Wall clock time and date at job start Tue Mar 31 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37724 * 119.95362 * 2 1 4 4 C 1.39712 * 119.91018 * 179.97438 * 3 2 1 5 5 C 1.47613 * 120.08601 * 179.97438 * 4 3 2 6 6 O 1.21580 * 119.99726 * 330.16147 * 5 4 3 7 7 N 1.34778 * 119.99656 * 150.15950 * 5 4 3 8 8 C 1.46500 * 120.00101 * 6.35742 * 7 5 4 9 9 C 1.50693 * 109.47119 * 98.84572 * 8 7 5 10 10 H 1.08009 * 120.00044 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00183 * 179.97438 * 9 8 7 12 12 N 1.31507 * 119.99961 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99986 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47105 * 60.00438 * 13 11 9 15 15 H 1.48505 * 109.46834 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47240 * 300.00224 * 13 11 9 17 17 C 1.46504 * 119.99572 * 186.36131 * 7 5 4 18 18 C 1.53004 * 109.47086 * 94.55002 * 17 7 5 19 19 C 1.52999 * 117.49622 * 243.49142 * 18 17 7 20 20 C 1.53001 * 117.49587 * 174.83477 * 18 17 7 21 21 C 1.39752 * 119.82876 * 359.73737 * 4 3 2 22 22 C 1.37685 * 119.90760 * 0.53938 * 21 4 3 23 23 C 1.38974 * 119.96227 * 179.97438 * 2 1 3 24 24 O 1.35716 * 119.90475 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47038 * 270.01431 * 1 2 3 26 26 H 1.09000 * 109.47454 * 30.01745 * 1 2 3 27 27 H 1.09007 * 109.47005 * 150.01954 * 1 2 3 28 28 H 1.08003 * 120.04655 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.46827 * 218.84484 * 8 7 5 30 30 H 1.09002 * 109.46897 * 338.84270 * 8 7 5 31 31 H 0.97002 * 120.00220 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.46445 * 214.54688 * 17 7 5 33 33 H 1.08996 * 109.46994 * 334.54546 * 17 7 5 34 34 H 1.08996 * 115.55154 * 29.16256 * 18 17 7 35 35 H 1.08999 * 117.49817 * 0.02562 * 19 18 17 36 36 H 1.08994 * 117.50054 * 145.01920 * 19 18 17 37 37 H 1.08993 * 117.49381 * 214.97643 * 20 18 17 38 38 H 1.08996 * 117.49800 * 359.97438 * 20 18 17 39 39 H 1.07999 * 120.04787 * 180.29164 * 21 4 3 40 40 H 1.07996 * 119.95941 * 179.72972 * 22 21 4 41 41 H 0.96705 * 113.99922 * 270.01698 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1933 0.0000 4 6 3.5917 1.1922 0.0005 5 6 4.3327 2.4689 0.0000 6 8 3.8480 3.4528 -0.5248 7 7 5.5464 2.5439 0.5812 8 6 6.1912 1.3307 1.0898 9 6 7.1942 0.8342 0.0806 10 1 7.3367 1.3686 -0.8471 11 6 7.9299 -0.3024 0.3415 12 7 7.7559 -0.9534 1.4708 13 14 9.1726 -0.9182 -0.9099 14 1 10.1999 0.1283 -1.1435 15 1 9.8263 -2.1479 -0.3943 16 1 8.4791 -1.2250 -2.1866 17 6 6.2207 3.8386 0.7045 18 6 5.9190 4.4421 2.0777 19 6 5.1387 5.7576 2.1152 20 6 6.6324 5.7436 2.4495 21 6 4.2860 -0.0207 0.0066 22 6 3.5912 -1.2094 0.0009 23 6 2.2010 -1.2040 0.0005 24 8 1.5197 -2.3778 0.0016 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6546 2.1286 0.0004 29 1 6.6998 1.5553 2.0273 30 1 5.4368 0.5626 1.2606 31 1 8.2733 -1.7532 1.6542 32 1 7.2965 3.6995 0.5971 33 1 5.8617 4.5109 -0.0747 34 1 5.7335 3.7239 2.8764 35 1 4.8399 6.1929 1.1616 36 1 4.4400 5.9050 2.9387 37 1 6.9158 5.8817 3.4929 38 1 7.3169 6.1696 1.7161 39 1 5.3659 -0.0256 0.0118 40 1 4.1269 -2.1471 0.0011 41 1 1.3224 -2.7172 0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272578107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:50 Heat of formation + Delta-G solvation = -11.360098 kcal Electronic energy + Delta-G solvation = -23236.801205 eV Core-core repulsion = 19890.464112 eV Total energy + Delta-G solvation = -3346.337093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05755 -38.75483 -37.00680 -36.03755 -35.02748 -32.65386 -32.34490 -29.85474 -28.22141 -26.65881 -25.98676 -23.32507 -22.54134 -22.08677 -21.41250 -20.32485 -18.75311 -18.10888 -16.71426 -16.40655 -15.95822 -15.37370 -15.34234 -14.61221 -14.47528 -14.36715 -13.82698 -13.48141 -13.44397 -13.09962 -12.90776 -12.45690 -12.31074 -12.00045 -11.72462 -11.62714 -11.49958 -11.32023 -11.26720 -11.04632 -10.98353 -10.56486 -10.32565 -10.16702 -9.84589 -9.64582 -9.56463 -9.06750 -8.73457 -8.39287 -8.00316 -7.75873 -6.33282 -4.43043 1.31503 1.80420 3.18146 3.23313 3.26045 3.38746 3.78086 4.15295 4.17058 4.29150 4.50255 4.97242 5.06471 5.15039 5.16943 5.24218 5.31890 5.40290 5.59142 5.72019 5.79453 5.84527 5.90233 5.96992 6.11743 6.12697 6.13415 6.23531 6.26463 6.35484 6.50830 6.57901 6.71281 6.75515 6.90369 6.99378 7.12519 7.31832 7.47963 7.62419 7.87193 7.88645 8.28823 8.66402 8.95880 9.25619 10.70984 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.007474 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.667696 B = 3745.373564 C = 6138.640511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.141 4.141 3 C -0.055 4.055 4 C -0.139 4.139 5 C 0.560 3.440 6 O -0.569 6.569 7 N -0.586 5.586 8 C 0.206 3.794 9 C -0.546 4.546 10 H 0.065 0.935 11 C 0.070 3.930 12 N -0.881 5.881 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.149 3.851 18 C -0.160 4.160 19 C -0.178 4.178 20 C -0.179 4.179 21 C -0.083 4.083 22 C -0.155 4.155 23 C 0.116 3.884 24 O -0.500 6.500 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.269 0.731 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.207 0.793 40 H 0.130 0.870 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 2.412 2.373 8.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C -0.074 4.074 4 C -0.142 4.142 5 C 0.349 3.651 6 O -0.451 6.451 7 N -0.314 5.314 8 C 0.087 3.913 9 C -0.584 4.584 10 H 0.084 0.916 11 C -0.135 4.135 12 N -0.518 5.518 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.198 1.198 17 C 0.025 3.975 18 C -0.179 4.179 19 C -0.215 4.215 20 C -0.216 4.216 21 C -0.100 4.100 22 C -0.173 4.173 23 C 0.072 3.928 24 O -0.309 6.309 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.223 0.777 40 H 0.148 0.852 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.801 2.804 1.618 8.446 hybrid contribution 0.789 -0.612 0.068 1.000 sum -7.012 2.192 1.686 7.538 Atomic orbital electron populations 1.20595 0.90966 1.02753 1.01770 1.19946 0.96345 0.92338 1.05556 1.20893 0.92690 0.97261 0.96581 1.19995 0.93687 0.93991 1.06525 1.18203 0.81258 0.87494 0.78149 1.90661 1.69393 1.38150 1.46893 1.47996 1.16961 1.09342 1.57134 1.20355 0.93879 0.81937 0.95178 1.21432 1.21684 1.10809 1.04498 0.91645 1.24987 0.96712 0.96260 0.95584 1.69915 1.40622 1.18231 1.23018 0.86554 0.81325 0.78321 0.81454 1.19903 1.20945 1.19776 1.20866 0.97744 0.84903 0.93970 1.22783 1.04349 0.90727 1.00067 1.22990 0.93921 1.01749 1.02854 1.22901 0.95197 1.01700 1.01824 1.23408 1.05948 0.90027 0.90662 1.21459 0.92665 0.99571 1.03624 1.18600 0.89977 0.84440 0.99817 1.84709 1.76424 1.36638 1.33177 0.91861 0.91762 0.91252 0.85454 0.94811 0.91334 0.92082 0.89833 0.90438 0.87797 0.88754 0.89501 0.89148 0.88888 0.77735 0.85237 0.75872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.78 36.00 0.35 -0.93 16 2 C -0.14 -2.25 5.89 -104.54 -0.62 -2.87 16 3 C -0.06 -0.99 9.23 -39.22 -0.36 -1.35 16 4 C -0.14 -2.84 5.59 -104.96 -0.59 -3.42 16 5 C 0.56 12.26 7.45 -12.43 -0.09 12.17 16 6 O -0.57 -13.29 16.19 5.29 0.09 -13.20 16 7 N -0.59 -12.45 2.47 -176.26 -0.43 -12.88 16 8 C 0.21 4.72 4.66 -5.20 -0.02 4.69 16 9 C -0.55 -13.46 7.53 -34.44 -0.26 -13.72 16 10 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 11 C 0.07 1.73 5.34 -17.82 -0.10 1.63 16 12 N -0.88 -22.60 13.29 55.43 0.74 -21.86 16 13 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 C 0.15 2.79 5.78 -4.04 -0.02 2.77 16 18 C -0.16 -2.63 6.01 -90.62 -0.54 -3.17 16 19 C -0.18 -2.57 10.18 -26.69 -0.27 -2.84 16 20 C -0.18 -2.40 10.25 -26.69 -0.27 -2.67 16 21 C -0.08 -1.72 7.48 -39.22 -0.29 -2.01 16 22 C -0.15 -2.84 9.97 -39.49 -0.39 -3.23 16 23 C 0.12 1.90 6.68 -39.02 -0.26 1.64 16 24 O -0.50 -6.87 12.52 -18.85 -0.24 -7.11 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.07 0.82 7.52 -51.92 -0.39 0.43 16 28 H 0.13 2.16 7.92 -52.48 -0.42 1.75 16 29 H 0.03 0.82 8.13 -51.93 -0.42 0.39 16 30 H 0.07 1.61 3.98 -52.37 -0.21 1.40 16 31 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 32 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 33 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 34 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 35 H 0.09 1.39 8.03 -51.93 -0.42 0.98 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.21 4.71 3.05 -52.49 -0.16 4.55 16 40 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.39 3.44 9.06 45.56 0.41 3.85 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -28.17 342.89 -8.33 -36.50 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.88 Total: 12.08 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -3.74 Total: -13.31 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.30 Total: -34.74 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.15 Total: -20.31 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.17 -8.33 -36.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272578107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.139 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds