Wall clock time and date at job start Tue Mar 31 2020 07:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.53935 * 2 1 4 4 C 1.34775 * 120.00233 * 59.82718 * 3 2 1 5 5 O 1.21591 * 119.99564 * 359.97438 * 4 3 2 6 6 C 1.47632 * 120.00302 * 179.97438 * 4 3 2 7 7 C 1.40014 * 119.89755 * 0.28702 * 6 4 3 8 8 C 1.36315 * 120.11279 * 180.25793 * 7 6 4 9 9 C 1.40893 * 119.88481 * 359.45096 * 8 7 6 10 10 C 1.41114 * 120.09748 * 180.29801 * 9 8 7 11 11 H 1.08000 * 120.00330 * 335.06249 * 10 9 8 12 12 C 1.40223 * 119.99644 * 155.06801 * 10 9 8 13 13 N 1.30656 * 120.00207 * 342.19907 * 12 10 9 14 14 Si 1.86803 * 120.00199 * 162.20506 * 12 10 9 15 15 H 1.48503 * 109.47047 * 94.65856 * 14 12 10 16 16 H 1.48504 * 109.47089 * 214.65560 * 14 12 10 17 17 H 1.48498 * 109.46765 * 334.65988 * 14 12 10 18 18 C 1.40884 * 119.79739 * 0.28068 * 9 8 7 19 19 C 1.36315 * 119.88972 * 359.97438 * 18 9 8 20 20 C 1.53169 * 109.61969 * 120.22009 * 2 1 3 21 21 C 1.53096 * 109.16787 * 176.89330 * 20 2 1 22 22 O 1.42901 * 109.41264 * 302.39322 * 21 20 2 23 23 C 1.42906 * 114.09674 * 61.15925 * 22 21 20 24 24 C 1.53098 * 109.41123 * 298.83568 * 23 22 21 25 25 H 1.09000 * 109.47085 * 60.00361 * 1 2 3 26 26 H 1.09006 * 109.46522 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47116 * 299.99699 * 1 2 3 28 28 H 0.97000 * 119.99677 * 239.82124 * 3 2 1 29 29 H 1.08000 * 119.94526 * 359.97438 * 7 6 4 30 30 H 1.07993 * 120.05993 * 179.72488 * 8 7 6 31 31 H 0.96994 * 120.00294 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.05494 * 180.02562 * 18 9 8 33 33 H 1.07999 * 119.94612 * 180.02562 * 19 18 9 34 34 H 1.09005 * 109.52535 * 296.80418 * 20 2 1 35 35 H 1.09009 * 109.52081 * 56.98899 * 20 2 1 36 36 H 1.09000 * 109.48191 * 182.41320 * 21 20 2 37 37 H 1.09001 * 109.48686 * 62.37889 * 21 20 2 38 38 H 1.09002 * 109.47904 * 178.86107 * 23 22 21 39 39 H 1.08991 * 109.49382 * 58.82756 * 23 22 21 40 40 H 1.09000 * 109.52567 * 297.70517 * 24 23 22 41 41 H 1.09006 * 109.52004 * 177.51640 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0200 1.3807 0.0000 4 6 1.6925 2.2120 1.0090 5 8 0.9900 1.8161 1.9191 6 6 2.1868 3.6031 1.0093 7 6 2.9906 4.0584 -0.0428 8 6 3.4537 5.3405 -0.0443 9 6 3.1125 6.2114 1.0094 10 6 3.5843 7.5413 1.0092 11 1 4.4878 7.7938 0.4741 12 6 2.8799 8.5351 1.7038 13 7 1.6370 8.3326 2.0521 14 14 3.7185 10.1487 2.1313 15 1 3.4171 11.1561 1.0827 16 1 3.2185 10.6342 3.4426 17 1 5.1865 9.9383 2.2082 18 6 2.2988 5.7504 2.0631 19 6 1.8448 4.4651 2.0584 20 6 2.0443 -0.7262 1.2467 21 6 3.5732 -0.7882 1.1974 22 8 3.9834 -1.4475 -0.0022 23 6 3.5714 -0.7875 -1.2009 24 6 2.0424 -0.7256 -1.2479 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.5802 1.6965 -0.7262 29 1 3.2480 3.3914 -0.8522 30 1 4.0773 5.6895 -0.8540 31 1 1.1499 9.0199 2.5329 32 1 2.0344 6.4145 2.8727 33 1 1.2206 4.1109 2.8655 34 1 1.7302 -0.1848 2.1392 35 1 1.6394 -1.7379 1.2719 36 1 3.9426 -1.3415 2.0608 37 1 3.9788 0.2234 1.2131 38 1 3.9396 -1.3404 -2.0651 39 1 3.9769 0.2241 -1.2168 40 1 1.6375 -1.7373 -1.2731 41 1 1.7271 -0.1837 -2.1396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270536013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:08 Heat of formation + Delta-G solvation = -92.555817 kcal Electronic energy + Delta-G solvation = -23158.170467 eV Core-core repulsion = 19808.312464 eV Total energy + Delta-G solvation = -3349.858004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64476 -39.86270 -38.73697 -36.43115 -35.69363 -33.22667 -32.11717 -31.77264 -31.07243 -29.33714 -27.66512 -24.68871 -24.29446 -23.63483 -22.81130 -21.53283 -20.22921 -19.31671 -18.67025 -17.30856 -16.99783 -16.96925 -16.58154 -15.98232 -15.84085 -15.71828 -15.41210 -15.12012 -14.68908 -14.47744 -14.02525 -13.80588 -13.67036 -13.56042 -13.25936 -13.18050 -12.93355 -12.85755 -12.79476 -12.58421 -12.38138 -12.24589 -11.78775 -11.60466 -11.37928 -11.35521 -11.11146 -10.65673 -10.36396 -9.93929 -9.56904 -9.40650 -8.79386 -6.48392 0.45998 1.14750 1.37125 1.41842 1.54106 2.12423 2.19085 2.36798 2.80362 2.94622 3.59611 3.69357 3.83811 3.89016 4.03300 4.21627 4.28211 4.34026 4.40443 4.43390 4.67553 4.70413 4.71956 4.77646 4.82028 4.94543 4.97033 5.01023 5.07684 5.10908 5.15284 5.22797 5.26236 5.34508 5.58763 5.73066 5.78800 5.96863 6.01775 6.20452 6.22866 6.56002 6.76698 6.77513 6.89838 7.51940 8.15876 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032092 B = 0.003582 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.294260 B = 7815.544256 C = 8138.227348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 N -0.718 5.718 4 C 0.576 3.424 5 O -0.592 6.592 6 C -0.293 4.293 7 C -0.039 4.039 8 C -0.246 4.246 9 C 0.100 3.900 10 C -0.474 4.474 11 H 0.091 0.909 12 C 0.035 3.965 13 N -0.805 5.805 14 Si 0.987 3.013 15 H -0.258 1.258 16 H -0.267 1.267 17 H -0.254 1.254 18 C -0.203 4.203 19 C -0.050 4.050 20 C -0.162 4.162 21 C 0.067 3.933 22 O -0.394 6.394 23 C 0.052 3.948 24 C -0.147 4.147 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.404 0.596 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.295 0.705 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.036 0.964 38 H 0.121 0.879 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -12.154 -6.891 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.085 3.915 3 N -0.370 5.370 4 C 0.369 3.631 5 O -0.476 6.476 6 C -0.297 4.297 7 C -0.058 4.058 8 C -0.265 4.265 9 C 0.097 3.903 10 C -0.502 4.502 11 H 0.109 0.891 12 C -0.184 4.184 13 N -0.428 5.428 14 Si 0.807 3.193 15 H -0.183 1.183 16 H -0.192 1.192 17 H -0.177 1.177 18 C -0.222 4.222 19 C -0.069 4.069 20 C -0.201 4.201 21 C -0.010 4.010 22 O -0.313 6.313 23 C -0.024 4.024 24 C -0.185 4.185 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.241 0.759 29 H 0.149 0.851 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.054 0.946 38 H 0.138 0.862 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.897 -12.528 -6.179 14.097 hybrid contribution -0.075 1.433 0.326 1.471 sum 1.822 -11.095 -5.854 12.676 Atomic orbital electron populations 1.22143 0.94403 1.02827 1.02173 1.20435 0.94271 0.80649 0.96145 1.45934 1.54225 1.11531 1.25358 1.18265 0.78434 0.85290 0.81077 1.90574 1.40824 1.78016 1.38189 1.19258 1.14006 0.94269 1.02180 1.20676 0.94128 0.95253 0.95713 1.20933 1.09869 0.95504 1.00241 1.18139 0.88811 0.93601 0.89721 1.20145 1.09350 0.92938 1.27721 0.89071 1.26999 0.94400 1.04720 0.92267 1.69804 1.09645 1.36516 1.26863 0.85109 0.79732 0.75720 0.78763 1.18278 1.19170 1.17711 1.20924 1.06043 0.94719 1.00562 1.20542 0.96458 0.93396 0.96512 1.22537 0.96808 1.01404 0.99313 1.22474 0.93659 0.96951 0.87891 1.87887 1.77392 1.51698 1.14293 1.22804 0.93615 0.98132 0.87868 1.22469 0.96945 1.02431 0.96676 0.92246 0.90037 0.93470 0.75896 0.85113 0.86737 0.89416 0.88014 0.89089 0.91510 0.89334 0.88216 0.94591 0.86156 0.93251 0.88140 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 8.42 71.98 0.61 -3.47 16 2 C 0.17 4.25 0.66 3.72 0.00 4.26 16 3 N -0.72 -21.27 4.18 -425.41 -1.78 -23.05 16 4 C 0.58 23.07 7.18 86.72 0.62 23.69 16 5 O -0.59 -26.89 12.54 -4.00 -0.05 -26.94 16 6 C -0.29 -13.07 5.89 -19.94 -0.12 -13.19 16 7 C -0.04 -1.57 9.47 22.25 0.21 -1.36 16 8 C -0.25 -11.12 9.73 22.47 0.22 -10.90 16 9 C 0.10 5.19 5.57 -21.28 -0.12 5.07 16 10 C -0.47 -23.85 9.04 23.46 0.21 -23.64 16 11 H 0.09 4.29 7.91 -2.91 -0.02 4.26 16 12 C 0.03 1.64 5.13 85.35 0.44 2.08 16 13 N -0.80 -40.35 10.97 21.87 0.24 -40.11 16 14 Si 0.99 35.38 29.60 68.60 2.03 37.41 16 15 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 16 H -0.27 -9.26 7.11 99.48 0.71 -8.56 16 17 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 18 C -0.20 -10.77 8.63 22.47 0.19 -10.58 16 19 C -0.05 -2.50 9.52 22.25 0.21 -2.28 16 20 C -0.16 -4.31 4.77 30.68 0.15 -4.17 16 21 C 0.07 1.71 6.68 72.01 0.48 2.19 16 22 O -0.39 -9.33 10.77 -148.98 -1.60 -10.93 16 23 C 0.05 0.93 6.67 72.01 0.48 1.41 16 24 C -0.15 -2.53 4.96 30.69 0.15 -2.37 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.05 1.58 6.16 -2.39 -0.01 1.57 16 28 H 0.40 10.20 5.52 -92.71 -0.51 9.69 16 29 H 0.13 4.03 6.37 -2.91 -0.02 4.01 16 30 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.29 13.26 8.29 -92.71 -0.77 12.49 16 32 H 0.10 5.64 6.17 -2.91 -0.02 5.62 16 33 H 0.09 4.60 7.63 -2.91 -0.02 4.58 16 34 H 0.07 2.24 6.14 -2.38 -0.01 2.23 16 35 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.04 1.04 7.75 -2.39 -0.02 1.02 16 38 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 0.90 7.09 -2.39 -0.02 0.89 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -62.15 325.79 3.12 -59.04 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.53 Total: 37.85 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 3.74 Total: -33.27 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -1.54 Total: -63.16 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.65 Total: -37.87 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -62.15 3.12 -59.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270536013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.520 kcal (2) G-P(sol) polarization free energy of solvation -62.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds