Wall clock time and date at job start Tue Mar 31 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37724 * 119.95362 * 2 1 4 4 C 1.39712 * 119.91018 * 179.97438 * 3 2 1 5 5 C 1.47613 * 120.08601 * 179.97438 * 4 3 2 6 6 O 1.21580 * 119.99726 * 330.16147 * 5 4 3 7 7 N 1.34778 * 119.99656 * 150.15950 * 5 4 3 8 8 C 1.46500 * 120.00101 * 6.35742 * 7 5 4 9 9 C 1.50693 * 109.47119 * 98.84572 * 8 7 5 10 10 H 1.08009 * 120.00044 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00183 * 179.97438 * 9 8 7 12 12 N 1.31507 * 119.99961 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99986 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47105 * 60.00438 * 13 11 9 15 15 H 1.48505 * 109.46834 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47240 * 300.00224 * 13 11 9 17 17 C 1.46504 * 119.99572 * 186.36131 * 7 5 4 18 18 C 1.53004 * 109.47086 * 94.55002 * 17 7 5 19 19 C 1.52999 * 117.49622 * 243.49142 * 18 17 7 20 20 C 1.53001 * 117.49587 * 174.83477 * 18 17 7 21 21 C 1.39752 * 119.82876 * 359.73737 * 4 3 2 22 22 C 1.37685 * 119.90760 * 0.53938 * 21 4 3 23 23 C 1.38974 * 119.96227 * 179.97438 * 2 1 3 24 24 O 1.35716 * 119.90475 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47038 * 270.01431 * 1 2 3 26 26 H 1.09000 * 109.47454 * 30.01745 * 1 2 3 27 27 H 1.09007 * 109.47005 * 150.01954 * 1 2 3 28 28 H 1.08003 * 120.04655 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.46827 * 218.84484 * 8 7 5 30 30 H 1.09002 * 109.46897 * 338.84270 * 8 7 5 31 31 H 0.97002 * 120.00220 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.46445 * 214.54688 * 17 7 5 33 33 H 1.08996 * 109.46994 * 334.54546 * 17 7 5 34 34 H 1.08996 * 115.55154 * 29.16256 * 18 17 7 35 35 H 1.08999 * 117.49817 * 0.02562 * 19 18 17 36 36 H 1.08994 * 117.50054 * 145.01920 * 19 18 17 37 37 H 1.08993 * 117.49381 * 214.97643 * 20 18 17 38 38 H 1.08996 * 117.49800 * 359.97438 * 20 18 17 39 39 H 1.07999 * 120.04787 * 180.29164 * 21 4 3 40 40 H 1.07996 * 119.95941 * 179.72972 * 22 21 4 41 41 H 0.96705 * 113.99922 * 270.01698 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1933 0.0000 4 6 3.5917 1.1922 0.0005 5 6 4.3327 2.4689 0.0000 6 8 3.8480 3.4528 -0.5248 7 7 5.5464 2.5439 0.5812 8 6 6.1912 1.3307 1.0898 9 6 7.1942 0.8342 0.0806 10 1 7.3367 1.3686 -0.8471 11 6 7.9299 -0.3024 0.3415 12 7 7.7559 -0.9534 1.4708 13 14 9.1726 -0.9182 -0.9099 14 1 10.1999 0.1283 -1.1435 15 1 9.8263 -2.1479 -0.3943 16 1 8.4791 -1.2250 -2.1866 17 6 6.2207 3.8386 0.7045 18 6 5.9190 4.4421 2.0777 19 6 5.1387 5.7576 2.1152 20 6 6.6324 5.7436 2.4495 21 6 4.2860 -0.0207 0.0066 22 6 3.5912 -1.2094 0.0009 23 6 2.2010 -1.2040 0.0005 24 8 1.5197 -2.3778 0.0016 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6546 2.1286 0.0004 29 1 6.6998 1.5553 2.0273 30 1 5.4368 0.5626 1.2606 31 1 8.2733 -1.7532 1.6542 32 1 7.2965 3.6995 0.5971 33 1 5.8617 4.5109 -0.0747 34 1 5.7335 3.7239 2.8764 35 1 4.8399 6.1929 1.1616 36 1 4.4400 5.9050 2.9387 37 1 6.9158 5.8817 3.4929 38 1 7.3169 6.1696 1.7161 39 1 5.3659 -0.0256 0.0118 40 1 4.1269 -2.1471 0.0011 41 1 1.3224 -2.7172 0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272578107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:49 Heat of formation + Delta-G solvation = -27.026594 kcal Electronic energy + Delta-G solvation = -23237.480556 eV Core-core repulsion = 19890.464112 eV Total energy + Delta-G solvation = -3347.016443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58489 -40.17920 -38.30680 -37.45459 -36.64856 -34.50951 -33.65306 -31.28374 -29.90546 -28.19429 -27.31218 -25.13872 -23.99795 -23.21859 -22.81538 -21.67766 -20.34844 -19.37129 -18.61573 -17.92730 -17.62301 -16.72941 -16.64937 -16.38448 -15.99255 -15.75575 -15.22695 -14.93016 -14.83499 -14.53357 -14.33747 -14.09281 -13.58375 -13.50521 -13.11243 -12.99720 -12.83939 -12.81277 -12.71124 -12.57413 -12.35427 -12.24982 -11.90617 -11.77706 -11.35178 -11.15953 -10.86682 -10.78049 -10.56162 -9.84568 -9.51616 -9.37463 -8.25084 -6.40772 -0.12167 0.39362 1.41870 1.43636 1.50420 1.79661 2.20083 2.39650 2.76071 2.92629 3.03275 3.26987 3.68969 3.82619 3.93617 3.95866 4.00592 4.12563 4.32870 4.38878 4.53229 4.62312 4.75111 4.76603 4.81098 4.84760 4.89767 4.90021 4.97323 4.99763 5.19999 5.25047 5.25241 5.27287 5.42594 5.49276 5.53611 5.62835 5.78924 5.89559 5.97973 6.51043 6.75127 6.84109 7.21462 7.33564 8.78673 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.007474 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.667696 B = 3745.373564 C = 6138.640511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.133 4.133 3 C -0.057 4.057 4 C -0.163 4.163 5 C 0.553 3.447 6 O -0.591 6.591 7 N -0.588 5.588 8 C 0.221 3.779 9 C -0.553 4.553 10 H 0.052 0.948 11 C 0.035 3.965 12 N -0.904 5.904 13 Si 0.950 3.050 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.274 1.274 17 C 0.148 3.852 18 C -0.186 4.186 19 C -0.172 4.172 20 C -0.153 4.153 21 C -0.102 4.102 22 C -0.165 4.165 23 C 0.133 3.867 24 O -0.497 6.497 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.015 0.985 30 H 0.068 0.932 31 H 0.272 0.728 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.180 0.820 40 H 0.133 0.867 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 2.111 2.590 9.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.133 4.133 3 C -0.076 4.076 4 C -0.166 4.166 5 C 0.344 3.656 6 O -0.475 6.475 7 N -0.316 5.316 8 C 0.101 3.899 9 C -0.591 4.591 10 H 0.070 0.930 11 C -0.168 4.168 12 N -0.541 5.541 13 Si 0.775 3.225 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.199 1.199 17 C 0.025 3.975 18 C -0.205 4.205 19 C -0.208 4.208 20 C -0.191 4.191 21 C -0.119 4.119 22 C -0.183 4.183 23 C 0.088 3.912 24 O -0.310 6.310 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.153 0.847 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.196 0.804 40 H 0.151 0.849 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -9.154 2.500 1.861 9.670 hybrid contribution 1.110 -0.576 0.004 1.251 sum -8.044 1.924 1.865 8.479 Atomic orbital electron populations 1.20681 0.87770 1.03750 1.03536 1.20330 0.98478 0.91211 1.03313 1.21047 0.91642 0.98581 0.96344 1.19994 0.94847 0.93025 1.08720 1.18537 0.81323 0.88015 0.77721 1.90623 1.69863 1.39025 1.47963 1.48035 1.17029 1.09713 1.56790 1.20072 0.93397 0.82488 0.93905 1.21491 1.22300 1.11044 1.04254 0.92971 1.25557 0.98024 0.96238 0.96968 1.69985 1.41389 1.18577 1.24188 0.85722 0.79364 0.77969 0.79424 1.19737 1.20194 1.19875 1.20938 0.97090 0.83955 0.95518 1.22602 1.07972 0.91748 0.98215 1.23033 0.95099 0.99514 1.03201 1.23026 0.94687 0.98103 1.03266 1.23060 1.04845 0.91183 0.92858 1.21524 0.93954 0.98790 1.04060 1.18528 0.89215 0.85609 0.97881 1.84648 1.75654 1.35380 1.35360 0.89564 0.90777 0.90277 0.84671 0.96737 0.91528 0.91877 0.90505 0.90987 0.89098 0.89228 0.88087 0.87141 0.87800 0.80367 0.84938 0.72863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 9.78 71.23 0.70 -1.40 16 2 C -0.13 -3.93 5.89 -19.81 -0.12 -4.05 16 3 C -0.06 -2.01 9.23 22.50 0.21 -1.80 16 4 C -0.16 -6.80 5.59 -20.08 -0.11 -6.91 16 5 C 0.55 25.12 7.45 86.72 0.65 25.77 16 6 O -0.59 -28.31 16.19 -3.97 -0.06 -28.38 16 7 N -0.59 -26.14 2.47 -829.82 -2.05 -28.18 16 8 C 0.22 10.65 4.66 85.63 0.40 11.05 16 9 C -0.55 -28.27 7.53 25.60 0.19 -28.08 16 10 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 11 C 0.04 1.77 5.34 84.66 0.45 2.22 16 12 N -0.90 -47.22 13.29 21.45 0.28 -46.93 16 13 Si 0.95 40.66 29.54 68.60 2.03 42.68 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 C 0.15 5.77 5.78 86.38 0.50 6.27 16 18 C -0.19 -6.19 6.01 -10.79 -0.06 -6.25 16 19 C -0.17 -4.79 10.18 30.62 0.31 -4.48 16 20 C -0.15 -3.89 10.25 30.62 0.31 -3.58 16 21 C -0.10 -4.32 7.48 22.51 0.17 -4.15 16 22 C -0.16 -6.01 9.97 22.33 0.22 -5.79 16 23 C 0.13 4.08 6.68 22.63 0.15 4.23 16 24 O -0.50 -12.02 12.52 -90.38 -1.13 -13.15 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 27 H 0.08 1.53 7.52 -2.38 -0.02 1.52 16 28 H 0.14 4.47 7.92 -2.91 -0.02 4.44 16 29 H 0.01 0.74 8.13 -2.38 -0.02 0.72 16 30 H 0.07 3.29 3.98 -2.80 -0.01 3.28 16 31 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 32 H 0.08 3.02 8.11 -2.39 -0.02 3.00 16 33 H 0.07 2.85 6.95 -2.39 -0.02 2.83 16 34 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.09 2.60 8.03 -2.39 -0.02 2.58 16 36 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.18 8.58 3.05 -2.91 -0.01 8.57 16 40 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 41 H 0.41 5.75 9.06 -74.05 -0.67 5.08 16 Total: -1.00 -61.47 342.89 3.42 -58.05 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.38 Total: 32.86 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.97 Total: -16.95 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.76 Total: -75.11 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.20 Total: -41.53 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Total: -61.47 3.42 -58.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272578107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.024 kcal (2) G-P(sol) polarization free energy of solvation -61.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds