Wall clock time and date at job start Tue Mar 31 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.52089 * 2 1 4 4 O 1.21284 * 120.00241 * 119.87388 * 3 2 1 5 5 N 1.34779 * 119.99902 * 299.87073 * 3 2 1 6 6 C 1.39244 * 119.99926 * 174.90121 * 5 3 2 7 7 C 1.39484 * 119.83367 * 325.34535 * 6 5 3 8 8 C 1.36376 * 120.16388 * 179.76008 * 7 6 5 9 9 C 1.40863 * 119.83334 * 0.50991 * 8 7 6 10 10 C 1.41154 * 120.16919 * 179.72110 * 9 8 7 11 11 H 1.07992 * 120.00085 * 205.36714 * 10 9 8 12 12 C 1.39909 * 119.99558 * 25.36288 * 10 9 8 13 13 N 1.30870 * 120.00117 * 16.83147 * 12 10 9 14 14 Si 1.86798 * 119.99878 * 196.82126 * 12 10 9 15 15 H 1.48508 * 109.46897 * 60.00345 * 14 12 10 16 16 H 1.48491 * 109.47149 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47239 * 300.00518 * 14 12 10 18 18 C 1.40879 * 119.67047 * 359.74423 * 9 8 7 19 19 C 1.36378 * 119.82619 * 359.97438 * 18 9 8 20 20 C 1.53177 * 109.57252 * 120.15227 * 2 1 3 21 21 C 1.53182 * 109.03683 * 176.91575 * 20 2 1 22 22 C 1.53090 * 109.16137 * 303.02322 * 21 20 2 23 23 O 1.42922 * 109.42132 * 57.61270 * 22 21 20 24 24 C 1.42903 * 114.08322 * 298.84258 * 23 22 21 25 25 H 1.08999 * 109.47544 * 180.12912 * 1 2 3 26 26 H 1.08998 * 109.47459 * 300.12945 * 1 2 3 27 27 H 1.09003 * 109.47315 * 60.12944 * 1 2 3 28 28 H 0.96996 * 119.99981 * 354.90475 * 5 3 2 29 29 H 1.07995 * 119.91587 * 0.02562 * 7 6 5 30 30 H 1.08002 * 120.08284 * 180.25112 * 8 7 6 31 31 H 0.96991 * 120.00174 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.08406 * 179.97438 * 18 9 8 33 33 H 1.08001 * 119.91329 * 180.02562 * 19 18 9 34 34 H 1.08997 * 109.54638 * 296.78678 * 20 2 1 35 35 H 1.09003 * 109.54270 * 56.96282 * 20 2 1 36 36 H 1.08996 * 109.51627 * 62.92855 * 21 20 2 37 37 H 1.08996 * 109.52077 * 183.11532 * 21 20 2 38 38 H 1.09002 * 109.47738 * 177.58635 * 22 21 20 39 39 H 1.08991 * 109.48536 * 297.60997 * 22 21 20 40 40 H 1.08999 * 109.48174 * 301.16747 * 24 23 22 41 41 H 1.08996 * 109.48507 * 181.14543 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4203 0.0000 4 8 2.7293 1.8171 0.9108 5 7 1.7108 2.2497 -1.0122 6 6 2.0860 3.5897 -0.9609 7 6 2.1108 4.2569 0.2638 8 6 2.4820 5.5679 0.3224 9 6 2.8303 6.2512 -0.8591 10 6 3.2098 7.6097 -0.8073 11 1 3.0823 8.2395 -1.6753 12 6 3.7512 8.1404 0.3686 13 7 4.2111 7.3403 1.2965 14 14 3.8176 9.9910 0.6141 15 1 2.4408 10.5458 0.5707 16 1 4.4325 10.2938 1.9314 17 1 4.6328 10.6045 -0.4650 18 6 2.7977 5.5719 -2.0929 19 6 2.4300 4.2593 -2.1350 20 6 2.0431 -0.7249 1.2480 21 6 3.5729 -0.7855 1.1971 22 6 4.0055 -1.4794 -0.0971 23 8 3.4695 -0.7723 -1.2176 24 6 2.0416 -0.7242 -1.2480 25 1 -0.3634 -1.0276 0.0023 26 1 -0.3634 0.5158 0.8888 27 1 -0.3634 0.5118 -0.8912 28 1 1.2171 1.9132 -1.7763 29 1 1.8397 3.7329 1.1683 30 1 2.5046 6.0822 1.2719 31 1 4.5867 7.7082 2.1116 32 1 3.0631 6.0894 -3.0030 33 1 2.4049 3.7371 -3.0801 34 1 1.7291 -0.1826 2.1398 35 1 1.6376 -1.7364 1.2747 36 1 3.9783 0.2260 1.2212 37 1 3.9438 -1.3482 2.0537 38 1 5.0938 -1.4871 -0.1591 39 1 3.6339 -2.5040 -0.1021 40 1 1.6440 -1.7389 -1.2680 41 1 1.7148 -0.1881 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272632866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:50 Heat of formation + Delta-G solvation = -90.752720 kcal Electronic energy + Delta-G solvation = -23329.468157 eV Core-core repulsion = 19979.688342 eV Total energy + Delta-G solvation = -3349.779815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94035 -39.95007 -38.69099 -36.25464 -35.50786 -34.75456 -33.00055 -31.44358 -30.74277 -27.88520 -27.05401 -26.01488 -24.50289 -23.20221 -22.94578 -21.93770 -20.27573 -19.25627 -18.35797 -17.78535 -17.20304 -16.96925 -16.64179 -16.18069 -15.80019 -15.47059 -15.34108 -15.25659 -14.74673 -14.48741 -13.98712 -13.72369 -13.60928 -13.57964 -13.26849 -13.15394 -12.97202 -12.87417 -12.78604 -12.71071 -12.32521 -12.00811 -11.75103 -11.68245 -11.53779 -11.38132 -11.20691 -10.70968 -10.52793 -10.18828 -9.46757 -8.86239 -8.61221 -6.27881 0.82180 1.12210 1.36915 1.45955 1.50827 1.85927 2.20192 2.35778 2.76399 2.99316 3.52001 3.66692 3.72102 3.83608 3.99893 4.12849 4.26799 4.41676 4.43464 4.48166 4.55009 4.67846 4.70279 4.73358 4.87333 4.91889 4.95636 5.01620 5.09496 5.19004 5.20641 5.24785 5.29708 5.42147 5.50922 5.66239 5.86449 6.07514 6.11482 6.24379 6.33599 6.66416 6.77477 6.91739 7.00419 7.48170 8.33545 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028934 B = 0.003819 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.491807 B = 7330.347386 C = 7570.226232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C 0.511 3.489 4 O -0.572 6.572 5 N -0.644 5.644 6 C 0.012 3.988 7 C -0.099 4.099 8 C -0.180 4.180 9 C 0.073 3.927 10 C -0.497 4.497 11 H 0.083 0.917 12 C 0.030 3.970 13 N -0.832 5.832 14 Si 0.986 3.014 15 H -0.258 1.258 16 H -0.271 1.271 17 H -0.256 1.256 18 C -0.223 4.223 19 C -0.102 4.102 20 C -0.094 4.094 21 C -0.170 4.170 22 C 0.060 3.940 23 O -0.407 6.407 24 C 0.070 3.930 25 H 0.103 0.897 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.413 0.587 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.286 0.714 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -17.405 -3.400 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C 0.300 3.700 4 O -0.451 6.451 5 N -0.288 5.288 6 C -0.082 4.082 7 C -0.119 4.119 8 C -0.200 4.200 9 C 0.071 3.929 10 C -0.526 4.526 11 H 0.101 0.899 12 C -0.184 4.184 13 N -0.458 5.458 14 Si 0.807 3.193 15 H -0.182 1.182 16 H -0.196 1.196 17 H -0.180 1.180 18 C -0.243 4.243 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.207 4.207 22 C -0.016 4.016 23 O -0.326 6.326 24 C -0.007 4.007 25 H 0.122 0.878 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.250 0.750 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.466 -17.085 -2.666 18.462 hybrid contribution 0.138 0.984 0.530 1.126 sum -6.329 -16.101 -2.136 17.432 Atomic orbital electron populations 1.21814 0.89422 1.05005 1.03047 1.21582 0.99334 0.90191 1.00110 1.21214 0.79049 0.88279 0.81484 1.90648 1.38664 1.77927 1.37885 1.42906 1.55976 1.06867 1.23081 1.17261 1.12479 0.84536 0.93892 1.20399 1.01271 0.94162 0.96057 1.20877 1.05713 0.94550 0.98840 1.17989 0.89354 0.93875 0.91729 1.19813 1.37900 0.95638 0.99255 0.89928 1.26878 0.91694 1.05514 0.94330 1.69941 1.28402 1.39608 1.07846 0.85194 0.79814 0.75811 0.78520 1.18192 1.19557 1.17969 1.20836 1.11083 0.95047 0.97300 1.20416 1.00440 0.94871 0.96477 1.21461 0.95173 1.00954 0.95567 1.22345 0.97165 1.01865 0.99364 1.22719 0.99254 0.95141 0.84463 1.87963 1.21250 1.77258 1.46120 1.22869 0.80683 1.01487 0.95617 0.87825 0.93061 0.90651 0.74996 0.89347 0.88595 0.90313 0.87182 0.85075 0.92843 0.87585 0.93342 0.89556 0.89240 0.90027 0.88276 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.39 71.98 0.60 -1.58 16 2 C -0.11 -2.49 0.63 -52.84 -0.03 -2.52 16 3 C 0.51 18.25 5.63 87.66 0.49 18.74 16 4 O -0.57 -26.68 11.58 -3.04 -0.04 -26.72 16 5 N -0.64 -22.64 5.08 -303.10 -1.54 -24.18 16 6 C 0.01 0.54 6.27 38.56 0.24 0.78 16 7 C -0.10 -5.24 8.57 22.14 0.19 -5.05 16 8 C -0.18 -10.39 8.63 22.48 0.19 -10.20 16 9 C 0.07 4.14 5.57 -21.27 -0.12 4.03 16 10 C -0.50 -27.73 9.04 23.39 0.21 -27.52 16 11 H 0.08 4.34 7.90 -2.91 -0.02 4.31 16 12 C 0.03 1.59 5.15 85.24 0.44 2.03 16 13 N -0.83 -46.92 10.94 21.82 0.24 -46.68 16 14 Si 0.99 39.72 29.59 68.60 2.03 41.75 16 15 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 16 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 17 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 18 C -0.22 -11.11 9.74 22.48 0.22 -10.89 16 19 C -0.10 -4.50 9.90 22.13 0.22 -4.29 16 20 C -0.09 -2.11 4.46 30.71 0.14 -1.97 16 21 C -0.17 -4.38 5.81 30.69 0.18 -4.20 16 22 C 0.06 1.32 6.84 72.01 0.49 1.81 16 23 O -0.41 -10.72 10.45 -148.98 -1.56 -12.27 16 24 C 0.07 1.32 5.46 72.01 0.39 1.71 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.05 7.70 -2.39 -0.02 1.04 16 28 H 0.41 10.73 7.66 -92.71 -0.71 10.02 16 29 H 0.09 4.78 6.48 -2.91 -0.02 4.76 16 30 H 0.10 5.86 6.18 -2.91 -0.02 5.85 16 31 H 0.29 14.73 8.30 -92.72 -0.77 13.96 16 32 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 33 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.05 1.42 8.02 -2.39 -0.02 1.40 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.78 5.82 -2.39 -0.01 1.77 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 1.71 7.40 -2.39 -0.02 1.69 16 Total: -1.00 -74.84 327.63 3.32 -71.51 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.33 Total: 35.72 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 3.86 Total: -39.13 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -1.30 Total: -70.86 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.59 Total: -38.99 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -74.84 3.32 -71.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272632866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.243 kcal (2) G-P(sol) polarization free energy of solvation -74.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds