.190 1.190 25 C -0.213 4.213 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.255 0.745 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.284 1.244 -23.533 23.952 hybrid contribution 0.210 -0.033 1.072 1.093 sum -4.074 1.211 -22.461 22.859 Atomic orbital electron populations 1.21379 0.90497 1.03473 1.02245 1.22167 0.96362 0.91669 1.02918 1.21405 1.00557 0.93805 1.01835 1.23816 1.03234 1.00738 0.92744 1.21737 0.96814 0.94040 0.92324 0.87869 1.45181 1.18067 1.39679 1.30931 1.20975 0.87294 0.81624 0.79688 1.90745 1.22131 1.67196 1.65743 1.20703 0.97869 0.98480 0.95842 1.19197 0.96780 0.94660 0.92062 1.20983 1.01123 0.98085 0.99671 1.21140 0.97528 0.99198 0.91304 1.21302 1.06017 0.99716 0.99612 1.19872 0.94563 0.92892 0.86466 1.83935 1.69049 1.47168 1.14073 1.21868 1.30431 1.11101 0.85585 0.88257 1.26622 0.97871 0.97567 1.00108 1.70198 1.40507 1.23774 1.21596 0.84507 0.77701 0.77881 0.75934 1.17536 1.19373 1.19029 1.20228 1.05583 1.02958 0.92506 0.90665 0.90849 0.92505 0.93183 0.92004 0.90358 0.86870 0.87632 0.74457 0.85947 0.83607 0.83433 0.83663 0.86464 0.91849 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.85 71.98 0.64 -0.62 16 2 C -0.13 -1.86 2.70 -52.18 -0.14 -2.00 16 3 C -0.12 -1.65 9.85 71.98 0.71 -0.94 16 4 C -0.17 -2.26 9.75 30.62 0.30 -1.96 16 5 C 0.06 1.15 6.13 45.01 0.28 1.43 16 6 H 0.10 2.80 7.40 -2.39 -0.02 2.78 16 7 N -0.69 -13.28 5.34 -442.44 -2.36 -15.64 16 8 C 0.52 14.40 7.82 87.66 0.69 15.09 16 9 O -0.58 -23.21 15.60 -3.02 -0.05 -23.25 16 10 C -0.09 -2.12 5.83 29.10 0.17 -1.95 16 11 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 12 C -0.18 -6.04 9.70 22.30 0.22 -5.82 16 13 C -0.07 -2.75 10.04 22.25 0.22 -2.52 16 14 C -0.25 -11.64 9.17 22.39 0.21 -11.43 16 15 C 0.11 6.01 6.65 22.58 0.15 6.16 16 16 O -0.24 -15.01 9.76 -22.74 -0.22 -15.23 16 17 C -0.41 -25.29 9.49 67.92 0.64 -24.65 16 18 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 19 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 20 N -0.92 -58.50 13.67 21.61 0.30 -58.21 16 21 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 C -0.19 -8.93 9.65 22.39 0.22 -8.71 16 26 H 0.07 0.65 7.93 -2.39 -0.02 0.64 16 27 H 0.07 0.54 7.61 -2.38 -0.02 0.52 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.82 7.90 -2.39 -0.02 0.80 16 31 H 0.08 0.84 7.93 -2.39 -0.02 0.82 16 32 H 0.11 1.17 8.05 -2.39 -0.02 1.15 16 33 H 0.11 1.33 8.05 -2.39 -0.02 1.32 16 34 H 0.42 4.87 7.69 -92.70 -0.71 4.16 16 35 H 0.12 2.40 8.09 -2.39 -0.02 2.38 16 36 H 0.15 2.11 8.08 -2.38 -0.02 2.09 16 37 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 38 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 39 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 40 H 0.27 15.73 8.31 -92.72 -0.77 14.96 16 41 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -83.73 349.06 4.69 -79.05 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.33 Total: 26.73 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.67 Total: -39.95 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -2.07 Total: -73.85 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.27 Total: -38.48 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -83.73 4.69 -79.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270425024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.344 kcal (2) G-P(sol) polarization free energy of solvation -83.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds