Wall clock time and date at job start Tue Mar 31 2020 07:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42905 * 109.52133 * 2 1 4 4 C 1.53032 * 109.49717 * 239.91636 * 2 1 3 5 5 C 1.53045 * 109.53580 * 178.68115 * 4 2 1 6 6 C 1.53197 * 109.31072 * 61.36972 * 5 4 2 7 7 N 1.46928 * 108.77014 * 305.36228 * 6 5 4 8 8 C 1.34782 * 120.63040 * 233.58519 * 7 6 5 9 9 O 1.21579 * 120.00187 * 174.28654 * 8 7 6 10 10 C 1.47645 * 119.99479 * 354.28479 * 8 7 6 11 11 C 1.40009 * 119.89990 * 324.41727 * 10 8 7 12 12 C 1.36313 * 120.11036 * 179.76228 * 11 10 8 13 13 C 1.40897 * 119.88956 * 0.51582 * 12 11 10 14 14 C 1.41099 * 120.10259 * 179.71936 * 13 12 11 15 15 H 1.08007 * 119.99862 * 205.54697 * 14 13 12 16 16 C 1.40224 * 120.00392 * 25.54518 * 14 13 12 17 17 N 1.30645 * 120.00065 * 16.73424 * 16 14 13 18 18 Si 1.86804 * 120.00357 * 196.74355 * 16 14 13 19 19 H 1.48495 * 109.47419 * 89.99432 * 18 16 14 20 20 H 1.48495 * 109.47298 * 210.00108 * 18 16 14 21 21 H 1.48501 * 109.46686 * 329.99964 * 18 16 14 22 22 C 1.40893 * 119.79022 * 359.74218 * 13 12 11 23 23 C 1.36311 * 119.89203 * 359.97438 * 22 13 12 24 24 C 1.46920 * 118.74135 * 53.61597 * 7 6 5 25 25 H 1.08996 * 109.46642 * 180.08489 * 1 2 3 26 26 H 1.09002 * 109.47066 * 300.08107 * 1 2 3 27 27 H 1.09002 * 109.46766 * 60.08135 * 1 2 3 28 28 H 0.96701 * 113.99934 * 59.92157 * 3 2 1 29 29 H 1.09001 * 109.46120 * 58.67025 * 4 2 1 30 30 H 1.08993 * 109.46302 * 298.70016 * 4 2 1 31 31 H 1.09001 * 109.49655 * 181.31538 * 5 4 2 32 32 H 1.08999 * 109.50045 * 301.41473 * 5 4 2 33 33 H 1.08999 * 109.58803 * 65.14767 * 6 5 4 34 34 H 1.09003 * 109.58453 * 185.43573 * 6 5 4 35 35 H 1.08005 * 119.94542 * 0.02562 * 11 10 8 36 36 H 1.07999 * 120.06175 * 180.27717 * 12 11 10 37 37 H 0.96998 * 120.00221 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.05033 * 179.97438 * 22 13 12 39 39 H 1.07995 * 119.94560 * 179.97438 * 23 22 13 40 40 H 1.08999 * 109.59189 * 66.16880 * 24 7 6 41 41 H 1.09003 * 109.58914 * 186.60537 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0076 1.3469 0.0000 4 6 2.0408 -0.7231 -1.2482 5 6 3.5709 -0.6950 -1.2659 6 6 4.1054 -1.4267 -0.0306 7 7 3.5046 -0.8290 1.1697 8 6 4.2811 -0.3862 2.1785 9 8 3.7805 0.1996 3.1189 10 6 5.7396 -0.6127 2.1414 11 6 6.2484 -1.7963 1.5932 12 6 7.5944 -2.0077 1.5524 13 6 8.4736 -1.0375 2.0729 14 6 9.8674 -1.2543 2.0384 15 1 10.5077 -0.7677 2.7594 16 6 10.4214 -2.1015 1.0680 17 7 9.7252 -2.4284 0.0120 18 14 12.1549 -2.7630 1.2853 19 1 12.1045 -4.0506 2.0233 20 1 12.7726 -2.9800 -0.0475 21 1 12.9655 -1.7839 2.0531 22 6 7.9566 0.1496 2.6285 23 6 6.6093 0.3545 2.6596 24 6 2.0413 -0.7238 1.2497 25 1 -0.3632 -1.0277 0.0015 26 1 -0.3633 0.5151 0.8893 27 1 -0.3633 0.5126 -0.8907 28 1 1.7217 1.8656 0.7644 29 1 1.6583 -0.2245 -2.1388 30 1 1.6968 -1.7572 -1.2352 31 1 3.9335 -1.1897 -2.1669 32 1 3.9160 0.3389 -1.2540 33 1 3.8376 -2.4818 -0.0866 34 1 5.1899 -1.3267 0.0125 35 1 5.5735 -2.5412 1.1981 36 1 7.9862 -2.9189 1.1253 37 1 10.1085 -3.0142 -0.6594 38 1 8.6266 0.8958 3.0290 39 1 6.2120 1.2639 3.0856 40 1 1.6053 -1.7216 1.2981 41 1 1.7637 -0.1578 2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271007182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:39 Heat of formation + Delta-G solvation = -88.299509 kcal Electronic energy + Delta-G solvation = -23339.655000 eV Core-core repulsion = 19989.981564 eV Total energy + Delta-G solvation = -3349.673436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 6.90 seconds Orbital eigenvalues (eV) -41.47808 -39.65475 -38.65332 -36.58804 -35.63698 -33.59756 -32.54942 -31.80828 -31.35554 -28.41793 -27.40132 -26.26865 -23.57374 -23.29892 -22.67089 -21.29414 -20.29958 -19.34597 -18.04271 -17.74210 -17.38306 -16.74595 -16.11436 -16.03167 -15.78242 -15.44224 -15.18340 -15.03124 -14.50443 -14.33579 -14.18106 -13.79939 -13.66648 -13.63885 -13.29302 -13.04331 -13.02519 -12.83678 -12.61541 -12.55274 -12.39182 -11.95847 -11.90919 -11.75997 -11.36660 -11.31418 -11.13337 -11.06905 -10.60339 -9.56874 -9.49834 -9.31398 -8.75295 -6.46293 0.52129 1.12343 1.39883 1.44444 1.53569 1.98001 2.16928 2.20293 2.73542 3.32640 3.61191 3.65417 3.82340 3.89748 4.07508 4.11149 4.24967 4.37698 4.40294 4.51431 4.57106 4.70315 4.74976 4.80565 4.89073 4.93365 4.96811 5.04387 5.10524 5.17229 5.20735 5.25909 5.30107 5.42888 5.58477 5.66297 5.81624 5.97460 6.00253 6.23349 6.50424 6.55580 6.79629 6.79727 6.89744 7.34838 8.19731 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029418 B = 0.003988 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.565990 B = 7019.563361 C = 7587.658633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 O -0.573 6.573 4 C -0.101 4.101 5 C -0.128 4.128 6 C 0.093 3.907 7 N -0.601 5.601 8 C 0.574 3.426 9 O -0.604 6.604 10 C -0.286 4.286 11 C -0.056 4.056 12 C -0.194 4.194 13 C 0.101 3.899 14 C -0.479 4.479 15 H 0.082 0.918 16 C 0.040 3.960 17 N -0.800 5.800 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.260 1.260 22 C -0.251 4.251 23 C -0.039 4.039 24 C 0.083 3.917 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.381 0.619 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.296 0.704 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 -2.461 -5.787 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.073 3.927 3 O -0.380 6.380 4 C -0.139 4.139 5 C -0.166 4.166 6 C -0.029 4.029 7 N -0.332 5.332 8 C 0.368 3.632 9 O -0.489 6.489 10 C -0.291 4.291 11 C -0.075 4.075 12 C -0.213 4.213 13 C 0.098 3.902 14 C -0.506 4.506 15 H 0.100 0.900 16 C -0.179 4.179 17 N -0.423 5.423 18 Si 0.806 3.194 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.183 1.183 22 C -0.270 4.270 23 C -0.058 4.058 24 C -0.040 4.040 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.229 0.771 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.368 -2.493 -6.120 14.022 hybrid contribution 0.646 0.277 0.755 1.031 sum -11.722 -2.216 -5.365 13.080 Atomic orbital electron populations 1.22351 0.92777 1.04128 1.03186 1.21724 0.94042 0.82205 0.94771 1.86531 1.78052 1.23702 1.49709 1.21577 0.94814 1.01084 0.96395 1.21813 0.96654 1.00490 0.97639 1.22310 0.99727 0.97265 0.83638 1.47797 1.06417 1.61063 1.17932 1.18534 0.87033 0.76382 0.81219 1.90586 1.76168 1.45363 1.36734 1.19132 0.91332 1.00731 1.17874 1.20815 0.95308 0.95473 0.95914 1.21002 0.92267 1.00388 1.07644 1.18100 0.94282 0.89856 0.87934 1.20065 0.92910 1.24327 1.13336 0.89978 1.26856 1.04614 0.93600 0.92832 1.69745 1.40321 1.25751 1.06507 0.85129 0.75825 0.79320 0.79093 1.18441 1.18819 1.18334 1.20828 0.94340 0.98985 1.12890 1.20414 0.93194 0.96986 0.95204 1.22452 0.79712 1.02252 0.99544 0.89658 0.91750 0.91009 0.77091 0.90339 0.88209 0.88978 0.93636 0.89520 0.89611 0.85802 0.86737 0.89248 0.87928 0.88435 0.88978 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 8.82 71.98 0.64 -1.85 16 2 C 0.11 2.49 1.01 -10.71 -0.01 2.48 16 3 O -0.57 -15.65 12.18 -148.98 -1.81 -17.47 16 4 C -0.10 -2.03 4.92 30.62 0.15 -1.88 16 5 C -0.13 -3.28 5.94 30.68 0.18 -3.10 16 6 C 0.09 2.77 4.76 86.36 0.41 3.18 16 7 N -0.60 -20.47 2.91 -822.51 -2.40 -22.86 16 8 C 0.57 25.12 7.37 86.73 0.64 25.76 16 9 O -0.60 -29.38 16.23 -3.97 -0.06 -29.45 16 10 C -0.29 -13.49 5.31 -19.93 -0.11 -13.59 16 11 C -0.06 -2.54 7.27 22.25 0.16 -2.38 16 12 C -0.19 -9.68 8.63 22.47 0.19 -9.49 16 13 C 0.10 5.34 5.57 -21.28 -0.12 5.22 16 14 C -0.48 -24.55 9.05 23.46 0.21 -24.33 16 15 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 16 C 0.04 1.85 5.15 85.35 0.44 2.29 16 17 N -0.80 -38.13 10.94 21.87 0.24 -37.89 16 18 Si 0.99 35.18 29.59 68.60 2.03 37.21 16 19 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 20 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 21 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 22 C -0.25 -12.73 9.73 22.47 0.22 -12.51 16 23 C -0.04 -1.91 9.54 22.25 0.21 -1.70 16 24 C 0.08 2.20 5.37 86.37 0.46 2.66 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.38 8.83 9.05 -74.06 -0.67 8.16 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.04 1.45 7.61 -2.39 -0.02 1.43 16 33 H 0.09 2.12 8.04 -2.39 -0.02 2.10 16 34 H 0.09 3.11 4.47 -2.39 -0.01 3.10 16 35 H 0.12 4.77 6.04 -2.91 -0.02 4.76 16 36 H 0.11 5.78 6.18 -2.91 -0.02 5.76 16 37 H 0.30 12.53 8.29 -92.71 -0.77 11.76 16 38 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 39 H 0.10 4.65 7.99 -2.91 -0.02 4.62 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 Total: -1.00 -64.12 329.23 2.06 -62.06 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: 0.38 Total: 37.62 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.69 Total: -29.23 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -2.16 Total: -60.75 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -1.88 Total: -46.91 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -64.12 2.06 -62.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271007182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.240 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.90 seconds