Wall clock time and date at job start Tue Mar 31 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.53935 * 2 1 4 4 C 1.34775 * 120.00233 * 59.82718 * 3 2 1 5 5 O 1.21591 * 119.99564 * 359.97438 * 4 3 2 6 6 C 1.47632 * 120.00302 * 179.97438 * 4 3 2 7 7 C 1.40014 * 119.89755 * 0.28702 * 6 4 3 8 8 C 1.36315 * 120.11279 * 180.25793 * 7 6 4 9 9 C 1.40893 * 119.88481 * 359.45096 * 8 7 6 10 10 C 1.41114 * 120.09748 * 180.29801 * 9 8 7 11 11 H 1.08000 * 120.00330 * 335.06249 * 10 9 8 12 12 C 1.40223 * 119.99644 * 155.06801 * 10 9 8 13 13 N 1.30656 * 120.00207 * 342.19907 * 12 10 9 14 14 Si 1.86803 * 120.00199 * 162.20506 * 12 10 9 15 15 H 1.48503 * 109.47047 * 94.65856 * 14 12 10 16 16 H 1.48504 * 109.47089 * 214.65560 * 14 12 10 17 17 H 1.48498 * 109.46765 * 334.65988 * 14 12 10 18 18 C 1.40884 * 119.79739 * 0.28068 * 9 8 7 19 19 C 1.36315 * 119.88972 * 359.97438 * 18 9 8 20 20 C 1.53169 * 109.61969 * 120.22009 * 2 1 3 21 21 C 1.53096 * 109.16787 * 176.89330 * 20 2 1 22 22 O 1.42901 * 109.41264 * 302.39322 * 21 20 2 23 23 C 1.42906 * 114.09674 * 61.15925 * 22 21 20 24 24 C 1.53098 * 109.41123 * 298.83568 * 23 22 21 25 25 H 1.09000 * 109.47085 * 60.00361 * 1 2 3 26 26 H 1.09006 * 109.46522 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47116 * 299.99699 * 1 2 3 28 28 H 0.97000 * 119.99677 * 239.82124 * 3 2 1 29 29 H 1.08000 * 119.94526 * 359.97438 * 7 6 4 30 30 H 1.07993 * 120.05993 * 179.72488 * 8 7 6 31 31 H 0.96994 * 120.00294 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.05494 * 180.02562 * 18 9 8 33 33 H 1.07999 * 119.94612 * 180.02562 * 19 18 9 34 34 H 1.09005 * 109.52535 * 296.80418 * 20 2 1 35 35 H 1.09009 * 109.52081 * 56.98899 * 20 2 1 36 36 H 1.09000 * 109.48191 * 182.41320 * 21 20 2 37 37 H 1.09001 * 109.48686 * 62.37889 * 21 20 2 38 38 H 1.09002 * 109.47904 * 178.86107 * 23 22 21 39 39 H 1.08991 * 109.49382 * 58.82756 * 23 22 21 40 40 H 1.09000 * 109.52567 * 297.70517 * 24 23 22 41 41 H 1.09006 * 109.52004 * 177.51640 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0200 1.3807 0.0000 4 6 1.6925 2.2120 1.0090 5 8 0.9900 1.8161 1.9191 6 6 2.1868 3.6031 1.0093 7 6 2.9906 4.0584 -0.0428 8 6 3.4537 5.3405 -0.0443 9 6 3.1125 6.2114 1.0094 10 6 3.5843 7.5413 1.0092 11 1 4.4878 7.7938 0.4741 12 6 2.8799 8.5351 1.7038 13 7 1.6370 8.3326 2.0521 14 14 3.7185 10.1487 2.1313 15 1 3.4171 11.1561 1.0827 16 1 3.2185 10.6342 3.4426 17 1 5.1865 9.9383 2.2082 18 6 2.2988 5.7504 2.0631 19 6 1.8448 4.4651 2.0584 20 6 2.0443 -0.7262 1.2467 21 6 3.5732 -0.7882 1.1974 22 8 3.9834 -1.4475 -0.0022 23 6 3.5714 -0.7875 -1.2009 24 6 2.0424 -0.7256 -1.2479 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.5802 1.6965 -0.7262 29 1 3.2480 3.3914 -0.8522 30 1 4.0773 5.6895 -0.8540 31 1 1.1499 9.0199 2.5329 32 1 2.0344 6.4145 2.8727 33 1 1.2206 4.1109 2.8655 34 1 1.7302 -0.1848 2.1392 35 1 1.6394 -1.7379 1.2719 36 1 3.9426 -1.3415 2.0608 37 1 3.9788 0.2234 1.2131 38 1 3.9396 -1.3404 -2.0651 39 1 3.9769 0.2241 -1.2168 40 1 1.6375 -1.7373 -1.2731 41 1 1.7271 -0.1837 -2.1396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270536013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:09 Heat of formation + Delta-G solvation = -76.891166 kcal Electronic energy + Delta-G solvation = -23157.491197 eV Core-core repulsion = 19808.312464 eV Total energy + Delta-G solvation = -3349.178733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38950 -38.40678 -37.10838 -35.17557 -33.92082 -31.78057 -31.15552 -29.98209 -29.34530 -28.27461 -25.89994 -23.70252 -23.03272 -22.17082 -21.06999 -19.99627 -18.88976 -17.53607 -17.16860 -16.09337 -15.99744 -15.47431 -15.29774 -14.75654 -14.40637 -14.16982 -14.00248 -13.58465 -13.21411 -12.82455 -12.70165 -12.55390 -12.26016 -12.15369 -11.94419 -11.82769 -11.71184 -11.43263 -11.29762 -11.22799 -10.99995 -10.65391 -10.55038 -10.35484 -10.06752 -9.58927 -9.55773 -9.34680 -8.80782 -8.58682 -7.72488 -7.58812 -7.04082 -4.62226 2.21384 2.88705 2.94144 2.99471 3.01179 3.68841 3.72760 3.84519 3.88835 4.53630 4.59803 4.83994 4.86738 5.04096 5.16803 5.40667 5.50955 5.54694 5.62773 5.66317 5.79366 5.83529 5.87836 5.92669 6.00579 6.08787 6.16544 6.25961 6.31907 6.49077 6.78356 6.81850 6.99917 7.04558 7.09026 7.19019 7.41441 7.59200 7.76654 7.85609 8.03261 8.23799 8.41017 8.60942 8.73280 9.07000 9.87918 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032092 B = 0.003582 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.294260 B = 7815.544256 C = 8138.227348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.178 3.822 3 N -0.736 5.736 4 C 0.575 3.425 5 O -0.568 6.568 6 C -0.285 4.285 7 C -0.050 4.050 8 C -0.235 4.235 9 C 0.128 3.872 10 C -0.443 4.443 11 H 0.084 0.916 12 C 0.074 3.926 13 N -0.769 5.769 14 Si 0.912 3.088 15 H -0.267 1.267 16 H -0.272 1.272 17 H -0.257 1.257 18 C -0.183 4.183 19 C -0.035 4.035 20 C -0.165 4.165 21 C 0.062 3.938 22 O -0.386 6.386 23 C 0.060 3.940 24 C -0.158 4.158 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.394 0.606 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.287 0.713 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -10.984 -4.738 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.092 3.908 3 N -0.390 5.390 4 C 0.370 3.630 5 O -0.450 6.450 6 C -0.289 4.289 7 C -0.069 4.069 8 C -0.254 4.254 9 C 0.125 3.875 10 C -0.471 4.471 11 H 0.102 0.898 12 C -0.147 4.147 13 N -0.392 5.392 14 Si 0.736 3.264 15 H -0.192 1.192 16 H -0.197 1.197 17 H -0.181 1.181 18 C -0.202 4.202 19 C -0.055 4.055 20 C -0.203 4.203 21 C -0.014 4.014 22 O -0.304 6.304 23 C -0.017 4.017 24 C -0.196 4.196 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.229 0.771 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.935 -11.325 -3.988 12.043 hybrid contribution 0.274 1.220 -0.314 1.289 sum 1.209 -10.105 -4.302 11.049 Atomic orbital electron populations 1.22192 0.94297 1.01628 1.03745 1.20155 0.94273 0.81946 0.94433 1.46099 1.55210 1.11014 1.26647 1.18525 0.78539 0.85569 0.80345 1.90570 1.39765 1.77692 1.36941 1.18931 1.14274 0.93192 1.02552 1.20343 0.95851 0.95320 0.95358 1.20661 1.09472 0.94935 1.00374 1.17781 0.88248 0.92444 0.89010 1.19839 1.08614 0.92477 1.26158 0.89757 1.26104 0.94165 1.01335 0.93134 1.69750 1.08222 1.34969 1.26259 0.86222 0.80993 0.80354 0.78869 1.19245 1.19688 1.18083 1.21006 1.04493 0.94417 1.00263 1.20471 0.96128 0.93175 0.95704 1.22600 0.96303 1.00937 1.00476 1.22568 0.94209 0.97700 0.86930 1.87887 1.77212 1.51452 1.13883 1.22545 0.93434 0.97727 0.87972 1.22494 0.97202 1.01844 0.98017 0.92820 0.92551 0.89860 0.77096 0.89505 0.88544 0.90156 0.86227 0.88198 0.88309 0.91051 0.89166 0.92730 0.88925 0.93092 0.89799 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.42 37.16 0.31 -1.92 16 2 C 0.18 2.43 0.66 -131.64 -0.09 2.34 16 3 N -0.74 -11.58 4.18 -48.44 -0.20 -11.78 16 4 C 0.58 11.56 7.18 -12.43 -0.09 11.47 16 5 O -0.57 -12.58 12.54 5.29 0.07 -12.51 16 6 C -0.29 -6.33 5.89 -104.73 -0.62 -6.94 16 7 C -0.05 -1.04 9.47 -39.61 -0.38 -1.41 16 8 C -0.23 -5.36 9.73 -39.27 -0.38 -5.74 16 9 C 0.13 3.23 5.57 -106.80 -0.60 2.64 16 10 C -0.44 -10.93 9.04 -37.75 -0.34 -11.28 16 11 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 12 C 0.07 1.73 5.13 -17.31 -0.09 1.65 16 13 N -0.77 -18.68 10.97 55.56 0.61 -18.07 16 14 Si 0.91 17.24 29.60 -169.99 -5.03 12.21 16 15 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 16 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 17 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 18 C -0.18 -4.61 8.63 -39.27 -0.34 -4.95 16 19 C -0.04 -0.85 9.52 -39.61 -0.38 -1.23 16 20 C -0.16 -2.30 4.77 -26.59 -0.13 -2.43 16 21 C 0.06 0.84 6.68 37.21 0.25 1.09 16 22 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 23 C 0.06 0.66 6.67 37.21 0.25 0.90 16 24 C -0.16 -1.68 4.96 -26.59 -0.13 -1.81 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.41 6.16 -51.93 -0.32 1.09 16 28 H 0.39 5.58 5.52 -40.82 -0.23 5.35 16 29 H 0.09 1.48 6.37 -52.49 -0.33 1.15 16 30 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 31 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 32 H 0.12 3.10 6.17 -52.48 -0.32 2.78 16 33 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 34 H 0.10 1.64 6.14 -51.93 -0.32 1.33 16 35 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.81 7.75 -51.93 -0.40 0.41 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.56 7.09 -51.93 -0.37 0.19 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -27.49 325.79 -8.39 -35.89 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.62 Total: 12.48 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.74 Total: -17.61 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 0.41 Total: -29.86 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.31 Total: -18.02 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.49 -8.39 -35.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270536013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.006 kcal (2) G-P(sol) polarization free energy of solvation -27.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds