Wall clock time and date at job start Tue Mar 31 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37980 * 119.82522 * 2 1 4 4 C 1.39241 * 120.23977 * 180.33543 * 3 2 1 5 5 C 1.38938 * 118.87312 * 359.04681 * 4 3 2 6 6 C 1.37697 * 120.78343 * 1.09348 * 5 4 3 7 7 C 1.38244 * 119.82922 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.11197 * 0.15685 * 7 2 1 9 9 C 1.51646 * 107.03380 * 181.09071 * 5 4 3 10 10 H 1.08997 * 110.93651 * 257.34481 * 9 5 4 11 11 C 1.50701 * 110.93553 * 133.66560 * 9 5 4 12 12 O 1.21283 * 119.99984 * 0.02562 * 11 9 5 13 13 N 1.34779 * 120.00009 * 179.97438 * 11 9 5 14 14 C 1.46495 * 120.00078 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47226 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47249 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00266 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00539 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99514 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00585 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47104 * 59.99931 * 20 18 16 22 22 H 1.48495 * 109.47449 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46996 * 300.00207 * 20 18 16 24 24 C 1.54705 * 101.94045 * 15.50681 * 9 5 4 25 25 O 1.36127 * 129.90183 * 179.36116 * 4 3 2 26 26 H 1.08999 * 109.46733 * 90.00637 * 1 2 3 27 27 H 1.09001 * 109.47076 * 210.00104 * 1 2 3 28 28 H 1.08990 * 109.47427 * 330.00446 * 1 2 3 29 29 H 1.08002 * 119.87675 * 0.05077 * 3 2 1 30 30 H 1.07997 * 120.00870 * 179.39283 * 6 5 4 31 31 H 1.09005 * 109.47055 * 90.00450 * 8 7 2 32 32 H 1.09003 * 109.47466 * 210.00375 * 8 7 2 33 33 H 1.08995 * 109.47319 * 330.00703 * 8 7 2 34 34 H 0.97005 * 119.99972 * 359.97438 * 13 11 9 35 35 H 1.09002 * 109.46665 * 299.99975 * 14 13 11 36 36 H 1.08994 * 109.47513 * 59.99304 * 14 13 11 37 37 H 1.08999 * 109.46565 * 299.99312 * 15 14 13 38 38 H 1.08996 * 109.46936 * 59.99040 * 15 14 13 39 39 H 0.96993 * 119.99868 * 179.97438 * 19 18 16 40 40 H 1.08999 * 110.74848 * 93.06549 * 24 9 5 41 41 H 1.08998 * 110.75155 * 216.41916 * 24 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1970 0.0000 4 6 3.5856 1.2071 -0.0070 5 6 4.2653 -0.0045 0.0062 6 6 3.5785 -1.1980 0.0034 7 6 2.1946 -1.1993 -0.0005 8 6 1.4398 -2.5036 -0.0047 9 6 5.7471 0.3176 0.0221 10 1 6.1866 0.1780 -0.9656 11 6 6.4678 -0.5132 1.0524 12 8 5.8511 -1.3082 1.7296 13 7 7.7977 -0.3735 1.2205 14 6 8.4984 -1.1815 2.2217 15 6 9.9875 -0.8303 2.2093 16 6 10.7081 -1.6610 3.2395 17 1 10.1589 -2.3684 3.8432 18 6 12.0686 -1.5180 3.4117 19 7 12.7375 -0.6569 2.6763 20 14 12.9618 -2.5472 4.6893 21 1 12.7897 -3.9879 4.3728 22 1 14.4073 -2.2073 4.6763 23 1 12.3984 -2.2651 6.0340 24 6 5.7455 1.8125 0.4201 25 8 4.4512 2.2577 -0.0200 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5137 29 1 1.6484 2.1295 0.0008 30 1 4.1197 -2.1326 0.0039 31 1 1.2603 -2.8163 -1.0334 32 1 2.0268 -3.2648 0.5092 33 1 0.4863 -2.3732 0.5070 34 1 8.2911 0.2616 0.6780 35 1 8.0850 -0.9752 3.2089 36 1 8.3720 -2.2387 1.9886 37 1 10.4011 -1.0363 1.2220 38 1 10.1134 0.2270 2.4426 39 1 13.6945 -0.5561 2.7976 40 1 5.8459 1.9248 1.4997 41 1 6.5369 2.3517 -0.1005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274601863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:33 Heat of formation + Delta-G solvation = -80.967378 kcal Electronic energy + Delta-G solvation = -22210.422795 eV Core-core repulsion = 18861.067304 eV Total energy + Delta-G solvation = -3349.355491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.49660 -40.35696 -39.12755 -36.66235 -34.87418 -34.30383 -32.97299 -32.39410 -31.09815 -27.95908 -27.28631 -26.87781 -24.61163 -23.37171 -22.81616 -21.76258 -21.14674 -18.74847 -18.36174 -18.16365 -17.47070 -16.82197 -16.59986 -16.47960 -16.33820 -15.64911 -15.29297 -15.09123 -14.91399 -14.67843 -14.42516 -14.29731 -13.88680 -13.55063 -13.29822 -13.22717 -13.14615 -12.96303 -12.90936 -12.80325 -12.55543 -12.24839 -12.15962 -11.77445 -11.66312 -11.55523 -11.48557 -10.91086 -10.61443 -10.09024 -9.72052 -8.98052 -8.25553 -6.35933 0.23792 0.37303 1.40984 1.42749 1.47986 1.50843 2.07847 2.21291 2.41683 2.72063 3.09352 3.14360 3.45903 3.74795 3.85422 3.96639 3.99750 4.27336 4.29636 4.34011 4.45118 4.47237 4.53433 4.56305 4.73368 4.76046 4.79774 4.83098 4.94542 5.03533 5.13987 5.21946 5.25190 5.31902 5.42314 5.45783 5.56771 5.63627 5.72688 5.76841 6.14422 6.16954 6.53649 6.77011 7.17038 7.33416 8.85964 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.002917 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.875479 B = 9596.402341 C =10274.577076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.147 4.147 4 C 0.085 3.915 5 C -0.175 4.175 6 C -0.058 4.058 7 C -0.127 4.127 8 C -0.109 4.109 9 C -0.095 4.095 10 H 0.145 0.855 11 C 0.518 3.482 12 O -0.574 6.574 13 N -0.712 5.712 14 C 0.141 3.859 15 C 0.024 3.976 16 C -0.549 4.549 17 H 0.057 0.943 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.269 1.269 24 C 0.066 3.934 25 O -0.308 6.308 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.413 0.587 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.010 0.990 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.074 0.926 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 3.847 -9.174 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.053 4.053 3 C -0.165 4.165 4 C 0.040 3.960 5 C -0.176 4.176 6 C -0.077 4.077 7 C -0.127 4.127 8 C -0.165 4.165 9 C -0.116 4.116 10 H 0.162 0.838 11 C 0.304 3.696 12 O -0.453 6.453 13 N -0.363 5.363 14 C 0.018 3.982 15 C -0.014 4.014 16 C -0.588 4.588 17 H 0.076 0.924 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.787 3.213 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.194 1.194 24 C -0.009 4.009 25 O -0.222 6.222 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.163 0.837 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.249 0.751 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.735 3.581 -8.767 24.629 hybrid contribution 1.594 -0.332 0.519 1.709 sum -21.141 3.250 -8.249 22.925 Atomic orbital electron populations 1.20938 0.87998 1.04189 1.03795 1.19838 0.97825 0.90803 0.96872 1.20362 0.89247 0.99751 1.07155 1.19739 0.92208 0.85798 0.98246 1.20379 0.93585 0.94509 1.09132 1.20301 0.93985 0.96438 0.96944 1.19982 0.92579 0.96774 1.03349 1.20825 1.00176 0.92289 1.03202 1.21585 0.93094 0.96217 1.00661 0.83772 1.20563 0.82105 0.83062 0.83845 1.90675 1.67284 1.38741 1.48582 1.46120 1.07594 1.42673 1.39876 1.21238 0.92979 0.93843 0.90187 1.19123 0.89254 0.96434 0.96566 1.21441 0.93684 1.22907 1.20718 0.92435 1.25844 0.98434 0.96547 0.98213 1.70041 1.08747 1.36498 1.41194 0.85530 0.77289 0.79130 0.79306 1.19391 1.20540 1.19402 1.23987 0.84771 0.90694 1.01403 1.86795 1.20336 1.32635 1.82480 0.89340 0.89737 0.90373 0.83697 0.86888 0.89928 0.92297 0.89356 0.75079 0.93617 0.93543 0.97150 0.97075 0.92497 0.90791 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.59 71.24 0.68 -0.68 16 2 C -0.05 -1.08 5.87 -19.92 -0.12 -1.20 16 3 C -0.15 -3.33 9.71 22.45 0.22 -3.11 16 4 C 0.08 2.28 7.04 22.68 0.16 2.44 16 5 C -0.17 -4.99 5.39 -19.52 -0.11 -5.10 16 6 C -0.06 -1.65 8.74 22.18 0.19 -1.46 16 7 C -0.13 -2.90 5.89 -19.83 -0.12 -3.02 16 8 C -0.11 -1.80 9.61 71.24 0.68 -1.11 16 9 C -0.09 -2.40 3.52 -11.40 -0.04 -2.44 16 10 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 11 C 0.52 17.18 7.06 87.66 0.62 17.80 16 12 O -0.57 -23.77 15.18 -3.04 -0.05 -23.81 16 13 N -0.71 -23.58 5.56 -463.07 -2.57 -26.15 16 14 C 0.14 5.94 5.61 86.38 0.48 6.43 16 15 C 0.02 1.17 5.09 29.85 0.15 1.32 16 16 C -0.55 -30.39 9.11 25.60 0.23 -30.16 16 17 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -53.68 13.29 21.45 0.28 -53.40 16 20 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 C 0.07 1.45 7.54 72.56 0.55 1.99 16 25 O -0.31 -7.87 11.10 -94.99 -1.05 -8.92 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 0.84 5.94 -2.39 -0.01 0.83 16 28 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 29 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.11 3.38 7.81 -2.91 -0.02 3.36 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 33 H 0.09 1.10 5.94 -2.39 -0.01 1.08 16 34 H 0.41 11.21 8.47 -92.70 -0.79 10.42 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.27 14.56 8.31 -92.71 -0.77 13.78 16 40 H 0.07 1.74 7.91 -2.39 -0.02 1.72 16 41 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -70.17 342.70 2.95 -67.21 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.25 Total: 17.09 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 4.06 Total: -17.36 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -2.29 Total: -79.54 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.10 Total: -32.74 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -70.17 2.95 -67.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274601863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.753 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds