Wall clock time and date at job start Tue Mar 31 2020 07:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42905 * 109.52133 * 2 1 4 4 C 1.53032 * 109.49717 * 239.91636 * 2 1 3 5 5 C 1.53045 * 109.53580 * 178.68115 * 4 2 1 6 6 C 1.53197 * 109.31072 * 61.36972 * 5 4 2 7 7 N 1.46928 * 108.77014 * 305.36228 * 6 5 4 8 8 C 1.34782 * 120.63040 * 233.58519 * 7 6 5 9 9 O 1.21579 * 120.00187 * 174.28654 * 8 7 6 10 10 C 1.47645 * 119.99479 * 354.28479 * 8 7 6 11 11 C 1.40009 * 119.89990 * 324.41727 * 10 8 7 12 12 C 1.36313 * 120.11036 * 179.76228 * 11 10 8 13 13 C 1.40897 * 119.88956 * 0.51582 * 12 11 10 14 14 C 1.41099 * 120.10259 * 179.71936 * 13 12 11 15 15 H 1.08007 * 119.99862 * 205.54697 * 14 13 12 16 16 C 1.40224 * 120.00392 * 25.54518 * 14 13 12 17 17 N 1.30645 * 120.00065 * 16.73424 * 16 14 13 18 18 Si 1.86804 * 120.00357 * 196.74355 * 16 14 13 19 19 H 1.48495 * 109.47419 * 89.99432 * 18 16 14 20 20 H 1.48495 * 109.47298 * 210.00108 * 18 16 14 21 21 H 1.48501 * 109.46686 * 329.99964 * 18 16 14 22 22 C 1.40893 * 119.79022 * 359.74218 * 13 12 11 23 23 C 1.36311 * 119.89203 * 359.97438 * 22 13 12 24 24 C 1.46920 * 118.74135 * 53.61597 * 7 6 5 25 25 H 1.08996 * 109.46642 * 180.08489 * 1 2 3 26 26 H 1.09002 * 109.47066 * 300.08107 * 1 2 3 27 27 H 1.09002 * 109.46766 * 60.08135 * 1 2 3 28 28 H 0.96701 * 113.99934 * 59.92157 * 3 2 1 29 29 H 1.09001 * 109.46120 * 58.67025 * 4 2 1 30 30 H 1.08993 * 109.46302 * 298.70016 * 4 2 1 31 31 H 1.09001 * 109.49655 * 181.31538 * 5 4 2 32 32 H 1.08999 * 109.50045 * 301.41473 * 5 4 2 33 33 H 1.08999 * 109.58803 * 65.14767 * 6 5 4 34 34 H 1.09003 * 109.58453 * 185.43573 * 6 5 4 35 35 H 1.08005 * 119.94542 * 0.02562 * 11 10 8 36 36 H 1.07999 * 120.06175 * 180.27717 * 12 11 10 37 37 H 0.96998 * 120.00221 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.05033 * 179.97438 * 22 13 12 39 39 H 1.07995 * 119.94560 * 179.97438 * 23 22 13 40 40 H 1.08999 * 109.59189 * 66.16880 * 24 7 6 41 41 H 1.09003 * 109.58914 * 186.60537 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0076 1.3469 0.0000 4 6 2.0408 -0.7231 -1.2482 5 6 3.5709 -0.6950 -1.2659 6 6 4.1054 -1.4267 -0.0306 7 7 3.5046 -0.8290 1.1697 8 6 4.2811 -0.3862 2.1785 9 8 3.7805 0.1996 3.1189 10 6 5.7396 -0.6127 2.1414 11 6 6.2484 -1.7963 1.5932 12 6 7.5944 -2.0077 1.5524 13 6 8.4736 -1.0375 2.0729 14 6 9.8674 -1.2543 2.0384 15 1 10.5077 -0.7677 2.7594 16 6 10.4214 -2.1015 1.0680 17 7 9.7252 -2.4284 0.0120 18 14 12.1549 -2.7630 1.2853 19 1 12.1045 -4.0506 2.0233 20 1 12.7726 -2.9800 -0.0475 21 1 12.9655 -1.7839 2.0531 22 6 7.9566 0.1496 2.6285 23 6 6.6093 0.3545 2.6596 24 6 2.0413 -0.7238 1.2497 25 1 -0.3632 -1.0277 0.0015 26 1 -0.3633 0.5151 0.8893 27 1 -0.3633 0.5126 -0.8907 28 1 1.7217 1.8656 0.7644 29 1 1.6583 -0.2245 -2.1388 30 1 1.6968 -1.7572 -1.2352 31 1 3.9335 -1.1897 -2.1669 32 1 3.9160 0.3389 -1.2540 33 1 3.8376 -2.4818 -0.0866 34 1 5.1899 -1.3267 0.0125 35 1 5.5735 -2.5412 1.1981 36 1 7.9862 -2.9189 1.1253 37 1 10.1085 -3.0142 -0.6594 38 1 8.6266 0.8958 3.0290 39 1 6.2120 1.2639 3.0856 40 1 1.6053 -1.7216 1.2981 41 1 1.7637 -0.1578 2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271007182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:48 Heat of formation + Delta-G solvation = -70.467231 kcal Electronic energy + Delta-G solvation = -23338.881735 eV Core-core repulsion = 19989.981564 eV Total energy + Delta-G solvation = -3348.900171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.08179 -38.20267 -36.94105 -35.27768 -33.85127 -32.38145 -31.36021 -30.17394 -29.49294 -27.09152 -26.05932 -24.80985 -22.33074 -21.63096 -20.93129 -20.11012 -18.81592 -17.50534 -16.56339 -16.48077 -15.70788 -15.21276 -14.99587 -14.76732 -14.32879 -14.06888 -13.71438 -13.49812 -13.02878 -12.85248 -12.76378 -12.47459 -12.30869 -12.20853 -12.01712 -11.82021 -11.64754 -11.35234 -11.25990 -10.98055 -10.83744 -10.82820 -10.50688 -10.32405 -10.04463 -10.01009 -9.52095 -9.30677 -8.92286 -8.12455 -7.64415 -7.50162 -6.98682 -4.57206 2.31674 2.94302 2.97927 3.00098 3.01786 3.49290 3.75798 3.80083 4.25452 4.51825 4.62977 4.80143 4.87626 5.17883 5.33184 5.37156 5.52708 5.53837 5.62232 5.68364 5.73601 5.84476 5.88833 5.94752 6.03440 6.11049 6.21102 6.28010 6.33390 6.53793 6.79591 6.85486 6.95479 7.08516 7.15488 7.46243 7.63408 7.73267 7.82902 7.87933 8.07660 8.12797 8.42745 8.66753 8.77516 9.00463 9.93276 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029418 B = 0.003988 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.565990 B = 7019.563361 C = 7587.658633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.115 3.885 3 O -0.550 6.550 4 C -0.103 4.103 5 C -0.132 4.132 6 C 0.097 3.903 7 N -0.609 5.609 8 C 0.580 3.420 9 O -0.574 6.574 10 C -0.277 4.277 11 C -0.071 4.071 12 C -0.176 4.176 13 C 0.127 3.873 14 C -0.447 4.447 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.776 5.776 18 Si 0.913 3.087 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.236 4.236 23 C -0.027 4.027 24 C 0.089 3.911 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.374 0.626 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.285 0.715 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 -0.883 -4.413 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.073 3.927 3 O -0.355 6.355 4 C -0.140 4.140 5 C -0.171 4.171 6 C -0.026 4.026 7 N -0.342 5.342 8 C 0.375 3.625 9 O -0.455 6.455 10 C -0.281 4.281 11 C -0.090 4.090 12 C -0.195 4.195 13 C 0.124 3.876 14 C -0.475 4.475 15 H 0.102 0.898 16 C -0.145 4.145 17 N -0.400 5.400 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.255 4.255 23 C -0.047 4.047 24 C -0.035 4.035 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.222 0.778 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.172 -0.911 -4.710 12.158 hybrid contribution 0.376 -0.235 0.381 0.584 sum -10.796 -1.146 -4.330 11.688 Atomic orbital electron populations 1.22435 0.95620 1.02683 1.02600 1.21563 0.91993 0.83362 0.95736 1.86550 1.77318 1.22551 1.49128 1.21504 0.96854 0.99399 0.96285 1.21874 0.94718 1.02529 0.97950 1.22212 1.01347 0.95435 0.83574 1.47780 1.04999 1.62649 1.18766 1.18710 0.87299 0.75979 0.80488 1.90612 1.75824 1.43809 1.35255 1.18839 0.90083 1.00752 1.18420 1.20641 0.95670 0.95367 0.97282 1.20992 0.91463 1.00568 1.06466 1.17765 0.93409 0.89231 0.87177 1.19815 0.92839 1.22570 1.12247 0.89845 1.26053 1.00566 0.94147 0.93765 1.69728 1.38456 1.25765 1.06031 0.86223 0.81152 0.80182 0.78778 1.19012 1.20066 1.18356 1.20700 0.93887 0.98755 1.12169 1.20261 0.93080 0.96450 0.94863 1.22131 0.82029 1.00548 0.98774 0.91567 0.92181 0.91661 0.77849 0.91446 0.90916 0.91045 0.90516 0.92460 0.86696 0.88475 0.86139 0.90353 0.88437 0.88653 0.91708 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.82 37.16 0.33 -1.28 16 2 C 0.12 1.41 1.01 -90.50 -0.09 1.32 16 3 O -0.55 -7.77 12.18 -35.23 -0.43 -8.20 16 4 C -0.10 -1.21 4.92 -26.69 -0.13 -1.34 16 5 C -0.13 -1.83 5.94 -26.61 -0.16 -1.99 16 6 C 0.10 1.53 4.76 -3.71 -0.02 1.52 16 7 N -0.61 -10.72 2.91 -173.95 -0.51 -11.22 16 8 C 0.58 12.61 7.37 -12.42 -0.09 12.52 16 9 O -0.57 -13.73 16.23 5.30 0.09 -13.64 16 10 C -0.28 -6.38 5.31 -104.73 -0.56 -6.94 16 11 C -0.07 -1.58 7.27 -39.61 -0.29 -1.87 16 12 C -0.18 -4.29 8.63 -39.27 -0.34 -4.63 16 13 C 0.13 3.25 5.57 -106.80 -0.59 2.65 16 14 C -0.45 -11.16 9.05 -37.75 -0.34 -11.50 16 15 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 16 C 0.08 1.76 5.15 -17.31 -0.09 1.67 16 17 N -0.78 -18.47 10.94 55.56 0.61 -17.87 16 18 Si 0.91 17.38 29.59 -169.99 -5.03 12.35 16 19 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 22 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 23 C -0.03 -0.65 9.54 -39.61 -0.38 -1.03 16 24 C 0.09 1.28 5.37 -3.71 -0.02 1.26 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.37 4.39 9.05 45.56 0.41 4.80 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.24 7.61 -51.93 -0.40 0.85 16 33 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 34 H 0.12 2.11 4.47 -51.93 -0.23 1.88 16 35 H 0.10 1.92 6.04 -52.48 -0.32 1.60 16 36 H 0.12 2.98 6.18 -52.49 -0.32 2.66 16 37 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 38 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.10 2.17 7.99 -52.49 -0.42 1.75 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -28.88 329.23 -8.45 -37.32 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.99 Total: 12.07 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -3.15 Total: -15.77 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: 0.10 Total: -29.09 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.34 Total: -21.84 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.88 -8.45 -37.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271007182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.143 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds