Wall clock time and date at job start Tue Mar 31 2020 07:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.52089 * 2 1 4 4 O 1.21284 * 120.00241 * 119.87388 * 3 2 1 5 5 N 1.34779 * 119.99902 * 299.87073 * 3 2 1 6 6 C 1.39244 * 119.99926 * 174.90121 * 5 3 2 7 7 C 1.39484 * 119.83367 * 325.34535 * 6 5 3 8 8 C 1.36376 * 120.16388 * 179.76008 * 7 6 5 9 9 C 1.40863 * 119.83334 * 0.50991 * 8 7 6 10 10 C 1.41154 * 120.16919 * 179.72110 * 9 8 7 11 11 H 1.07992 * 120.00085 * 205.36714 * 10 9 8 12 12 C 1.39909 * 119.99558 * 25.36288 * 10 9 8 13 13 N 1.30870 * 120.00117 * 16.83147 * 12 10 9 14 14 Si 1.86798 * 119.99878 * 196.82126 * 12 10 9 15 15 H 1.48508 * 109.46897 * 60.00345 * 14 12 10 16 16 H 1.48491 * 109.47149 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47239 * 300.00518 * 14 12 10 18 18 C 1.40879 * 119.67047 * 359.74423 * 9 8 7 19 19 C 1.36378 * 119.82619 * 359.97438 * 18 9 8 20 20 C 1.53177 * 109.57252 * 120.15227 * 2 1 3 21 21 C 1.53182 * 109.03683 * 176.91575 * 20 2 1 22 22 C 1.53090 * 109.16137 * 303.02322 * 21 20 2 23 23 O 1.42922 * 109.42132 * 57.61270 * 22 21 20 24 24 C 1.42903 * 114.08322 * 298.84258 * 23 22 21 25 25 H 1.08999 * 109.47544 * 180.12912 * 1 2 3 26 26 H 1.08998 * 109.47459 * 300.12945 * 1 2 3 27 27 H 1.09003 * 109.47315 * 60.12944 * 1 2 3 28 28 H 0.96996 * 119.99981 * 354.90475 * 5 3 2 29 29 H 1.07995 * 119.91587 * 0.02562 * 7 6 5 30 30 H 1.08002 * 120.08284 * 180.25112 * 8 7 6 31 31 H 0.96991 * 120.00174 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.08406 * 179.97438 * 18 9 8 33 33 H 1.08001 * 119.91329 * 180.02562 * 19 18 9 34 34 H 1.08997 * 109.54638 * 296.78678 * 20 2 1 35 35 H 1.09003 * 109.54270 * 56.96282 * 20 2 1 36 36 H 1.08996 * 109.51627 * 62.92855 * 21 20 2 37 37 H 1.08996 * 109.52077 * 183.11532 * 21 20 2 38 38 H 1.09002 * 109.47738 * 177.58635 * 22 21 20 39 39 H 1.08991 * 109.48536 * 297.60997 * 22 21 20 40 40 H 1.08999 * 109.48174 * 301.16747 * 24 23 22 41 41 H 1.08996 * 109.48507 * 181.14543 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4203 0.0000 4 8 2.7293 1.8171 0.9108 5 7 1.7108 2.2497 -1.0122 6 6 2.0860 3.5897 -0.9609 7 6 2.1108 4.2569 0.2638 8 6 2.4820 5.5679 0.3224 9 6 2.8303 6.2512 -0.8591 10 6 3.2098 7.6097 -0.8073 11 1 3.0823 8.2395 -1.6753 12 6 3.7512 8.1404 0.3686 13 7 4.2111 7.3403 1.2965 14 14 3.8176 9.9910 0.6141 15 1 2.4408 10.5458 0.5707 16 1 4.4325 10.2938 1.9314 17 1 4.6328 10.6045 -0.4650 18 6 2.7977 5.5719 -2.0929 19 6 2.4300 4.2593 -2.1350 20 6 2.0431 -0.7249 1.2480 21 6 3.5729 -0.7855 1.1971 22 6 4.0055 -1.4794 -0.0971 23 8 3.4695 -0.7723 -1.2176 24 6 2.0416 -0.7242 -1.2480 25 1 -0.3634 -1.0276 0.0023 26 1 -0.3634 0.5158 0.8888 27 1 -0.3634 0.5118 -0.8912 28 1 1.2171 1.9132 -1.7763 29 1 1.8397 3.7329 1.1683 30 1 2.5046 6.0822 1.2719 31 1 4.5867 7.7082 2.1116 32 1 3.0631 6.0894 -3.0030 33 1 2.4049 3.7371 -3.0801 34 1 1.7291 -0.1826 2.1398 35 1 1.6376 -1.7364 1.2747 36 1 3.9783 0.2260 1.2212 37 1 3.9438 -1.3482 2.0537 38 1 5.0938 -1.4871 -0.1591 39 1 3.6339 -2.5040 -0.1021 40 1 1.6440 -1.7389 -1.2680 41 1 1.7148 -0.1881 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272632866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:51 Heat of formation + Delta-G solvation = -70.565786 kcal Electronic energy + Delta-G solvation = -23328.592786 eV Core-core repulsion = 19979.688342 eV Total energy + Delta-G solvation = -3348.904444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67912 -38.48398 -37.04305 -34.53926 -34.37676 -33.04201 -31.88918 -29.46779 -28.87531 -27.06272 -25.34666 -24.97559 -23.14637 -21.73428 -21.26491 -20.32203 -18.83523 -17.29638 -16.99636 -16.37255 -16.02262 -15.62474 -15.20528 -14.95804 -14.28092 -14.16980 -14.04112 -13.82034 -13.12578 -12.74072 -12.64627 -12.46957 -12.27623 -12.17986 -12.06197 -11.80112 -11.75808 -11.45088 -11.09326 -11.02552 -10.90930 -10.64145 -10.51703 -10.42767 -9.90644 -9.74513 -9.54685 -9.33959 -8.96804 -8.57010 -7.48313 -6.95283 -6.69398 -4.25473 2.63519 3.04300 3.09151 3.12104 3.14261 3.39643 3.72864 3.92601 3.96317 4.47647 4.65723 4.70572 4.77727 5.01328 5.08159 5.17845 5.30586 5.37208 5.49131 5.50439 5.61374 5.72288 5.76197 5.81389 5.92298 6.04849 6.16520 6.20666 6.41518 6.54006 6.86615 7.03903 7.09330 7.12926 7.20236 7.34137 7.63248 7.73329 8.02366 8.08616 8.26278 8.37625 8.66423 8.86247 8.92299 9.06151 10.23408 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028934 B = 0.003819 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.491807 B = 7330.347386 C = 7570.226232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.519 3.481 4 O -0.523 6.523 5 N -0.649 5.649 6 C -0.002 4.002 7 C -0.085 4.085 8 C -0.155 4.155 9 C 0.106 3.894 10 C -0.461 4.461 11 H 0.077 0.923 12 C 0.075 3.925 13 N -0.790 5.790 14 Si 0.909 3.091 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.215 4.215 19 C -0.105 4.105 20 C -0.093 4.093 21 C -0.168 4.168 22 C 0.061 3.939 23 O -0.375 6.375 24 C 0.075 3.925 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.390 0.610 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.281 0.719 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 -15.183 -1.684 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C 0.305 3.695 4 O -0.399 6.399 5 N -0.292 5.292 6 C -0.094 4.094 7 C -0.105 4.105 8 C -0.175 4.175 9 C 0.103 3.897 10 C -0.491 4.491 11 H 0.095 0.905 12 C -0.143 4.143 13 N -0.415 5.415 14 Si 0.733 3.267 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.235 4.235 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.206 4.206 22 C -0.016 4.016 23 O -0.293 6.293 24 C -0.003 4.003 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.224 0.776 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.152 -14.822 -0.915 15.718 hybrid contribution -0.252 0.475 -0.001 0.537 sum -5.404 -14.347 -0.916 15.359 Atomic orbital electron populations 1.21768 0.92060 1.02577 1.03168 1.21523 0.97458 0.94435 0.98777 1.20036 0.80369 0.86158 0.82965 1.90647 1.36627 1.76470 1.36134 1.42946 1.55744 1.08691 1.21805 1.17163 1.14839 0.82508 0.94853 1.20378 1.00553 0.94580 0.95028 1.20973 1.03609 0.93591 0.99330 1.17648 0.88211 0.92978 0.90847 1.19508 1.36356 0.95175 0.98024 0.90461 1.25927 0.92881 1.00329 0.95213 1.69849 1.27354 1.37211 1.07111 0.86369 0.79538 0.82576 0.78224 1.18842 1.20357 1.19034 1.20551 1.11344 0.93969 0.97635 1.20056 1.01988 0.95497 0.94926 1.21388 0.95933 0.99109 0.96628 1.22395 0.96247 1.04445 0.97484 1.22618 0.99065 0.93884 0.86003 1.88005 1.19405 1.76540 1.45397 1.22594 0.81979 0.99335 0.96364 0.91562 0.91534 0.91790 0.77619 0.88310 0.86288 0.90774 0.88693 0.89267 0.90678 0.91762 0.88107 0.91251 0.89016 0.93646 0.92340 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.39 37.16 0.31 -1.06 16 2 C -0.12 -1.51 0.63 -155.53 -0.10 -1.60 16 3 C 0.52 9.34 5.63 -10.99 -0.06 9.28 16 4 O -0.52 -11.66 11.58 5.55 0.06 -11.60 16 5 N -0.65 -11.80 5.08 -9.74 -0.05 -11.85 16 6 C 0.00 -0.03 6.27 -83.57 -0.52 -0.56 16 7 C -0.09 -2.16 8.57 -39.79 -0.34 -2.50 16 8 C -0.16 -4.23 8.63 -39.26 -0.34 -4.56 16 9 C 0.11 2.89 5.57 -106.80 -0.59 2.29 16 10 C -0.46 -12.43 9.04 -37.85 -0.34 -12.77 16 11 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 12 C 0.07 1.91 5.15 -17.34 -0.09 1.82 16 13 N -0.79 -21.20 10.94 55.55 0.61 -20.60 16 14 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 C -0.21 -5.33 9.74 -39.25 -0.38 -5.71 16 19 C -0.10 -2.36 9.90 -39.79 -0.39 -2.76 16 20 C -0.09 -1.14 4.46 -26.55 -0.12 -1.26 16 21 C -0.17 -2.23 5.81 -26.59 -0.15 -2.39 16 22 C 0.06 0.73 6.84 37.20 0.25 0.99 16 23 O -0.38 -5.42 10.45 -35.23 -0.37 -5.79 16 24 C 0.07 0.86 5.46 37.20 0.20 1.06 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.58 7.70 -51.93 -0.40 0.18 16 28 H 0.39 5.63 7.66 -40.82 -0.31 5.31 16 29 H 0.10 2.50 6.48 -52.49 -0.34 2.16 16 30 H 0.12 3.36 6.18 -52.49 -0.32 3.03 16 31 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 32 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.07 1.01 8.02 -51.93 -0.42 0.59 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.77 5.82 -51.93 -0.30 1.47 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.97 7.40 -51.93 -0.38 0.59 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -31.53 327.63 -8.34 -39.87 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.83 Total: 10.80 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.67 Total: -19.73 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.56 Total: -32.44 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.30 Total: -17.38 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.53 -8.34 -39.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272632866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.692 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds