Wall clock time and date at job start Tue Mar 31 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.94160 * 2 1 4 4 C 1.38141 * 120.05101 * 180.25047 * 3 2 1 5 5 C 1.38737 * 119.94603 * 359.47226 * 4 3 2 6 6 O 1.35899 * 120.05612 * 180.29927 * 5 4 3 7 7 C 1.42895 * 117.00234 * 5.60384 * 6 5 4 8 8 C 1.53048 * 109.46145 * 276.19946 * 7 6 5 9 9 C 1.53181 * 109.31666 * 178.61443 * 8 7 6 10 10 N 1.46932 * 108.77586 * 54.63202 * 9 8 7 11 11 C 1.34769 * 120.62777 * 126.37219 * 10 9 8 12 12 O 1.21691 * 120.00226 * 185.05993 * 11 10 9 13 13 C 1.46379 * 120.00469 * 5.06254 * 11 10 9 14 14 H 1.08002 * 119.99476 * 343.46057 * 13 11 10 15 15 C 1.40049 * 120.00326 * 163.45998 * 13 11 10 16 16 N 1.30669 * 120.00076 * 168.86408 * 15 13 11 17 17 Si 1.86801 * 120.00008 * 348.86279 * 15 13 11 18 18 H 1.48500 * 109.47071 * 87.35533 * 17 15 13 19 19 H 1.48498 * 109.47136 * 207.35551 * 17 15 13 20 20 H 1.48496 * 109.47055 * 327.35790 * 17 15 13 21 21 C 1.46921 * 118.73973 * 306.39441 * 10 9 8 22 22 C 1.53032 * 109.46294 * 156.13378 * 7 6 5 23 23 C 1.38732 * 119.88749 * 0.26867 * 5 4 3 24 24 C 1.38149 * 119.94293 * 0.02562 * 23 5 4 25 25 H 1.08999 * 109.47675 * 270.25701 * 1 2 3 26 26 H 1.09005 * 109.47059 * 30.26039 * 1 2 3 27 27 H 1.09003 * 109.47250 * 150.25359 * 1 2 3 28 28 H 1.07997 * 119.97574 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.02972 * 179.74070 * 4 3 2 30 30 H 1.09001 * 109.45832 * 36.15643 * 7 6 5 31 31 H 1.09002 * 109.49366 * 298.56835 * 8 7 6 32 32 H 1.09007 * 109.49531 * 58.65641 * 8 7 6 33 33 H 1.09004 * 109.58633 * 294.84518 * 9 8 7 34 34 H 1.08995 * 109.70799 * 174.49066 * 9 8 7 35 35 H 0.96994 * 120.00256 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.58712 * 293.82076 * 21 10 9 37 37 H 1.08997 * 109.70198 * 173.46650 * 21 10 9 38 38 H 1.09003 * 109.49638 * 301.33311 * 22 7 6 39 39 H 1.08997 * 109.49993 * 61.43208 * 22 7 6 40 40 H 1.07999 * 120.03204 * 180.02562 * 23 5 4 41 41 H 1.07997 * 119.97220 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2008 -0.0052 5 6 4.2734 0.0000 0.0006 6 8 5.6324 0.0000 0.0016 7 6 6.2811 1.2677 0.1208 8 6 6.3748 1.9242 -1.2585 9 6 7.0393 3.2976 -1.1218 10 7 8.3320 3.1320 -0.4432 11 6 9.4638 3.6121 -0.9954 12 8 10.5389 3.3891 -0.4708 13 6 9.3999 4.4017 -2.2264 14 1 8.5084 4.3808 -2.8356 15 6 10.4949 5.1841 -2.6140 16 7 10.5294 5.7136 -3.8081 17 14 11.9059 5.4710 -1.4240 18 1 12.8931 4.3690 -1.5519 19 1 12.5641 6.7643 -1.7391 20 1 11.3822 5.5075 -0.0349 21 6 8.3674 2.4329 0.8484 22 6 7.6878 1.0691 0.6896 23 6 3.5786 -1.2008 0.0060 24 6 2.1971 -1.1981 0.0051 25 1 -0.3634 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8923 -0.5099 28 1 1.6558 2.1327 0.0004 29 1 4.1172 2.1368 -0.0095 30 1 5.7060 1.9083 0.7894 31 1 6.9705 1.2960 -1.9207 32 1 5.3738 2.0440 -1.6731 33 1 6.3998 3.9562 -0.5341 34 1 7.1981 3.7291 -2.1101 35 1 11.2875 6.2559 -4.0765 36 1 7.8361 3.0208 1.5969 37 1 9.4018 2.2915 1.1616 38 1 7.6215 0.5803 1.6617 39 1 8.2712 0.4490 0.0091 40 1 4.1171 -2.1369 0.0110 41 1 1.6557 -2.1325 0.0089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274732897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:39 Heat of formation + Delta-G solvation = -63.999034 kcal Electronic energy + Delta-G solvation = -22711.134407 eV Core-core repulsion = 19362.514719 eV Total energy + Delta-G solvation = -3348.619688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.48389 -38.86326 -37.69270 -35.66915 -32.88766 -32.35724 -31.35123 -31.13623 -30.55851 -26.97594 -26.36368 -24.44527 -23.09663 -22.57923 -21.42741 -20.58726 -19.03520 -18.22177 -16.93575 -16.30639 -15.77855 -15.45099 -15.07252 -14.97134 -14.58503 -14.29264 -14.10410 -13.86244 -13.72851 -13.60218 -13.04252 -12.94091 -12.46145 -12.37339 -12.11039 -12.05016 -11.78762 -11.67921 -11.53661 -11.36897 -11.07027 -10.82006 -10.74114 -10.50093 -10.38057 -10.17519 -9.46681 -9.10949 -9.04806 -8.08392 -7.96547 -7.65735 -6.66054 -4.86851 1.22919 1.32406 3.18606 3.41411 3.46156 3.64162 3.67639 4.12509 4.15847 4.50124 4.66181 4.72316 4.79023 4.85770 4.90655 5.11767 5.13801 5.23423 5.30160 5.38224 5.39729 5.43226 5.58721 5.61380 5.67381 5.74071 5.88719 5.92206 5.96621 6.01400 6.19614 6.25055 6.29006 6.32000 6.34978 6.47795 6.54602 6.71855 7.02318 7.46470 7.56250 7.83449 8.26009 8.66897 9.08171 9.98508 10.34999 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034943 B = 0.003321 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.112768 B = 8429.735164 C = 8882.598208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.134 4.134 3 C -0.080 4.080 4 C -0.206 4.206 5 C 0.134 3.866 6 O -0.311 6.311 7 C 0.090 3.910 8 C -0.160 4.160 9 C 0.124 3.876 10 N -0.634 5.634 11 C 0.556 3.444 12 O -0.616 6.616 13 C -0.535 4.535 14 H 0.091 0.909 15 C 0.104 3.896 16 N -0.827 5.827 17 Si 0.962 3.038 18 H -0.277 1.277 19 H -0.319 1.319 20 H -0.266 1.266 21 C 0.122 3.878 22 C -0.126 4.126 23 C -0.155 4.155 24 C -0.083 4.083 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.282 0.718 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.037 -9.570 7.510 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.098 4.098 4 C -0.225 4.225 5 C 0.088 3.912 6 O -0.225 6.225 7 C 0.034 3.966 8 C -0.199 4.199 9 C 0.000 4.000 10 N -0.369 5.369 11 C 0.365 3.635 12 O -0.507 6.507 13 C -0.571 4.571 14 H 0.109 0.891 15 C -0.114 4.114 16 N -0.456 5.456 17 Si 0.794 3.206 18 H -0.203 1.203 19 H -0.250 1.250 20 H -0.191 1.191 21 C -0.002 4.002 22 C -0.165 4.165 23 C -0.173 4.173 24 C -0.101 4.101 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.303 -9.736 7.584 21.253 hybrid contribution 0.384 0.298 0.296 0.569 sum -16.920 -9.438 7.880 20.915 Atomic orbital electron populations 1.20696 0.91284 1.02495 1.01939 1.19795 0.96076 0.93118 1.04450 1.20838 0.93341 0.97622 0.97965 1.21393 0.95281 0.97623 1.08154 1.19070 0.82935 0.93985 0.95199 1.86128 1.15746 1.33290 1.87338 1.22530 0.93695 0.82819 0.97521 1.22576 1.01728 0.98792 0.96783 1.21448 0.84629 0.93912 1.00006 1.47781 1.07427 1.60782 1.20862 1.18330 0.81244 0.79127 0.84776 1.90234 1.28300 1.64067 1.68128 1.20766 1.03155 1.27878 1.05271 0.89104 1.25733 0.98717 0.91888 0.95103 1.69562 1.31092 1.26783 1.18188 0.85312 0.79565 0.74580 0.81151 1.20272 1.24958 1.19081 1.21214 1.01917 0.90125 0.86952 1.22024 0.93398 0.99552 1.01513 1.20441 0.93754 0.96392 1.06742 1.20803 0.92990 0.97632 0.98643 0.91637 0.91795 0.91839 0.85944 0.84988 0.91097 0.90372 0.90922 0.93215 0.87731 0.90759 0.93111 0.88685 0.90807 0.90511 0.85383 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.13 -1.32 5.88 -104.60 -0.62 -1.93 16 3 C -0.08 -0.84 9.69 -39.61 -0.38 -1.22 16 4 C -0.21 -2.46 8.18 -39.43 -0.32 -2.79 16 5 C 0.13 1.76 6.58 -39.21 -0.26 1.50 16 6 O -0.31 -4.53 9.80 -19.42 -0.19 -4.72 16 7 C 0.09 1.27 2.08 -26.69 -0.06 1.22 16 8 C -0.16 -2.41 5.30 -26.61 -0.14 -2.55 16 9 C 0.12 2.16 6.32 -3.71 -0.02 2.14 16 10 N -0.63 -13.32 2.97 -174.43 -0.52 -13.84 16 11 C 0.56 14.58 7.22 -12.99 -0.09 14.49 16 12 O -0.62 -17.66 12.08 5.20 0.06 -17.59 16 13 C -0.54 -14.82 9.35 -35.63 -0.33 -15.16 16 14 H 0.09 2.48 5.97 -52.49 -0.31 2.17 16 15 C 0.10 2.93 5.52 -17.37 -0.10 2.83 16 16 N -0.83 -23.26 13.92 55.55 0.77 -22.49 16 17 Si 0.96 25.13 25.90 -169.99 -4.40 20.73 16 18 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.32 -7.86 7.11 56.52 0.40 -7.46 16 20 H -0.27 -7.22 6.74 56.52 0.38 -6.84 16 21 C 0.12 2.15 6.44 -3.71 -0.02 2.12 16 22 C -0.13 -1.89 5.73 -26.61 -0.15 -2.04 16 23 C -0.15 -1.80 9.99 -39.43 -0.39 -2.19 16 24 C -0.08 -0.82 9.69 -39.61 -0.38 -1.21 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.13 1.51 5.39 -52.49 -0.28 1.22 16 30 H 0.07 0.92 6.39 -51.93 -0.33 0.59 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 0.97 6.79 -51.92 -0.35 0.62 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 2.00 5.39 -51.93 -0.28 1.72 16 35 H 0.28 7.31 8.29 -40.82 -0.34 6.97 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -31.79 328.03 -7.97 -39.77 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.72 Total: -1.62 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.92 Total: -5.19 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.25 Total: -36.33 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.13 Total: -22.31 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.40 Total: 20.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.79 -7.97 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274732897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.232 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds