Wall clock time and date at job start Tue Mar 31 2020 07:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.49852 * 2 1 4 4 C 1.53044 * 109.52372 * 120.08003 * 2 1 3 5 5 C 1.53045 * 109.53753 * 181.33211 * 4 2 1 6 6 C 1.53187 * 109.31306 * 298.63342 * 5 4 2 7 7 N 1.46926 * 108.77626 * 54.63599 * 6 5 4 8 8 C 1.34777 * 120.63517 * 126.40890 * 7 6 5 9 9 O 1.21588 * 120.00703 * 178.39275 * 8 7 6 10 10 C 1.47645 * 119.99427 * 358.39984 * 8 7 6 11 11 C 1.40011 * 119.89796 * 32.57556 * 10 8 7 12 12 C 1.36312 * 120.10736 * 179.76122 * 11 10 8 13 13 C 1.40891 * 119.89181 * 0.50928 * 12 11 10 14 14 C 1.41109 * 120.10369 * 179.71846 * 13 12 11 15 15 H 1.08007 * 119.99772 * 157.34957 * 14 13 12 16 16 C 1.40220 * 120.00145 * 337.34937 * 14 13 12 17 17 N 1.30648 * 120.00338 * 340.11889 * 16 14 13 18 18 Si 1.86801 * 120.00232 * 160.11702 * 16 14 13 19 19 H 1.48503 * 109.47302 * 94.70793 * 18 16 14 20 20 H 1.48498 * 109.47580 * 214.71038 * 18 16 14 21 21 H 1.48503 * 109.47153 * 334.71050 * 18 16 14 22 22 C 1.40888 * 119.79419 * 359.74182 * 13 12 11 23 23 C 1.36322 * 119.88892 * 0.02562 * 22 13 12 24 24 C 1.46931 * 118.74011 * 306.39442 * 7 6 5 25 25 H 1.09003 * 109.47045 * 59.99548 * 1 2 3 26 26 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47290 * 300.00185 * 1 2 3 28 28 H 0.96694 * 114.00065 * 299.93541 * 3 2 1 29 29 H 1.08998 * 109.45986 * 301.34874 * 4 2 1 30 30 H 1.08994 * 109.46245 * 61.31054 * 4 2 1 31 31 H 1.08997 * 109.49574 * 178.68205 * 5 4 2 32 32 H 1.09001 * 109.52289 * 58.60092 * 5 4 2 33 33 H 1.09000 * 109.58734 * 294.85165 * 6 5 4 34 34 H 1.08993 * 109.58919 * 174.42167 * 6 5 4 35 35 H 1.08001 * 119.94712 * 0.02562 * 11 10 8 36 36 H 1.08005 * 120.05748 * 180.22689 * 12 11 10 37 37 H 0.96992 * 120.00213 * 180.02562 * 17 16 14 38 38 H 1.07991 * 120.05683 * 180.02562 * 22 13 12 39 39 H 1.07997 * 119.94566 * 179.97438 * 23 22 13 40 40 H 1.09004 * 109.58240 * 293.81653 * 24 7 6 41 41 H 1.08998 * 109.70594 * 173.46223 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0069 1.3470 0.0000 4 6 2.0414 -0.7230 1.2482 5 6 3.5715 -0.6942 1.2654 6 6 4.1059 -1.4256 0.0301 7 7 3.5047 -0.8282 -1.1701 8 6 4.2806 -0.3850 -2.1790 9 8 3.7701 0.0807 -3.1794 10 6 5.7508 -0.4650 -2.0694 11 6 6.3415 -1.5180 -1.3604 12 6 7.6986 -1.5988 -1.2606 13 6 8.5067 -0.6146 -1.8633 14 6 9.9118 -0.6906 -1.7578 15 1 10.5357 -0.1909 -2.4842 16 6 10.4981 -1.4148 -0.7100 17 7 9.8055 -1.6866 0.3639 18 14 12.2695 -1.9911 -0.8494 19 1 13.1651 -0.9997 -0.2009 20 1 12.4168 -3.3062 -0.1758 21 1 12.6351 -2.1253 -2.2825 22 6 7.9076 0.4460 -2.5713 23 6 6.5498 0.5157 -2.6697 24 6 2.0413 -0.7234 -1.2498 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.7227 1.8649 -0.7655 29 1 1.6588 -0.2246 2.1389 30 1 1.6978 -1.7572 1.2352 31 1 3.9345 -1.1888 2.1664 32 1 3.9165 0.3397 1.2538 33 1 3.8386 -2.4808 0.0860 34 1 5.1901 -1.3230 -0.0148 35 1 5.7210 -2.2698 -0.8954 36 1 8.1535 -2.4134 -0.7166 37 1 10.2111 -2.1872 1.0889 38 1 8.5230 1.2024 -3.0353 39 1 6.0895 1.3285 -3.2118 40 1 1.6056 -1.7215 -1.2982 41 1 1.7610 -0.1589 -2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271007184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:58 Heat of formation + Delta-G solvation = -58.074773 kcal Electronic energy + Delta-G solvation = -23379.683560 eV Core-core repulsion = 20031.320767 eV Total energy + Delta-G solvation = -3348.362793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -40.10829 -38.20445 -36.94518 -35.30153 -33.89047 -32.38394 -31.38358 -30.19976 -29.51401 -27.07613 -26.07290 -24.83280 -22.38942 -21.62696 -20.94111 -20.09703 -18.84833 -17.54560 -16.55979 -16.43038 -15.72295 -15.19058 -14.97508 -14.79672 -14.43191 -14.01512 -13.77749 -13.45636 -13.04893 -12.84445 -12.75275 -12.43158 -12.32254 -12.26167 -11.96009 -11.80973 -11.64315 -11.33714 -11.22612 -10.99547 -10.82901 -10.77446 -10.45269 -10.30907 -10.05277 -10.02037 -9.51169 -9.21703 -8.86086 -8.11817 -7.63342 -7.53042 -7.02538 -4.56967 2.31187 2.91474 2.95541 3.00879 3.02488 3.50870 3.74587 3.81119 4.26288 4.50371 4.64177 4.81425 4.89004 5.19387 5.33533 5.38417 5.52503 5.54492 5.64418 5.69920 5.75975 5.84511 5.89906 5.95804 6.02621 6.08958 6.23798 6.28297 6.35333 6.56615 6.78447 6.83494 6.96541 7.08360 7.15546 7.44631 7.64151 7.73912 7.82466 7.87028 8.07048 8.14104 8.41148 8.65613 8.77314 9.02761 9.88765 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.004058 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.433937 B = 6898.035915 C = 7485.909497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.115 3.885 3 O -0.550 6.550 4 C -0.103 4.103 5 C -0.132 4.132 6 C 0.076 3.924 7 N -0.608 5.608 8 C 0.579 3.421 9 O -0.576 6.576 10 C -0.278 4.278 11 C -0.081 4.081 12 C -0.179 4.179 13 C 0.126 3.874 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.076 3.924 17 N -0.771 5.771 18 Si 0.910 3.090 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.238 4.238 23 C -0.025 4.025 24 C 0.089 3.911 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.374 0.626 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.901 -1.611 4.202 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.073 3.927 3 O -0.355 6.355 4 C -0.141 4.141 5 C -0.170 4.170 6 C -0.046 4.046 7 N -0.340 5.340 8 C 0.375 3.625 9 O -0.457 6.457 10 C -0.283 4.283 11 C -0.099 4.099 12 C -0.198 4.198 13 C 0.123 3.877 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.145 4.145 17 N -0.394 5.394 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.257 4.257 23 C -0.044 4.044 24 C -0.034 4.034 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.221 0.779 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.872 -1.681 4.481 11.879 hybrid contribution 0.350 -0.153 -0.319 0.498 sum -10.522 -1.834 4.162 11.463 Atomic orbital electron populations 1.22433 0.95626 1.02670 1.02596 1.21564 0.91984 0.83355 0.95764 1.86557 1.77424 1.22560 1.48958 1.21507 0.96962 0.99333 0.96253 1.21864 0.94604 1.02604 0.97939 1.22752 1.02766 0.95374 0.83727 1.47759 1.04948 1.62550 1.18770 1.18686 0.87558 0.75080 0.81219 1.90615 1.75956 1.48287 1.30884 1.18814 0.89881 1.04256 1.15302 1.20844 0.95459 0.96903 0.96725 1.21019 0.91937 1.00900 1.05993 1.17757 0.93316 0.88750 0.87894 1.19823 0.92156 1.26287 1.08886 0.89802 1.26077 1.00953 0.93484 0.93978 1.69745 1.38711 1.27301 1.03622 0.86251 0.81303 0.78886 0.80170 1.19267 1.19737 1.18095 1.20669 0.93484 1.00922 1.10630 1.20255 0.93414 0.95885 0.94853 1.22114 0.82107 1.00563 0.98664 0.92192 0.91583 0.91651 0.77908 0.91478 0.90982 0.91117 0.90453 0.92482 0.84998 0.87387 0.86072 0.90281 0.88467 0.88634 0.91794 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.82 37.15 0.33 -1.31 16 2 C 0.11 1.43 1.01 -90.50 -0.09 1.33 16 3 O -0.55 -7.86 12.18 -35.23 -0.43 -8.29 16 4 C -0.10 -1.23 4.92 -26.69 -0.13 -1.36 16 5 C -0.13 -1.85 5.94 -26.61 -0.16 -2.01 16 6 C 0.08 1.20 4.88 -3.71 -0.02 1.19 16 7 N -0.61 -10.79 2.91 -173.95 -0.51 -11.29 16 8 C 0.58 12.67 7.44 -12.42 -0.09 12.58 16 9 O -0.58 -13.87 16.18 5.29 0.09 -13.78 16 10 C -0.28 -6.45 5.55 -104.73 -0.58 -7.03 16 11 C -0.08 -1.80 7.36 -39.61 -0.29 -2.09 16 12 C -0.18 -4.37 8.66 -39.27 -0.34 -4.71 16 13 C 0.13 3.21 5.59 -106.80 -0.60 2.61 16 14 C -0.44 -11.05 9.04 -37.75 -0.34 -11.39 16 15 H 0.08 2.00 7.92 -52.48 -0.42 1.59 16 16 C 0.08 1.77 5.11 -17.31 -0.09 1.68 16 17 N -0.77 -18.20 10.94 55.56 0.61 -17.59 16 18 Si 0.91 17.21 29.60 -169.99 -5.03 12.17 16 19 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 22 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 23 C -0.02 -0.59 9.53 -39.61 -0.38 -0.97 16 24 C 0.09 1.30 5.35 -3.71 -0.02 1.28 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.37 4.42 9.05 45.56 0.41 4.83 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.28 7.61 -51.93 -0.40 0.89 16 33 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.13 2.41 3.55 -53.92 -0.19 2.22 16 35 H 0.11 2.10 5.29 -52.49 -0.28 1.82 16 36 H 0.12 2.98 6.08 -52.48 -0.32 2.66 16 37 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.10 2.19 7.95 -52.49 -0.42 1.77 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.40 7.02 -51.93 -0.36 1.04 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -28.93 328.01 -8.42 -37.35 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -4.91 Total: 12.85 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -3.18 Total: -16.37 kcal Atomic # 7 Polarization: -28.98 SS G_CDS: 0.10 Total: -28.88 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.34 Total: -22.07 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.93 -8.42 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271007184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.721 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds