Wall clock time and date at job start Tue Mar 31 2020 06:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.94160 * 2 1 4 4 C 1.38141 * 120.05101 * 180.25047 * 3 2 1 5 5 C 1.38737 * 119.94603 * 359.47226 * 4 3 2 6 6 O 1.35899 * 120.05612 * 180.29927 * 5 4 3 7 7 C 1.42895 * 117.00234 * 5.60384 * 6 5 4 8 8 C 1.53048 * 109.46145 * 276.19946 * 7 6 5 9 9 C 1.53181 * 109.31666 * 178.61443 * 8 7 6 10 10 N 1.46932 * 108.77586 * 54.63202 * 9 8 7 11 11 C 1.34769 * 120.62777 * 126.37219 * 10 9 8 12 12 O 1.21691 * 120.00226 * 185.05993 * 11 10 9 13 13 C 1.46379 * 120.00469 * 5.06254 * 11 10 9 14 14 H 1.08002 * 119.99476 * 343.46057 * 13 11 10 15 15 C 1.40049 * 120.00326 * 163.45998 * 13 11 10 16 16 N 1.30669 * 120.00076 * 168.86408 * 15 13 11 17 17 Si 1.86801 * 120.00008 * 348.86279 * 15 13 11 18 18 H 1.48500 * 109.47071 * 87.35533 * 17 15 13 19 19 H 1.48498 * 109.47136 * 207.35551 * 17 15 13 20 20 H 1.48496 * 109.47055 * 327.35790 * 17 15 13 21 21 C 1.46921 * 118.73973 * 306.39441 * 10 9 8 22 22 C 1.53032 * 109.46294 * 156.13378 * 7 6 5 23 23 C 1.38732 * 119.88749 * 0.26867 * 5 4 3 24 24 C 1.38149 * 119.94293 * 0.02562 * 23 5 4 25 25 H 1.08999 * 109.47675 * 270.25701 * 1 2 3 26 26 H 1.09005 * 109.47059 * 30.26039 * 1 2 3 27 27 H 1.09003 * 109.47250 * 150.25359 * 1 2 3 28 28 H 1.07997 * 119.97574 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.02972 * 179.74070 * 4 3 2 30 30 H 1.09001 * 109.45832 * 36.15643 * 7 6 5 31 31 H 1.09002 * 109.49366 * 298.56835 * 8 7 6 32 32 H 1.09007 * 109.49531 * 58.65641 * 8 7 6 33 33 H 1.09004 * 109.58633 * 294.84518 * 9 8 7 34 34 H 1.08995 * 109.70799 * 174.49066 * 9 8 7 35 35 H 0.96994 * 120.00256 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.58712 * 293.82076 * 21 10 9 37 37 H 1.08997 * 109.70198 * 173.46650 * 21 10 9 38 38 H 1.09003 * 109.49638 * 301.33311 * 22 7 6 39 39 H 1.08997 * 109.49993 * 61.43208 * 22 7 6 40 40 H 1.07999 * 120.03204 * 180.02562 * 23 5 4 41 41 H 1.07997 * 119.97220 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2008 -0.0052 5 6 4.2734 0.0000 0.0006 6 8 5.6324 0.0000 0.0016 7 6 6.2811 1.2677 0.1208 8 6 6.3748 1.9242 -1.2585 9 6 7.0393 3.2976 -1.1218 10 7 8.3320 3.1320 -0.4432 11 6 9.4638 3.6121 -0.9954 12 8 10.5389 3.3891 -0.4708 13 6 9.3999 4.4017 -2.2264 14 1 8.5084 4.3808 -2.8356 15 6 10.4949 5.1841 -2.6140 16 7 10.5294 5.7136 -3.8081 17 14 11.9059 5.4710 -1.4240 18 1 12.8931 4.3690 -1.5519 19 1 12.5641 6.7643 -1.7391 20 1 11.3822 5.5075 -0.0349 21 6 8.3674 2.4329 0.8484 22 6 7.6878 1.0691 0.6896 23 6 3.5786 -1.2008 0.0060 24 6 2.1971 -1.1981 0.0051 25 1 -0.3634 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8923 -0.5099 28 1 1.6558 2.1327 0.0004 29 1 4.1172 2.1368 -0.0095 30 1 5.7060 1.9083 0.7894 31 1 6.9705 1.2960 -1.9207 32 1 5.3738 2.0440 -1.6731 33 1 6.3998 3.9562 -0.5341 34 1 7.1981 3.7291 -2.1101 35 1 11.2875 6.2559 -4.0765 36 1 7.8361 3.0208 1.5969 37 1 9.4018 2.2915 1.1616 38 1 7.6215 0.5803 1.6617 39 1 8.2712 0.4490 0.0091 40 1 4.1171 -2.1369 0.0110 41 1 1.6557 -2.1325 0.0089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274732897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:37 Heat of formation + Delta-G solvation = -82.862311 kcal Electronic energy + Delta-G solvation = -22711.952380 eV Core-core repulsion = 19362.514719 eV Total energy + Delta-G solvation = -3349.437662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.52414 -40.33978 -38.90621 -37.25291 -35.02439 -33.45694 -32.37585 -32.35152 -31.67454 -28.83270 -27.30000 -25.75570 -24.38532 -23.64551 -22.52402 -21.83597 -20.62532 -19.20814 -18.79530 -18.05526 -17.12137 -16.67031 -16.28357 -16.21622 -15.89914 -15.75243 -15.44044 -14.93649 -14.68649 -14.50769 -14.42991 -14.24456 -14.13369 -13.83948 -13.68671 -13.32123 -13.08677 -12.94011 -12.67045 -12.56790 -12.39270 -12.37034 -12.21112 -11.78787 -11.67712 -11.52181 -11.23494 -11.18850 -10.03124 -9.91940 -9.39043 -8.94763 -8.80973 -7.01567 0.42023 0.49184 1.30765 1.35398 1.56781 2.03014 2.19476 2.30754 2.61630 2.82484 3.28357 3.60660 3.68643 3.92751 3.93661 4.01947 4.05799 4.12214 4.28631 4.31187 4.38982 4.49123 4.53741 4.67579 4.72234 4.80765 4.83427 4.86845 4.88021 4.91729 5.03730 5.13352 5.16198 5.19802 5.25554 5.42526 5.46847 5.66583 5.72518 5.92908 5.96912 6.20205 6.50333 6.60157 7.09072 7.95077 8.24747 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034943 B = 0.003321 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.112768 B = 8429.735164 C = 8882.598208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.134 4.134 3 C -0.088 4.088 4 C -0.214 4.214 5 C 0.105 3.895 6 O -0.325 6.325 7 C 0.098 3.902 8 C -0.149 4.149 9 C 0.122 3.878 10 N -0.634 5.634 11 C 0.552 3.448 12 O -0.646 6.646 13 C -0.554 4.554 14 H 0.087 0.913 15 C 0.071 3.929 16 N -0.848 5.848 17 Si 1.006 2.994 18 H -0.293 1.293 19 H -0.294 1.294 20 H -0.284 1.284 21 C 0.119 3.881 22 C -0.118 4.118 23 C -0.166 4.166 24 C -0.085 4.085 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.292 0.708 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.132 0.868 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.596 -9.949 8.657 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C -0.106 4.106 4 C -0.233 4.233 5 C 0.060 3.940 6 O -0.239 6.239 7 C 0.042 3.958 8 C -0.187 4.187 9 C -0.001 4.001 10 N -0.367 5.367 11 C 0.359 3.641 12 O -0.540 6.540 13 C -0.590 4.590 14 H 0.104 0.896 15 C -0.144 4.144 16 N -0.479 5.479 17 Si 0.837 3.163 18 H -0.220 1.220 19 H -0.223 1.223 20 H -0.210 1.210 21 C -0.004 4.004 22 C -0.156 4.156 23 C -0.185 4.185 24 C -0.103 4.103 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.160 0.840 29 H 0.153 0.847 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.150 0.850 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.911 -10.114 8.725 23.976 hybrid contribution 1.011 0.325 -0.040 1.063 sum -18.900 -9.789 8.684 22.988 Atomic orbital electron populations 1.20757 0.89185 1.03509 1.02897 1.20206 0.97695 0.92796 1.02765 1.21149 0.92978 0.98901 0.97547 1.21504 0.96044 0.97292 1.08424 1.19328 0.82328 0.95088 0.97260 1.86091 1.16869 1.32983 1.87998 1.22365 0.93367 0.83285 0.96815 1.22436 1.01937 0.96891 0.97459 1.21588 0.83504 0.95864 0.99137 1.47747 1.07260 1.59817 1.21880 1.18255 0.82188 0.79109 0.84506 1.90205 1.29859 1.65222 1.68725 1.21008 1.03193 1.28471 1.06336 0.89563 1.26225 1.00108 0.92160 0.95954 1.69564 1.32121 1.27600 1.18629 0.84703 0.77732 0.74865 0.78961 1.22011 1.22342 1.21034 1.21404 1.01564 0.91688 0.85709 1.21889 0.93540 0.97613 1.02569 1.20676 0.94670 0.96257 1.06892 1.21137 0.92435 0.98975 0.97736 0.90590 0.91006 0.90708 0.84012 0.84661 0.89149 0.92708 0.88930 0.90230 0.89878 0.89765 0.90133 0.90854 0.88180 0.92601 0.85001 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.42 16 2 C -0.13 -2.25 5.88 -19.85 -0.12 -2.36 16 3 C -0.09 -1.61 9.69 22.25 0.22 -1.39 16 4 C -0.21 -4.66 8.18 22.37 0.18 -4.47 16 5 C 0.10 2.60 6.58 22.51 0.15 2.74 16 6 O -0.32 -9.05 9.80 -92.41 -0.91 -9.95 16 7 C 0.10 2.59 2.08 30.62 0.06 2.65 16 8 C -0.15 -4.34 5.30 30.67 0.16 -4.17 16 9 C 0.12 4.15 6.32 86.36 0.55 4.69 16 10 N -0.63 -26.48 2.97 -824.01 -2.45 -28.93 16 11 C 0.55 29.37 7.22 86.36 0.62 30.00 16 12 O -0.65 -37.70 12.08 -4.32 -0.05 -37.75 16 13 C -0.55 -31.25 9.35 24.83 0.23 -31.02 16 14 H 0.09 4.83 5.97 -2.91 -0.02 4.81 16 15 C 0.07 4.07 5.52 85.31 0.47 4.54 16 16 N -0.85 -47.98 13.92 21.84 0.30 -47.68 16 17 Si 1.01 52.23 25.90 68.60 1.78 54.01 16 18 H -0.29 -15.85 7.11 99.48 0.71 -15.14 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.28 -15.48 6.74 99.48 0.67 -14.81 16 21 C 0.12 4.07 6.44 86.36 0.56 4.63 16 22 C -0.12 -3.38 5.73 30.67 0.18 -3.20 16 23 C -0.17 -3.61 9.99 22.37 0.22 -3.39 16 24 C -0.09 -1.48 9.69 22.25 0.22 -1.26 16 25 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.67 8.09 -2.38 -0.02 0.65 16 27 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 28 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.14 2.74 5.39 -2.91 -0.02 2.72 16 30 H 0.09 2.07 6.39 -2.39 -0.02 2.06 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.09 2.34 6.79 -2.38 -0.02 2.32 16 33 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.08 3.21 5.39 -2.39 -0.01 3.20 16 35 H 0.29 15.06 8.29 -92.71 -0.77 14.29 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.85 7.00 -2.39 -0.02 2.83 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -68.96 328.03 4.08 -64.88 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.00 Total: 7.87 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 4.41 Total: -2.45 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.14 Total: -76.60 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.96 Total: -47.70 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 1.78 Total: 54.01 kcal Total: -68.96 4.08 -64.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274732897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.985 kcal (2) G-P(sol) polarization free energy of solvation -68.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds