Wall clock time and date at job start Tue Mar 31 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47015 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47012 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00205 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99993 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47089 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47304 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00030 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00201 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00086 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99986 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47074 * 90.00091 * 19 17 15 21 21 H 1.48499 * 109.47125 * 210.00225 * 19 17 15 22 22 H 1.48504 * 109.46995 * 330.00094 * 19 17 15 23 23 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 24 24 C 1.37892 * 119.82327 * 359.97438 * 23 5 4 25 25 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 26 26 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 27 27 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 28 28 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 30 30 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 31 31 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 32 32 H 1.09002 * 109.47272 * 300.00076 * 9 8 6 33 33 H 1.08995 * 109.47284 * 59.99996 * 9 8 6 34 34 H 0.96998 * 119.99678 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.47030 * 299.99665 * 13 12 10 36 36 H 1.09003 * 109.47291 * 59.99809 * 13 12 10 37 37 H 1.09002 * 109.47125 * 299.99869 * 14 13 12 38 38 H 1.09003 * 109.46996 * 59.99891 * 14 13 12 39 39 H 0.97007 * 120.00056 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.09350 * 180.02562 * 23 5 4 41 41 H 1.07999 * 119.91308 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 6 8.0064 -1.0256 0.0065 10 6 8.7599 -2.3307 0.0118 11 8 8.1535 -3.3810 0.0157 12 7 10.1077 -2.3308 0.0131 13 6 10.8402 -3.5995 0.0188 14 6 12.3444 -3.3200 0.0186 15 6 13.0978 -4.6250 0.0251 16 1 12.5579 -5.5603 0.0286 17 6 14.4766 -4.6251 0.0256 18 7 15.1342 -5.7640 0.0307 19 14 15.4107 -3.0074 0.0189 20 1 15.6578 -2.5727 1.4172 21 1 16.7085 -3.1880 -0.6800 22 1 14.6084 -1.9754 -0.6859 23 6 3.5742 -1.2091 0.0060 24 6 2.1953 -1.2008 0.0063 25 1 -0.3634 0.0050 1.0276 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5095 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1467 -0.0104 30 1 6.2385 -1.8730 0.8988 31 1 6.2392 -1.8806 -0.8811 32 1 8.2704 -0.4577 -0.8856 33 1 8.2691 -0.4504 0.8943 34 1 10.5927 -1.4907 0.0104 35 1 10.5760 -4.1676 0.9108 36 1 10.5777 -4.1746 -0.8692 37 1 12.6083 -2.7521 -0.8736 38 1 12.6071 -2.7447 0.9064 39 1 16.1043 -5.7641 0.0314 40 1 4.1099 -2.1469 0.0110 41 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273162375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:24 Heat of formation + Delta-G solvation = -95.001687 kcal Electronic energy + Delta-G solvation = -21024.704056 eV Core-core repulsion = 17674.739992 eV Total energy + Delta-G solvation = -3349.964064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29299 -40.52987 -39.35314 -36.67643 -34.79052 -34.28832 -33.61663 -32.11643 -31.79389 -29.01314 -27.35459 -25.69006 -23.59496 -23.10716 -22.55673 -21.36411 -20.50102 -19.01879 -18.57487 -17.48242 -17.11936 -16.67714 -16.49654 -16.21604 -16.14264 -16.12154 -15.36244 -15.13994 -14.82507 -14.71138 -14.55785 -14.45679 -14.25920 -13.84578 -13.35269 -13.02857 -13.01208 -12.92587 -12.82221 -12.55016 -12.21231 -12.18181 -12.13859 -11.92286 -11.77241 -11.52261 -10.89507 -10.79424 -10.75595 -10.03552 -9.96901 -9.68935 -8.30732 -6.37831 -0.35459 0.41811 1.38250 1.38708 1.40966 1.52214 1.65582 2.22107 2.36070 2.80379 3.02899 3.04324 3.62629 3.85014 3.94500 4.02952 4.03883 4.10911 4.24556 4.38315 4.41274 4.43059 4.49474 4.65260 4.75258 4.78978 4.82100 4.84237 4.85351 4.95749 5.09134 5.16412 5.23361 5.33761 5.40147 5.41537 5.43591 5.59147 5.64757 5.95515 6.21595 6.46153 6.60928 6.70789 7.26409 7.28802 8.85894 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046730 B = 0.002161 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.044484 B =12953.804194 C =13516.493890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.071 4.071 5 C -0.198 4.198 6 C 0.406 3.594 7 O -0.485 6.485 8 C -0.146 4.146 9 C -0.122 4.122 10 C 0.508 3.492 11 O -0.587 6.587 12 N -0.720 5.720 13 C 0.144 3.856 14 C -0.015 4.015 15 C -0.540 4.540 16 H 0.030 0.970 17 C 0.004 3.996 18 N -0.949 5.949 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.238 1.238 23 C -0.069 4.069 24 C -0.142 4.142 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.414 0.586 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.268 0.732 40 H 0.146 0.854 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.628 17.645 -0.082 34.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.056 4.056 3 C -0.160 4.160 4 C -0.090 4.090 5 C -0.199 4.199 6 C 0.287 3.713 7 O -0.363 6.363 8 C -0.184 4.184 9 C -0.162 4.162 10 C 0.296 3.704 11 O -0.468 6.468 12 N -0.371 5.371 13 C 0.020 3.980 14 C -0.052 4.052 15 C -0.578 4.578 16 H 0.048 0.952 17 C -0.193 4.193 18 N -0.589 5.589 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.161 1.161 23 C -0.087 4.087 24 C -0.160 4.160 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.164 0.836 29 H 0.146 0.854 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.250 0.750 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.164 0.836 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -29.563 17.363 -0.086 34.285 hybrid contribution 1.209 0.151 0.028 1.219 sum -28.354 17.514 -0.058 33.327 Atomic orbital electron populations 1.20957 0.88880 1.04197 1.03590 1.20615 0.97931 0.92885 0.94208 1.21297 0.93441 0.99097 1.02139 1.21534 0.94943 0.97588 0.94893 1.20512 0.94370 0.95287 1.09688 1.22642 0.88837 0.90193 0.69650 1.90508 1.71662 1.35822 1.38282 1.21752 0.93489 0.96456 1.06708 1.21430 0.94265 0.93713 1.06776 1.21203 0.82364 0.91939 0.74939 1.90667 1.68862 1.35414 1.51813 1.46130 1.06505 1.10250 1.74207 1.21024 0.91919 0.85080 0.99998 1.19665 0.91343 0.96216 0.98010 1.21265 0.92087 0.92905 1.51538 0.95202 1.26073 0.98737 1.00776 0.93707 1.70074 1.08383 1.28542 1.51948 0.85550 0.77703 0.79378 0.79318 1.19027 1.21211 1.16123 1.21742 0.95025 0.97494 0.94479 1.21388 0.93872 0.99008 1.01688 0.89728 0.90274 0.90162 0.83558 0.85381 0.86937 0.86936 0.87049 0.87025 0.74998 0.93702 0.93717 0.94576 0.94711 0.92332 0.83618 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.00 71.23 0.71 0.02 16 2 C -0.06 -0.64 5.89 -19.79 -0.12 -0.76 16 3 C -0.14 -1.85 9.68 22.23 0.22 -1.63 16 4 C -0.07 -1.23 9.60 22.58 0.22 -1.01 16 5 C -0.20 -3.62 5.87 -20.15 -0.12 -3.73 16 6 C 0.41 8.33 7.12 28.03 0.20 8.53 16 7 O -0.48 -12.32 15.98 -2.97 -0.05 -12.37 16 8 C -0.15 -2.84 3.60 29.85 0.11 -2.73 16 9 C -0.12 -2.59 4.99 29.85 0.15 -2.44 16 10 C 0.51 15.21 7.83 87.66 0.69 15.89 16 11 O -0.59 -22.07 15.98 -3.04 -0.05 -22.12 16 12 N -0.72 -22.32 5.56 -463.06 -2.57 -24.89 16 13 C 0.14 5.85 5.61 86.38 0.48 6.33 16 14 C -0.01 -0.65 4.15 29.84 0.12 -0.53 16 15 C -0.54 -30.93 9.66 25.60 0.25 -30.69 16 16 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 17 C 0.00 0.25 5.47 84.66 0.46 0.71 16 18 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 19 Si 0.96 42.64 27.47 68.60 1.88 44.53 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 23 C -0.07 -1.03 9.47 22.58 0.21 -0.82 16 24 C -0.14 -1.73 9.68 22.23 0.22 -1.51 16 25 H 0.08 0.37 8.14 -2.39 -0.02 0.36 16 26 H 0.08 0.33 8.08 -2.39 -0.02 0.31 16 27 H 0.08 0.33 8.08 -2.38 -0.02 0.31 16 28 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.13 2.22 7.65 -2.91 -0.02 2.20 16 30 H 0.11 2.09 8.04 -2.39 -0.02 2.07 16 31 H 0.11 2.09 8.05 -2.39 -0.02 2.08 16 32 H 0.11 2.11 8.10 -2.39 -0.02 2.09 16 33 H 0.11 2.11 8.10 -2.39 -0.02 2.09 16 34 H 0.41 10.17 8.47 -92.71 -0.79 9.38 16 35 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 38 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 39 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 40 H 0.15 1.79 7.05 -2.91 -0.02 1.77 16 41 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -74.65 351.56 3.50 -71.15 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.19 Total: 17.10 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.80 Total: -14.36 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -2.27 Total: -83.94 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.10 Total: -34.48 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.53 kcal Total: -74.65 3.50 -71.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273162375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.852 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds