Wall clock time and date at job start Tue Mar 31 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37980 * 119.82522 * 2 1 4 4 C 1.39241 * 120.23977 * 180.33543 * 3 2 1 5 5 C 1.38938 * 118.87312 * 359.04681 * 4 3 2 6 6 C 1.37697 * 120.78343 * 1.09348 * 5 4 3 7 7 C 1.38244 * 119.82922 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.11197 * 0.15685 * 7 2 1 9 9 C 1.51646 * 107.03380 * 181.09071 * 5 4 3 10 10 H 1.08997 * 110.93651 * 257.34481 * 9 5 4 11 11 C 1.50701 * 110.93553 * 133.66560 * 9 5 4 12 12 O 1.21283 * 119.99984 * 0.02562 * 11 9 5 13 13 N 1.34779 * 120.00009 * 179.97438 * 11 9 5 14 14 C 1.46495 * 120.00078 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47226 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47249 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00266 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00539 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99514 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00585 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47104 * 59.99931 * 20 18 16 22 22 H 1.48495 * 109.47449 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46996 * 300.00207 * 20 18 16 24 24 C 1.54705 * 101.94045 * 15.50681 * 9 5 4 25 25 O 1.36127 * 129.90183 * 179.36116 * 4 3 2 26 26 H 1.08999 * 109.46733 * 90.00637 * 1 2 3 27 27 H 1.09001 * 109.47076 * 210.00104 * 1 2 3 28 28 H 1.08990 * 109.47427 * 330.00446 * 1 2 3 29 29 H 1.08002 * 119.87675 * 0.05077 * 3 2 1 30 30 H 1.07997 * 120.00870 * 179.39283 * 6 5 4 31 31 H 1.09005 * 109.47055 * 90.00450 * 8 7 2 32 32 H 1.09003 * 109.47466 * 210.00375 * 8 7 2 33 33 H 1.08995 * 109.47319 * 330.00703 * 8 7 2 34 34 H 0.97005 * 119.99972 * 359.97438 * 13 11 9 35 35 H 1.09002 * 109.46665 * 299.99975 * 14 13 11 36 36 H 1.08994 * 109.47513 * 59.99304 * 14 13 11 37 37 H 1.08999 * 109.46565 * 299.99312 * 15 14 13 38 38 H 1.08996 * 109.46936 * 59.99040 * 15 14 13 39 39 H 0.96993 * 119.99868 * 179.97438 * 19 18 16 40 40 H 1.08999 * 110.74848 * 93.06549 * 24 9 5 41 41 H 1.08998 * 110.75155 * 216.41916 * 24 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1970 0.0000 4 6 3.5856 1.2071 -0.0070 5 6 4.2653 -0.0045 0.0062 6 6 3.5785 -1.1980 0.0034 7 6 2.1946 -1.1993 -0.0005 8 6 1.4398 -2.5036 -0.0047 9 6 5.7471 0.3176 0.0221 10 1 6.1866 0.1780 -0.9656 11 6 6.4678 -0.5132 1.0524 12 8 5.8511 -1.3082 1.7296 13 7 7.7977 -0.3735 1.2205 14 6 8.4984 -1.1815 2.2217 15 6 9.9875 -0.8303 2.2093 16 6 10.7081 -1.6610 3.2395 17 1 10.1589 -2.3684 3.8432 18 6 12.0686 -1.5180 3.4117 19 7 12.7375 -0.6569 2.6763 20 14 12.9618 -2.5472 4.6893 21 1 12.7897 -3.9879 4.3728 22 1 14.4073 -2.2073 4.6763 23 1 12.3984 -2.2651 6.0340 24 6 5.7455 1.8125 0.4201 25 8 4.4512 2.2577 -0.0200 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5137 29 1 1.6484 2.1295 0.0008 30 1 4.1197 -2.1326 0.0039 31 1 1.2603 -2.8163 -1.0334 32 1 2.0268 -3.2648 0.5092 33 1 0.4863 -2.3732 0.5070 34 1 8.2911 0.2616 0.6780 35 1 8.0850 -0.9752 3.2089 36 1 8.3720 -2.2387 1.9886 37 1 10.4011 -1.0363 1.2220 38 1 10.1134 0.2270 2.4426 39 1 13.6945 -0.5561 2.7976 40 1 5.8459 1.9248 1.4997 41 1 6.5369 2.3517 -0.1005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274601863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:36 Heat of formation + Delta-G solvation = -60.838646 kcal Electronic energy + Delta-G solvation = -22209.549947 eV Core-core repulsion = 18861.067304 eV Total energy + Delta-G solvation = -3348.482644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.48595 -39.01809 -38.21003 -34.98078 -33.32957 -32.91985 -32.09422 -31.27931 -29.44949 -27.10191 -26.46429 -25.08447 -23.35261 -22.40341 -21.11292 -20.67937 -19.90462 -17.41891 -17.21139 -16.61956 -16.31999 -15.60236 -15.30114 -14.99375 -14.63979 -14.42752 -14.36734 -14.16174 -13.83692 -13.47399 -13.01366 -12.96110 -12.86170 -12.46841 -12.31624 -12.14784 -12.13903 -11.96622 -11.42819 -11.26606 -11.05393 -10.84433 -10.69001 -10.64362 -10.37904 -9.86926 -9.53552 -9.26904 -8.78703 -8.62173 -8.41741 -8.04234 -6.13214 -4.16390 1.17703 1.33736 2.79935 3.09827 3.28634 3.32587 3.34352 3.41749 3.75467 4.16106 4.38487 4.42310 4.72389 4.78695 4.83019 4.90819 5.07044 5.11982 5.23306 5.23875 5.31910 5.37159 5.48397 5.50491 5.56149 5.66508 5.69534 5.86424 6.06778 6.19574 6.27023 6.27697 6.37089 6.50897 6.60462 6.66634 6.80545 7.10101 7.45665 7.55727 7.84179 7.89112 8.22502 8.51693 8.89222 9.48710 10.98331 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.002917 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.875479 B = 9596.402341 C =10274.577076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.141 4.141 4 C 0.104 3.896 5 C -0.150 4.150 6 C -0.035 4.035 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.103 4.103 10 H 0.120 0.880 11 C 0.515 3.485 12 O -0.534 6.534 13 N -0.720 5.720 14 C 0.121 3.879 15 C 0.013 3.987 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.065 3.935 25 O -0.302 6.302 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.133 3.578 -8.848 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.159 4.159 4 C 0.059 3.941 5 C -0.151 4.151 6 C -0.054 4.054 7 C -0.120 4.120 8 C -0.166 4.166 9 C -0.124 4.124 10 H 0.137 0.863 11 C 0.299 3.701 12 O -0.411 6.411 13 N -0.370 5.370 14 C -0.001 4.001 15 C -0.024 4.024 16 C -0.562 4.562 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.010 4.010 25 O -0.216 6.216 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.401 3.293 -8.419 23.232 hybrid contribution 1.253 -0.245 0.436 1.349 sum -20.148 3.048 -7.983 21.885 Atomic orbital electron populations 1.20849 0.90795 1.03032 1.02442 1.19401 0.95856 0.91605 0.98515 1.19974 0.89637 0.98434 1.07883 1.19477 0.91387 0.85955 0.97263 1.20165 0.92951 0.94013 1.07979 1.20192 0.92791 0.96950 0.95417 1.19604 0.93101 0.95029 1.04305 1.20763 0.99862 0.93950 1.02062 1.21587 0.93863 0.96009 1.00989 0.86254 1.19991 0.82652 0.83551 0.83922 1.90695 1.66552 1.36953 1.46927 1.46354 1.07316 1.42822 1.40475 1.21758 0.94802 0.93923 0.89581 1.19317 0.87384 0.97662 0.98057 1.21005 0.92891 1.22410 1.19916 0.92308 1.24994 0.97595 0.95427 0.96222 1.69941 1.08356 1.35211 1.39780 0.86564 0.78445 0.80645 0.81842 1.20094 1.21206 1.20088 1.23813 0.84340 0.91536 1.01343 1.86811 1.19869 1.32591 1.82314 0.90970 0.90867 0.91513 0.85563 0.85488 0.91439 0.91503 0.91301 0.76857 0.92484 0.92462 0.95913 0.95913 0.92738 0.89855 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.59 36.00 0.35 -0.52 16 2 C -0.05 -0.59 5.87 -104.72 -0.61 -1.20 16 3 C -0.14 -1.69 9.71 -39.30 -0.38 -2.07 16 4 C 0.10 1.43 7.04 -38.95 -0.27 1.16 16 5 C -0.15 -2.14 5.39 -104.09 -0.56 -2.70 16 6 C -0.04 -0.49 8.74 -39.72 -0.35 -0.84 16 7 C -0.12 -1.42 5.89 -104.56 -0.62 -2.04 16 8 C -0.11 -0.99 9.61 36.01 0.35 -0.64 16 9 C -0.10 -1.34 3.52 -91.56 -0.32 -1.66 16 10 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.51 8.49 7.06 -10.98 -0.08 8.41 16 12 O -0.53 -10.78 15.18 5.56 0.08 -10.70 16 13 N -0.72 -11.93 5.56 -60.30 -0.33 -12.26 16 14 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.07 0.75 7.54 38.05 0.29 1.04 16 25 O -0.30 -4.02 11.10 -20.14 -0.22 -4.24 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.13 1.79 7.81 -52.49 -0.41 1.38 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.07 0.51 5.94 -51.93 -0.31 0.20 16 34 H 0.40 5.54 8.47 -40.82 -0.35 5.19 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 41 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -32.31 342.70 -8.35 -40.66 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.97 Total: 1.79 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.79 Total: -11.50 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.40 Total: -37.35 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.14 Total: -14.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.31 -8.35 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274601863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.178 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds