Wall clock time and date at job start Tue Mar 31 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37984 * 119.82312 * 2 1 4 4 C 1.39239 * 120.23892 * 180.02562 * 3 2 1 5 5 C 1.38925 * 118.87509 * 0.28691 * 4 3 2 6 6 C 1.37696 * 120.79059 * 359.52603 * 5 4 3 7 7 C 1.38241 * 119.82637 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.11439 * 359.85752 * 7 2 1 9 9 C 1.51647 * 107.03348 * 179.48674 * 5 4 3 10 10 H 1.09000 * 110.93729 * 102.80822 * 9 5 4 11 11 C 1.50700 * 110.93802 * 226.45288 * 9 5 4 12 12 O 1.21283 * 120.00275 * 356.99213 * 11 9 5 13 13 N 1.34777 * 120.00075 * 176.99113 * 11 9 5 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47211 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 15 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.54701 * 101.96014 * 344.62833 * 9 5 4 25 25 O 1.36134 * 129.89516 * 180.95960 * 4 3 2 26 26 H 1.08998 * 109.47274 * 270.02502 * 1 2 3 27 27 H 1.08999 * 109.47215 * 30.02295 * 1 2 3 28 28 H 1.09002 * 109.46819 * 150.02384 * 1 2 3 29 29 H 1.07999 * 119.87723 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.01660 * 180.31464 * 6 5 4 31 31 H 1.09000 * 109.47209 * 269.97326 * 8 7 2 32 32 H 1.08994 * 109.47202 * 29.97849 * 8 7 2 33 33 H 1.09010 * 109.46983 * 149.97631 * 8 7 2 34 34 H 0.97000 * 120.00140 * 0.02562 * 13 11 9 35 35 H 1.09000 * 109.47602 * 60.00059 * 14 13 11 36 36 H 1.09007 * 109.47337 * 299.99774 * 14 13 11 37 37 H 1.09000 * 109.47211 * 59.99311 * 15 14 13 38 38 H 1.09007 * 109.46376 * 299.99853 * 15 14 13 39 39 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 40 40 H 1.09005 * 110.74801 * 143.59908 * 24 9 5 41 41 H 1.09000 * 110.75247 * 266.94572 * 24 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1971 0.0000 4 6 3.5856 1.2072 -0.0005 5 6 4.2653 -0.0044 -0.0072 6 6 3.5785 -1.1979 -0.0033 7 6 2.1946 -1.1993 0.0005 8 6 1.4397 -2.5036 0.0044 9 6 5.7471 0.3176 -0.0191 10 1 6.1838 0.1789 0.9699 11 6 6.4708 -0.5148 -1.0460 12 8 5.8662 -1.3489 -1.6860 13 7 7.7900 -0.3323 -1.2532 14 6 8.4934 -1.1410 -2.2518 15 6 9.9689 -0.7377 -2.2874 16 6 10.6924 -1.5692 -3.3151 17 1 10.1537 -2.3115 -3.8855 18 6 12.0431 -1.3867 -3.5227 19 7 12.6756 -2.1162 -4.4158 20 14 12.9748 -0.1032 -2.5358 21 1 13.5021 -0.7214 -1.2927 22 1 14.1040 0.4205 -3.3457 23 1 12.0590 1.0116 -2.1842 24 6 5.7472 1.8120 -0.4190 25 8 4.4511 2.2578 0.0169 26 1 -0.3634 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6483 2.1296 -0.0004 30 1 4.1196 -2.1325 -0.0034 31 1 1.2604 -2.8166 1.0329 32 1 0.4862 -2.3731 -0.5073 33 1 2.0268 -3.2647 -0.5099 34 1 8.2737 0.3346 -0.7411 35 1 8.0475 -0.9760 -3.2327 36 1 8.4117 -2.1956 -1.9883 37 1 10.4145 -0.9030 -1.3065 38 1 10.0509 0.3169 -2.5507 39 1 13.6258 -1.9875 -4.5621 40 1 6.5375 2.3514 0.1032 41 1 5.8507 1.9229 -1.4984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274601864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:41 Heat of formation + Delta-G solvation = -78.688536 kcal Electronic energy + Delta-G solvation = -22270.204321 eV Core-core repulsion = 18920.947648 eV Total energy + Delta-G solvation = -3349.256673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.49441 -40.37519 -39.12599 -36.71180 -34.84891 -34.30630 -32.99017 -32.54910 -31.39954 -27.98902 -27.28851 -26.94413 -24.50492 -23.34290 -22.64672 -21.77372 -21.13415 -19.03192 -18.53521 -18.16663 -17.48426 -16.80268 -16.57057 -16.49025 -16.18076 -15.68510 -15.32292 -15.12598 -14.95849 -14.75807 -14.61752 -14.37446 -13.90202 -13.55868 -13.36708 -13.29049 -13.18005 -12.99120 -12.94554 -12.80885 -12.22665 -12.17770 -12.15002 -11.77056 -11.73328 -11.55741 -11.52035 -10.94114 -10.79741 -10.12694 -9.72220 -8.98058 -8.30918 -6.38677 0.23703 0.37253 1.39104 1.41914 1.48082 1.53031 2.06944 2.21736 2.36394 2.70875 3.04352 3.13509 3.46688 3.74669 3.86083 3.96338 4.00624 4.27039 4.28527 4.32720 4.37498 4.40064 4.52989 4.57083 4.72775 4.73036 4.75354 4.79547 4.93806 5.03054 5.10614 5.13528 5.23818 5.31463 5.38304 5.39554 5.42192 5.61742 5.63576 5.72565 6.16876 6.20614 6.52382 6.69692 7.18012 7.26140 8.85993 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.003076 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.498363 B = 9100.514553 C = 9779.264032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.053 4.053 3 C -0.148 4.148 4 C 0.086 3.914 5 C -0.176 4.176 6 C -0.058 4.058 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.093 4.093 10 H 0.148 0.852 11 C 0.518 3.482 12 O -0.574 6.574 13 N -0.710 5.710 14 C 0.145 3.855 15 C -0.012 4.012 16 C -0.541 4.541 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.952 5.952 20 Si 0.960 3.040 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.233 1.233 24 C 0.065 3.935 25 O -0.308 6.308 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.416 0.584 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.268 0.732 40 H 0.157 0.843 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.301 9.654 15.272 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.166 4.166 4 C 0.041 3.959 5 C -0.178 4.178 6 C -0.077 4.077 7 C -0.128 4.128 8 C -0.165 4.165 9 C -0.114 4.114 10 H 0.166 0.834 11 C 0.304 3.696 12 O -0.453 6.453 13 N -0.362 5.362 14 C 0.021 3.979 15 C -0.050 4.050 16 C -0.579 4.579 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.592 5.592 20 Si 0.782 3.218 21 H -0.190 1.190 22 H -0.214 1.214 23 H -0.156 1.156 24 C -0.010 4.010 25 O -0.222 6.222 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.163 0.837 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.174 0.826 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.589 9.257 14.779 28.537 hybrid contribution 1.497 -0.049 -0.205 1.512 sum -21.092 9.208 14.574 27.241 Atomic orbital electron populations 1.20940 0.88080 1.04158 1.03784 1.19834 0.97794 0.90841 0.96873 1.20356 0.89346 0.99688 1.07216 1.19716 0.92168 0.85835 0.98145 1.20388 0.93781 0.94403 1.09179 1.20312 0.93938 0.96543 0.96881 1.19982 0.92659 0.96728 1.03447 1.20825 1.00170 0.92358 1.03182 1.21596 0.92884 0.96209 1.00757 0.83429 1.20600 0.82079 0.83435 0.83505 1.90695 1.67511 1.36910 1.50224 1.46033 1.08615 1.40634 1.40943 1.21042 0.92592 0.93936 0.90305 1.19653 0.91192 0.97326 0.96822 1.21264 0.94547 1.20719 1.21375 0.95496 1.26114 0.98638 0.98472 0.96204 1.70083 1.10499 1.42482 1.36125 0.85523 0.78179 0.79704 0.78372 1.18998 1.21424 1.15598 1.24043 0.84753 0.90599 1.01562 1.86812 1.20273 1.32598 1.82558 0.89343 0.90371 0.89813 0.83714 0.86922 0.89928 0.89413 0.92377 0.74682 0.93890 0.93818 0.94430 0.94219 0.92333 0.82563 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.59 71.24 0.68 -0.65 16 2 C -0.05 -1.06 5.87 -19.92 -0.12 -1.17 16 3 C -0.15 -3.23 9.71 22.45 0.22 -3.01 16 4 C 0.09 2.21 7.04 22.68 0.16 2.37 16 5 C -0.18 -4.80 5.41 -19.53 -0.11 -4.91 16 6 C -0.06 -1.61 8.72 22.18 0.19 -1.42 16 7 C -0.13 -2.89 5.89 -19.83 -0.12 -3.00 16 8 C -0.11 -1.80 9.61 71.24 0.68 -1.11 16 9 C -0.09 -2.16 3.52 -11.40 -0.04 -2.20 16 10 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 11 C 0.52 16.03 7.07 87.66 0.62 16.65 16 12 O -0.57 -23.22 15.10 -3.04 -0.05 -23.26 16 13 N -0.71 -20.95 5.54 -463.04 -2.57 -23.52 16 14 C 0.15 5.76 5.61 86.38 0.48 6.24 16 15 C -0.01 -0.53 4.16 29.85 0.12 -0.40 16 16 C -0.54 -30.56 9.66 25.60 0.25 -30.31 16 17 H 0.03 1.72 7.99 -2.91 -0.02 1.69 16 18 C 0.00 0.15 5.47 84.65 0.46 0.62 16 19 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 20 Si 0.96 41.54 27.46 68.60 1.88 43.42 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.23 -8.80 6.55 99.48 0.65 -8.14 16 24 C 0.07 1.25 7.54 72.56 0.55 1.79 16 25 O -0.31 -7.29 11.10 -95.07 -1.06 -8.35 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 28 H 0.08 0.83 5.94 -2.39 -0.01 0.81 16 29 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.11 3.32 7.73 -2.91 -0.02 3.30 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.09 5.94 -2.39 -0.01 1.08 16 33 H 0.06 1.06 8.09 -2.38 -0.02 1.04 16 34 H 0.42 8.94 8.47 -92.71 -0.79 8.16 16 35 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.04 1.49 7.56 -2.39 -0.02 1.47 16 38 H 0.04 1.59 7.21 -2.38 -0.02 1.57 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.16 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.07 1.56 7.91 -2.39 -0.02 1.54 16 Total: -1.00 -75.72 338.94 2.76 -72.96 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.20 Total: 18.16 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 4.04 Total: -20.52 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -2.27 Total: -82.39 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.10 Total: -31.61 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Total: -75.72 2.76 -72.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274601864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.730 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds