Wall clock time and date at job start Tue Mar 31 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37984 * 119.82312 * 2 1 4 4 C 1.39239 * 120.23892 * 180.02562 * 3 2 1 5 5 C 1.38925 * 118.87509 * 0.28691 * 4 3 2 6 6 C 1.37696 * 120.79059 * 359.52603 * 5 4 3 7 7 C 1.38241 * 119.82637 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.11439 * 359.85752 * 7 2 1 9 9 C 1.51647 * 107.03348 * 179.48674 * 5 4 3 10 10 H 1.09000 * 110.93729 * 102.80822 * 9 5 4 11 11 C 1.50700 * 110.93802 * 226.45288 * 9 5 4 12 12 O 1.21283 * 120.00275 * 356.99213 * 11 9 5 13 13 N 1.34777 * 120.00075 * 176.99113 * 11 9 5 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47211 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.54701 * 101.96014 * 344.62833 * 9 5 4 25 25 O 1.36134 * 129.89516 * 180.95960 * 4 3 2 26 26 H 1.08998 * 109.47274 * 270.02502 * 1 2 3 27 27 H 1.08999 * 109.47215 * 30.02295 * 1 2 3 28 28 H 1.09002 * 109.46819 * 150.02384 * 1 2 3 29 29 H 1.07999 * 119.87723 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.01660 * 180.31464 * 6 5 4 31 31 H 1.09000 * 109.47209 * 269.97326 * 8 7 2 32 32 H 1.08994 * 109.47202 * 29.97849 * 8 7 2 33 33 H 1.09010 * 109.46983 * 149.97631 * 8 7 2 34 34 H 0.97000 * 120.00140 * 0.02562 * 13 11 9 35 35 H 1.09000 * 109.47602 * 60.00059 * 14 13 11 36 36 H 1.09007 * 109.47337 * 299.99774 * 14 13 11 37 37 H 1.09000 * 109.47211 * 59.99311 * 15 14 13 38 38 H 1.09007 * 109.46376 * 299.99853 * 15 14 13 39 39 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 40 40 H 1.09005 * 110.74801 * 143.59908 * 24 9 5 41 41 H 1.09000 * 110.75247 * 266.94572 * 24 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1971 0.0000 4 6 3.5856 1.2072 -0.0005 5 6 4.2653 -0.0044 -0.0072 6 6 3.5785 -1.1979 -0.0033 7 6 2.1946 -1.1993 0.0005 8 6 1.4397 -2.5036 0.0044 9 6 5.7471 0.3176 -0.0191 10 1 6.1838 0.1789 0.9699 11 6 6.4708 -0.5148 -1.0460 12 8 5.8662 -1.3489 -1.6860 13 7 7.7900 -0.3323 -1.2532 14 6 8.4934 -1.1410 -2.2518 15 6 9.9689 -0.7377 -2.2874 16 6 10.6924 -1.5692 -3.3151 17 1 10.1537 -2.3115 -3.8855 18 6 12.0431 -1.3867 -3.5227 19 7 12.6756 -2.1162 -4.4158 20 14 12.9748 -0.1032 -2.5358 21 1 13.5021 -0.7214 -1.2927 22 1 14.1040 0.4205 -3.3457 23 1 12.0590 1.0116 -2.1842 24 6 5.7472 1.8120 -0.4190 25 8 4.4511 2.2578 0.0169 26 1 -0.3634 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6483 2.1296 -0.0004 30 1 4.1196 -2.1325 -0.0034 31 1 1.2604 -2.8166 1.0329 32 1 0.4862 -2.3731 -0.5073 33 1 2.0268 -3.2647 -0.5099 34 1 8.2737 0.3346 -0.7411 35 1 8.0475 -0.9760 -3.2327 36 1 8.4117 -2.1956 -1.9883 37 1 10.4145 -0.9030 -1.3065 38 1 10.0509 0.3169 -2.5507 39 1 13.6258 -1.9875 -4.5621 40 1 6.5375 2.3514 0.1032 41 1 5.8507 1.9229 -1.4984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274601864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:43 Heat of formation + Delta-G solvation = -56.538739 kcal Electronic energy + Delta-G solvation = -22269.243834 eV Core-core repulsion = 18920.947648 eV Total energy + Delta-G solvation = -3348.296186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.53991 -39.10586 -38.25438 -35.11941 -33.38199 -32.88435 -32.12901 -31.37805 -29.90319 -27.15212 -26.50567 -25.25457 -23.34260 -22.41946 -20.95869 -20.73811 -19.93692 -17.46296 -17.26938 -16.95559 -16.53441 -15.62840 -15.41905 -15.10640 -14.59957 -14.44571 -14.22420 -14.20499 -13.89919 -13.63327 -13.13250 -13.01071 -12.91243 -12.64809 -12.48121 -12.21170 -12.18630 -12.03803 -11.54628 -11.45794 -11.25063 -10.88048 -10.69285 -10.45115 -10.32752 -10.01346 -9.60657 -9.35581 -8.82762 -8.70997 -8.61785 -8.08424 -6.14961 -4.15582 1.13800 1.30157 2.72106 3.04238 3.21840 3.29387 3.30524 3.32891 3.68397 4.08993 4.33766 4.36083 4.69102 4.73156 4.76290 4.86028 5.03035 5.08267 5.17088 5.17764 5.27308 5.32720 5.41845 5.47918 5.53448 5.63725 5.67004 5.84095 6.01657 6.05060 6.13179 6.16892 6.33083 6.47228 6.48889 6.56898 6.63437 7.05336 7.06497 7.16676 7.61528 7.76420 8.37087 8.43775 8.89105 9.44809 10.98069 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.003076 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.498363 B = 9100.514553 C = 9779.264032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.053 4.053 3 C -0.141 4.141 4 C 0.104 3.896 5 C -0.151 4.151 6 C -0.035 4.035 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.103 4.103 10 H 0.120 0.880 11 C 0.516 3.484 12 O -0.530 6.530 13 N -0.724 5.724 14 C 0.130 3.870 15 C -0.022 4.022 16 C -0.524 4.524 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.883 3.117 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.266 1.266 24 C 0.064 3.936 25 O -0.302 6.302 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.022 0.978 39 H 0.265 0.735 40 H 0.116 0.884 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.353 7.047 12.826 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.159 4.159 4 C 0.059 3.941 5 C -0.153 4.153 6 C -0.053 4.053 7 C -0.120 4.120 8 C -0.167 4.167 9 C -0.124 4.124 10 H 0.138 0.862 11 C 0.300 3.700 12 O -0.406 6.406 13 N -0.374 5.374 14 C 0.008 3.992 15 C -0.059 4.059 16 C -0.563 4.563 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.536 5.536 20 Si 0.710 3.290 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.191 1.191 24 C -0.011 4.011 25 O -0.216 6.216 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.229 0.771 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.134 0.866 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.620 6.623 12.301 25.741 hybrid contribution 1.304 0.873 0.631 1.692 sum -20.316 7.496 12.932 25.222 Atomic orbital electron populations 1.20855 0.90763 1.03069 1.02465 1.19412 0.95887 0.91598 0.98404 1.19974 0.89616 0.98456 1.07883 1.19469 0.91392 0.85924 0.97324 1.20147 0.92865 0.94031 1.08220 1.20213 0.92793 0.96988 0.95298 1.19619 0.93111 0.95053 1.04223 1.20768 0.99885 0.93932 1.02089 1.21582 0.93937 0.95936 1.00964 0.86195 1.19987 0.82437 0.83944 0.83630 1.90709 1.66603 1.34883 1.48432 1.46345 1.08567 1.40785 1.41736 1.21547 0.93353 0.94299 0.90030 1.19795 0.90681 0.97652 0.97809 1.20906 0.93956 1.20901 1.20496 0.90627 1.25006 0.97519 0.95790 0.94966 1.69903 1.09935 1.39998 1.33748 0.86746 0.79687 0.82334 0.80262 1.20213 1.21235 1.19083 1.23824 0.84380 0.91542 1.01379 1.86827 1.19698 1.32623 1.82418 0.90951 0.91496 0.90826 0.85545 0.85380 0.91418 0.91274 0.91455 0.77059 0.91837 0.91848 0.96408 0.95975 0.92500 0.86637 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.59 36.01 0.35 -0.49 16 2 C -0.05 -0.57 5.87 -104.71 -0.61 -1.18 16 3 C -0.14 -1.64 9.71 -39.30 -0.38 -2.02 16 4 C 0.10 1.38 7.04 -38.96 -0.27 1.11 16 5 C -0.15 -2.09 5.41 -104.10 -0.56 -2.65 16 6 C -0.03 -0.47 8.72 -39.72 -0.35 -0.82 16 7 C -0.12 -1.39 5.89 -104.56 -0.62 -2.00 16 8 C -0.11 -0.97 9.61 36.01 0.35 -0.62 16 9 C -0.10 -1.27 3.52 -91.56 -0.32 -1.59 16 10 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 11 C 0.52 8.11 7.07 -10.98 -0.08 8.04 16 12 O -0.53 -10.38 15.10 5.55 0.08 -10.30 16 13 N -0.72 -11.20 5.54 -60.29 -0.33 -11.54 16 14 C 0.13 2.56 5.61 -4.04 -0.02 2.54 16 15 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 16 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 20 Si 0.88 20.71 27.46 -169.99 -4.67 16.04 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -5.86 6.55 56.52 0.37 -5.49 16 24 C 0.06 0.69 7.54 38.05 0.29 0.98 16 25 O -0.30 -3.86 11.10 -20.17 -0.22 -4.08 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.07 0.47 5.94 -51.93 -0.31 0.16 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.13 1.77 7.73 -52.49 -0.41 1.36 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.50 5.94 -51.93 -0.31 0.19 16 33 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 34 H 0.40 4.91 8.47 -40.82 -0.35 4.56 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.38 7.56 -51.93 -0.39 -0.01 16 38 H 0.02 0.48 7.21 -51.93 -0.37 0.10 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.94 7.91 -51.93 -0.41 0.53 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -33.13 338.94 -7.98 -41.11 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.93 Total: 2.25 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.79 Total: -12.26 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.44 Total: -37.86 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.14 Total: -14.38 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.13 -7.98 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274601864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.427 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds