Wall clock time and date at job start Tue Mar 31 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.49852 * 2 1 4 4 C 1.53044 * 109.52372 * 120.08003 * 2 1 3 5 5 C 1.53045 * 109.53753 * 181.33211 * 4 2 1 6 6 C 1.53187 * 109.31306 * 298.63342 * 5 4 2 7 7 N 1.46926 * 108.77626 * 54.63599 * 6 5 4 8 8 C 1.34777 * 120.63517 * 126.40890 * 7 6 5 9 9 O 1.21588 * 120.00703 * 178.39275 * 8 7 6 10 10 C 1.47645 * 119.99427 * 358.39984 * 8 7 6 11 11 C 1.40011 * 119.89796 * 32.57556 * 10 8 7 12 12 C 1.36312 * 120.10736 * 179.76122 * 11 10 8 13 13 C 1.40891 * 119.89181 * 0.50928 * 12 11 10 14 14 C 1.41109 * 120.10369 * 179.71846 * 13 12 11 15 15 H 1.08007 * 119.99772 * 157.34957 * 14 13 12 16 16 C 1.40220 * 120.00145 * 337.34937 * 14 13 12 17 17 N 1.30648 * 120.00338 * 340.11889 * 16 14 13 18 18 Si 1.86801 * 120.00232 * 160.11702 * 16 14 13 19 19 H 1.48503 * 109.47302 * 94.70793 * 18 16 14 20 20 H 1.48498 * 109.47580 * 214.71038 * 18 16 14 21 21 H 1.48503 * 109.47153 * 334.71050 * 18 16 14 22 22 C 1.40888 * 119.79419 * 359.74182 * 13 12 11 23 23 C 1.36322 * 119.88892 * 0.02562 * 22 13 12 24 24 C 1.46931 * 118.74011 * 306.39442 * 7 6 5 25 25 H 1.09003 * 109.47045 * 59.99548 * 1 2 3 26 26 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47290 * 300.00185 * 1 2 3 28 28 H 0.96694 * 114.00065 * 299.93541 * 3 2 1 29 29 H 1.08998 * 109.45986 * 301.34874 * 4 2 1 30 30 H 1.08994 * 109.46245 * 61.31054 * 4 2 1 31 31 H 1.08997 * 109.49574 * 178.68205 * 5 4 2 32 32 H 1.09001 * 109.52289 * 58.60092 * 5 4 2 33 33 H 1.09000 * 109.58734 * 294.85165 * 6 5 4 34 34 H 1.08993 * 109.58919 * 174.42167 * 6 5 4 35 35 H 1.08001 * 119.94712 * 0.02562 * 11 10 8 36 36 H 1.08005 * 120.05748 * 180.22689 * 12 11 10 37 37 H 0.96992 * 120.00213 * 180.02562 * 17 16 14 38 38 H 1.07991 * 120.05683 * 180.02562 * 22 13 12 39 39 H 1.07997 * 119.94566 * 179.97438 * 23 22 13 40 40 H 1.09004 * 109.58240 * 293.81653 * 24 7 6 41 41 H 1.08998 * 109.70594 * 173.46223 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0069 1.3470 0.0000 4 6 2.0414 -0.7230 1.2482 5 6 3.5715 -0.6942 1.2654 6 6 4.1059 -1.4256 0.0301 7 7 3.5047 -0.8282 -1.1701 8 6 4.2806 -0.3850 -2.1790 9 8 3.7701 0.0807 -3.1794 10 6 5.7508 -0.4650 -2.0694 11 6 6.3415 -1.5180 -1.3604 12 6 7.6986 -1.5988 -1.2606 13 6 8.5067 -0.6146 -1.8633 14 6 9.9118 -0.6906 -1.7578 15 1 10.5357 -0.1909 -2.4842 16 6 10.4981 -1.4148 -0.7100 17 7 9.8055 -1.6866 0.3639 18 14 12.2695 -1.9911 -0.8494 19 1 13.1651 -0.9997 -0.2009 20 1 12.4168 -3.3062 -0.1758 21 1 12.6351 -2.1253 -2.2825 22 6 7.9076 0.4460 -2.5713 23 6 6.5498 0.5157 -2.6697 24 6 2.0413 -0.7234 -1.2498 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.7227 1.8649 -0.7655 29 1 1.6588 -0.2246 2.1389 30 1 1.6978 -1.7572 1.2352 31 1 3.9345 -1.1888 2.1664 32 1 3.9165 0.3397 1.2538 33 1 3.8386 -2.4808 0.0860 34 1 5.1901 -1.3230 -0.0148 35 1 5.7210 -2.2698 -0.8954 36 1 8.1535 -2.4134 -0.7166 37 1 10.2111 -2.1872 1.0889 38 1 8.5230 1.2024 -3.0353 39 1 6.0895 1.3285 -3.2118 40 1 1.6056 -1.7215 -1.2982 41 1 1.7610 -0.1589 -2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271007184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:52 Heat of formation + Delta-G solvation = -76.016448 kcal Electronic energy + Delta-G solvation = -23380.461569 eV Core-core repulsion = 20031.320767 eV Total energy + Delta-G solvation = -3349.140803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.51869 -39.64999 -38.65959 -36.63292 -35.66179 -33.60909 -32.62470 -31.78779 -31.36103 -28.41940 -27.42134 -26.30174 -23.64222 -23.31882 -22.63154 -21.29511 -20.34370 -19.36737 -18.02112 -17.74670 -17.38821 -16.71430 -16.21063 -16.03343 -15.81073 -15.41015 -15.21855 -15.03726 -14.52631 -14.34260 -14.17966 -13.71088 -13.66355 -13.64720 -13.29817 -13.05106 -12.96645 -12.80631 -12.63305 -12.55975 -12.37942 -11.95848 -11.89100 -11.77613 -11.37333 -11.25887 -11.13566 -10.98386 -10.52835 -9.58629 -9.46850 -9.32768 -8.78153 -6.45343 0.52228 1.12316 1.39094 1.43365 1.55460 1.99489 2.16553 2.21129 2.72812 3.32420 3.61366 3.65518 3.82923 3.90062 4.08292 4.09429 4.28110 4.35898 4.40480 4.51585 4.58124 4.70399 4.74881 4.80358 4.88749 4.92870 4.97012 5.03620 5.10838 5.17970 5.20843 5.25494 5.30888 5.43962 5.57964 5.66144 5.82644 5.97383 6.00060 6.22933 6.51793 6.54888 6.78942 6.79224 6.90230 7.36428 8.16535 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.004058 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.433937 B = 6898.035915 C = 7485.909497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 O -0.573 6.573 4 C -0.102 4.102 5 C -0.128 4.128 6 C 0.071 3.929 7 N -0.600 5.600 8 C 0.573 3.427 9 O -0.607 6.607 10 C -0.291 4.291 11 C -0.067 4.067 12 C -0.199 4.199 13 C 0.100 3.900 14 C -0.476 4.476 15 H 0.083 0.917 16 C 0.041 3.959 17 N -0.794 5.794 18 Si 0.985 3.015 19 H -0.261 1.261 20 H -0.260 1.260 21 H -0.260 1.260 22 C -0.254 4.254 23 C -0.037 4.037 24 C 0.083 3.917 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.381 0.619 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.298 0.702 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 -3.266 5.719 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.072 3.928 3 O -0.380 6.380 4 C -0.139 4.139 5 C -0.166 4.166 6 C -0.050 4.050 7 N -0.331 5.331 8 C 0.368 3.632 9 O -0.491 6.491 10 C -0.295 4.295 11 C -0.085 4.085 12 C -0.218 4.218 13 C 0.097 3.903 14 C -0.503 4.503 15 H 0.101 0.899 16 C -0.178 4.178 17 N -0.417 5.417 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.184 1.184 21 H -0.183 1.183 22 C -0.274 4.274 23 C -0.056 4.056 24 C -0.039 4.039 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.229 0.771 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.994 -3.340 6.034 13.836 hybrid contribution 0.598 0.384 -0.735 1.022 sum -11.396 -2.956 5.299 12.911 Atomic orbital electron populations 1.22349 0.92772 1.04124 1.03184 1.21728 0.94041 0.82190 0.94797 1.86538 1.78163 1.23727 1.49559 1.21580 0.94930 1.01038 0.96343 1.21801 0.96550 1.00495 0.97733 1.22820 1.01194 0.97286 0.83690 1.47780 1.06357 1.60945 1.17998 1.18517 0.87298 0.75535 0.81893 1.90587 1.76280 1.49941 1.32338 1.19119 0.91190 1.04176 1.15009 1.21093 0.95011 0.96962 0.95443 1.21046 0.92774 1.00933 1.07024 1.18102 0.94202 0.89403 0.88635 1.20084 0.92235 1.28001 1.09989 0.89924 1.26878 1.05185 0.92788 0.92980 1.69753 1.40658 1.27100 1.04166 0.85148 0.75676 0.78784 0.79951 1.18563 1.18402 1.18337 1.20797 0.93891 1.01303 1.11367 1.20405 0.93506 0.96452 0.95239 1.22428 0.79824 1.02236 0.99426 0.91752 0.89659 0.91007 0.77126 0.90424 0.88228 0.89008 0.93741 0.89311 0.87708 0.84428 0.86536 0.89101 0.87992 0.88507 0.89100 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 8.82 71.98 0.64 -1.90 16 2 C 0.11 2.53 1.01 -10.72 -0.01 2.52 16 3 O -0.57 -15.87 12.18 -148.98 -1.81 -17.68 16 4 C -0.10 -2.07 4.92 30.62 0.15 -1.91 16 5 C -0.13 -3.32 5.94 30.67 0.18 -3.14 16 6 C 0.07 2.13 4.88 86.36 0.42 2.55 16 7 N -0.60 -20.59 2.91 -822.53 -2.40 -22.98 16 8 C 0.57 25.26 7.44 86.73 0.65 25.91 16 9 O -0.61 -29.73 16.18 -3.99 -0.06 -29.80 16 10 C -0.29 -13.77 5.55 -19.93 -0.11 -13.88 16 11 C -0.07 -3.00 7.36 22.25 0.16 -2.84 16 12 C -0.20 -9.89 8.66 22.47 0.19 -9.70 16 13 C 0.10 5.26 5.59 -21.28 -0.12 5.14 16 14 C -0.48 -24.33 9.04 23.46 0.21 -24.12 16 15 H 0.08 4.08 7.92 -2.91 -0.02 4.06 16 16 C 0.04 1.91 5.11 85.35 0.44 2.35 16 17 N -0.79 -37.50 10.94 21.87 0.24 -37.26 16 18 Si 0.98 34.80 29.60 68.60 2.03 36.84 16 19 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 20 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 22 C -0.25 -12.95 9.73 22.47 0.22 -12.73 16 23 C -0.04 -1.83 9.53 22.25 0.21 -1.62 16 24 C 0.08 2.24 5.35 86.36 0.46 2.71 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.38 8.92 9.05 -74.06 -0.67 8.25 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.45 7.61 -2.39 -0.02 1.43 16 33 H 0.09 2.13 8.13 -2.39 -0.02 2.11 16 34 H 0.11 3.74 3.55 -4.26 -0.02 3.73 16 35 H 0.14 5.22 5.29 -2.91 -0.02 5.20 16 36 H 0.12 5.83 6.08 -2.91 -0.02 5.81 16 37 H 0.30 12.40 8.29 -92.71 -0.77 11.63 16 38 H 0.10 4.90 8.06 -2.92 -0.02 4.87 16 39 H 0.10 4.65 7.95 -2.91 -0.02 4.63 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 Total: -1.00 -64.42 328.01 2.06 -62.36 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: 0.37 Total: 39.19 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.69 Total: -30.66 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -2.16 Total: -60.24 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.88 Total: -47.48 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.84 kcal Total: -64.42 2.06 -62.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271007184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.657 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds