Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47015 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47012 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00205 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99993 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47089 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47304 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00030 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00201 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00086 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99986 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47074 * 90.00091 * 19 17 15 21 21 H 1.48499 * 109.47125 * 210.00225 * 19 17 15 22 22 H 1.48504 * 109.46995 * 330.00094 * 19 17 15 23 23 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 24 24 C 1.37892 * 119.82327 * 359.97438 * 23 5 4 25 25 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 26 26 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 27 27 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 28 28 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 30 30 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 31 31 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 32 32 H 1.09002 * 109.47272 * 300.00076 * 9 8 6 33 33 H 1.08995 * 109.47284 * 59.99996 * 9 8 6 34 34 H 0.96998 * 119.99678 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.47030 * 299.99665 * 13 12 10 36 36 H 1.09003 * 109.47291 * 59.99809 * 13 12 10 37 37 H 1.09002 * 109.47125 * 299.99869 * 14 13 12 38 38 H 1.09003 * 109.46996 * 59.99891 * 14 13 12 39 39 H 0.97007 * 120.00056 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.09350 * 180.02562 * 23 5 4 41 41 H 1.07999 * 119.91308 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 6 8.0064 -1.0256 0.0065 10 6 8.7599 -2.3307 0.0118 11 8 8.1535 -3.3810 0.0157 12 7 10.1077 -2.3308 0.0131 13 6 10.8402 -3.5995 0.0188 14 6 12.3444 -3.3200 0.0186 15 6 13.0978 -4.6250 0.0251 16 1 12.5579 -5.5603 0.0286 17 6 14.4766 -4.6251 0.0256 18 7 15.1342 -5.7640 0.0307 19 14 15.4107 -3.0074 0.0189 20 1 15.6578 -2.5727 1.4172 21 1 16.7085 -3.1880 -0.6800 22 1 14.6084 -1.9754 -0.6859 23 6 3.5742 -1.2091 0.0060 24 6 2.1953 -1.2008 0.0063 25 1 -0.3634 0.0050 1.0276 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5095 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1467 -0.0104 30 1 6.2385 -1.8730 0.8988 31 1 6.2392 -1.8806 -0.8811 32 1 8.2704 -0.4577 -0.8856 33 1 8.2691 -0.4504 0.8943 34 1 10.5927 -1.4907 0.0104 35 1 10.5760 -4.1676 0.9108 36 1 10.5777 -4.1746 -0.8692 37 1 12.6083 -2.7521 -0.8736 38 1 12.6071 -2.7447 0.9064 39 1 16.1043 -5.7641 0.0314 40 1 4.1099 -2.1469 0.0110 41 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273162375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -73.787991 kcal Electronic energy + Delta-G solvation = -21023.784161 eV Core-core repulsion = 17674.739992 eV Total energy + Delta-G solvation = -3349.044169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.48238 -39.36385 -38.58857 -35.05656 -33.54261 -32.93552 -32.69242 -31.36187 -30.18328 -28.32993 -26.08343 -24.28924 -23.02851 -22.32148 -20.80254 -20.18161 -19.66351 -17.67160 -16.92412 -16.47550 -16.08917 -15.87115 -15.57474 -15.13902 -14.88742 -14.52854 -14.25927 -14.19501 -14.10639 -13.90078 -13.68675 -13.07687 -12.72095 -12.66496 -12.58286 -12.27112 -12.06355 -12.01480 -11.49519 -11.38468 -11.34152 -11.16974 -10.39649 -10.28831 -9.96936 -9.95500 -9.51962 -9.39630 -9.29689 -9.11780 -8.64650 -8.53527 -6.11367 -4.11534 0.30031 0.98726 2.09815 2.91926 3.25565 3.33395 3.34625 3.40372 3.40499 3.92616 4.33501 4.37726 4.39747 4.56182 4.59748 4.77912 4.95296 4.95896 5.05163 5.10816 5.20135 5.21618 5.24541 5.32328 5.51754 5.59492 5.61471 5.69825 5.80151 5.91267 6.02085 6.10798 6.11461 6.20051 6.49261 6.55572 6.75036 7.13262 7.22966 7.25681 7.66412 7.89266 8.42794 8.55287 8.92792 9.48805 11.01592 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046730 B = 0.002161 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.044484 B =12953.804194 C =13516.493890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.057 4.057 3 C -0.137 4.137 4 C -0.058 4.058 5 C -0.176 4.176 6 C 0.398 3.602 7 O -0.455 6.455 8 C -0.149 4.149 9 C -0.133 4.133 10 C 0.506 3.494 11 O -0.551 6.551 12 N -0.726 5.726 13 C 0.129 3.871 14 C -0.023 4.023 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.065 4.065 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.137 0.863 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.187 15.078 -0.065 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.057 4.057 3 C -0.155 4.155 4 C -0.076 4.076 5 C -0.177 4.177 6 C 0.276 3.724 7 O -0.331 6.331 8 C -0.187 4.187 9 C -0.174 4.174 10 C 0.292 3.708 11 O -0.430 6.430 12 N -0.376 5.376 13 C 0.007 3.993 14 C -0.061 4.061 15 C -0.562 4.562 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.084 4.084 24 C -0.153 4.153 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.155 0.845 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -28.091 14.769 -0.069 31.737 hybrid contribution 0.894 1.067 0.019 1.392 sum -27.196 15.835 -0.050 31.471 Atomic orbital electron populations 1.20892 0.90855 1.03208 1.02752 1.20241 0.96424 0.93233 0.95782 1.21033 0.93972 0.97846 1.02636 1.21426 0.94038 0.97875 0.94255 1.20521 0.95007 0.94387 1.07749 1.22565 0.88245 0.90753 0.70830 1.90521 1.71087 1.35031 1.36415 1.21759 0.94309 0.96393 1.06211 1.21462 0.94217 0.96236 1.05438 1.20527 0.82856 0.90952 0.76468 1.90678 1.68271 1.33635 1.50415 1.46344 1.06126 1.11116 1.74018 1.21509 0.92744 0.83465 1.01583 1.19801 0.90636 0.98762 0.96867 1.20921 0.91416 0.92138 1.51691 0.90633 1.25005 0.97623 0.96318 0.94357 1.69905 1.07852 1.25487 1.50406 0.86749 0.79389 0.84395 0.78523 1.20220 1.21258 1.19073 1.21574 0.94356 0.97654 0.94768 1.21071 0.94112 0.97871 1.02245 0.90650 0.91221 0.91110 0.85483 0.84895 0.87389 0.87380 0.88471 0.88464 0.76930 0.91966 0.91950 0.95976 0.96414 0.92551 0.84493 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.00 36.00 0.36 -0.15 16 2 C -0.06 -0.38 5.89 -104.50 -0.62 -1.00 16 3 C -0.14 -0.99 9.68 -39.65 -0.38 -1.38 16 4 C -0.06 -0.51 9.60 -39.11 -0.38 -0.89 16 5 C -0.18 -1.67 5.87 -105.06 -0.62 -2.28 16 6 C 0.40 4.23 7.12 -30.69 -0.22 4.02 16 7 O -0.45 -5.93 15.98 5.57 0.09 -5.85 16 8 C -0.15 -1.53 3.60 -27.88 -0.10 -1.63 16 9 C -0.13 -1.54 4.99 -27.88 -0.14 -1.68 16 10 C 0.51 7.90 7.83 -10.98 -0.09 7.82 16 11 O -0.55 -10.46 15.98 5.56 0.09 -10.37 16 12 N -0.73 -11.85 5.56 -60.30 -0.33 -12.18 16 13 C 0.13 2.63 5.61 -4.05 -0.02 2.61 16 14 C -0.02 -0.53 4.15 -27.89 -0.12 -0.64 16 15 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 16 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 19 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 23 C -0.07 -0.52 9.47 -39.10 -0.37 -0.89 16 24 C -0.14 -0.95 9.68 -39.64 -0.38 -1.33 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 27 H 0.07 0.25 8.08 -51.92 -0.42 -0.17 16 28 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.13 1.15 7.65 -52.49 -0.40 0.75 16 30 H 0.11 1.06 8.04 -51.93 -0.42 0.65 16 31 H 0.11 1.06 8.05 -51.93 -0.42 0.65 16 32 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.40 5.45 8.47 -40.82 -0.35 5.10 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 38 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 40 H 0.14 0.92 7.05 -52.49 -0.37 0.55 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -33.78 351.56 -8.35 -42.13 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.10 Total: 1.68 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -3.50 Total: -10.59 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.44 Total: -38.79 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.18 Total: -16.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.78 -8.35 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273162375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.653 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds