Wall clock time and date at job start Tue Mar 31 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 112.90486 * 2 1 4 4 C 1.53787 * 113.61366 * 131.24483 * 2 1 3 5 5 H 1.09001 * 113.61012 * 334.57369 * 4 2 1 6 6 O 1.42903 * 113.61556 * 203.66944 * 4 2 1 7 7 C 1.53778 * 87.07787 * 89.12074 * 4 2 1 8 8 C 1.53779 * 87.17591 * 25.39066 * 7 4 2 9 9 H 1.09004 * 113.61523 * 89.15469 * 8 7 4 10 10 N 1.46499 * 113.61987 * 220.06308 * 8 7 4 11 11 C 1.34780 * 120.00006 * 255.49933 * 10 8 7 12 12 O 1.21588 * 119.99493 * 359.97438 * 11 10 8 13 13 C 1.47636 * 120.00266 * 179.97438 * 11 10 8 14 14 C 1.40018 * 119.89308 * 359.72316 * 13 11 10 15 15 C 1.36311 * 120.10529 * 179.72155 * 14 13 11 16 16 C 1.40892 * 119.89133 * 0.55404 * 15 14 13 17 17 C 1.41111 * 120.10434 * 179.74780 * 16 15 14 18 18 H 1.07996 * 120.00170 * 150.12750 * 17 16 15 19 19 C 1.40231 * 119.99679 * 330.12105 * 17 16 15 20 20 N 1.30646 * 119.99441 * 161.75485 * 19 17 16 21 21 Si 1.86804 * 120.00165 * 341.76135 * 19 17 16 22 22 H 1.48500 * 109.47243 * 95.40721 * 21 19 17 23 23 H 1.48496 * 109.46814 * 215.40985 * 21 19 17 24 24 H 1.48497 * 109.46705 * 335.40777 * 21 19 17 25 25 C 1.40886 * 119.79501 * 359.71577 * 16 15 14 26 26 C 1.36316 * 119.89047 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47703 * 308.25619 * 1 2 3 28 28 H 1.09006 * 109.46451 * 68.25859 * 1 2 3 29 29 H 1.09005 * 109.47027 * 188.25362 * 1 2 3 30 30 H 1.09000 * 109.46449 * 171.74138 * 3 2 1 31 31 H 1.08997 * 109.47054 * 291.74068 * 3 2 1 32 32 H 1.08998 * 109.47208 * 51.74398 * 3 2 1 33 33 H 0.96692 * 113.99495 * 182.99862 * 6 4 2 34 34 H 1.09002 * 113.61380 * 139.98001 * 7 4 2 35 35 H 1.09004 * 113.61697 * 270.80163 * 7 4 2 36 36 H 0.96998 * 120.00139 * 75.49047 * 10 8 7 37 37 H 1.08000 * 119.94744 * 359.97438 * 14 13 11 38 38 H 1.07997 * 120.05766 * 180.27477 * 15 14 13 39 39 H 0.97006 * 119.99241 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.05874 * 180.02562 * 25 16 15 41 41 H 1.08000 * 119.94752 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9290 1.0595 5 1 1.4944 -1.1085 1.9146 6 8 3.4741 -0.5629 1.4393 7 6 2.0930 -2.0425 0.0002 8 6 2.1449 -0.9307 -1.0610 9 1 3.1577 -0.6519 -1.3522 10 7 1.2680 -1.1738 -2.2091 11 6 1.7919 -1.5759 -3.3840 12 8 2.9924 -1.7364 -3.4911 13 6 0.9082 -1.8214 -4.5409 14 6 -0.4745 -1.6415 -4.4135 15 6 -1.2939 -1.8615 -5.4804 16 6 -0.7485 -2.2818 -6.7096 17 6 -1.5931 -2.5160 -7.8155 18 1 -1.2241 -2.3628 -8.8188 19 6 -2.9116 -2.9479 -7.6116 20 7 -3.7937 -2.8269 -8.5677 21 14 -3.4067 -3.6959 -5.9731 22 1 -4.0020 -2.6452 -5.1089 23 1 -4.4036 -4.7725 -6.2016 24 1 -2.2079 -4.2647 -5.3063 25 6 0.6428 -2.4670 -6.8314 26 6 1.4548 -2.2394 -5.7603 27 1 -0.3634 0.6363 0.8069 28 1 -0.3632 0.3807 -0.9546 29 1 -0.3633 -1.0171 0.1475 30 1 3.2037 1.3482 0.1476 31 1 1.9163 1.8923 -0.9545 32 1 1.6808 1.9918 0.8070 33 1 3.8838 -1.1695 2.0711 34 1 2.9718 -2.6874 0.0002 35 1 1.1575 -2.6019 0.0011 36 1 0.3103 -1.0455 -2.1237 37 1 -0.8921 -1.3240 -3.4694 38 1 -2.3598 -1.7182 -5.3824 39 1 -4.7057 -3.1260 -8.4268 40 1 1.0654 -2.7887 -7.7717 41 1 2.5215 -2.3807 -5.8528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275317868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:27 Heat of formation + Delta-G solvation = -56.520724 kcal Electronic energy + Delta-G solvation = -22770.044727 eV Core-core repulsion = 19421.749322 eV Total energy + Delta-G solvation = -3348.295405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63710 -38.77395 -37.22080 -35.51607 -33.86168 -32.92576 -30.86186 -30.34416 -29.86281 -27.61189 -26.20512 -24.18308 -22.71952 -21.71708 -21.37959 -19.71433 -18.83142 -17.65960 -17.59522 -16.76813 -15.90200 -15.54635 -15.33752 -14.60504 -14.15477 -14.05595 -13.95817 -13.57326 -13.52009 -12.91558 -12.84934 -12.64161 -12.61031 -12.45671 -12.29980 -12.16345 -11.82396 -11.78172 -11.17525 -11.03094 -10.99356 -10.82351 -10.41024 -10.30044 -10.21983 -9.90328 -9.75420 -9.35382 -9.06219 -8.62319 -7.96878 -7.74874 -7.23409 -4.73876 1.99755 2.65834 2.92358 3.06341 3.15655 3.65230 3.67813 3.78663 3.79856 4.27532 4.44130 4.46775 4.77005 4.86675 5.04327 5.21531 5.29558 5.45786 5.48834 5.49769 5.68153 5.74276 5.76329 5.79421 5.89364 5.90675 6.00815 6.13865 6.18912 6.37162 6.42496 6.60866 6.72310 6.90093 6.96400 7.23315 7.36250 7.42794 7.53079 7.66929 7.92668 8.09634 8.12124 8.43930 8.53444 8.95793 9.76545 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.003831 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.921363 B = 7306.361709 C = 7838.230890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 C -0.131 4.131 4 C 0.089 3.911 5 H 0.070 0.930 6 O -0.547 6.547 7 C -0.186 4.186 8 C 0.145 3.855 9 H 0.114 0.886 10 N -0.732 5.732 11 C 0.572 3.428 12 O -0.570 6.570 13 C -0.284 4.284 14 C -0.036 4.036 15 C -0.248 4.248 16 C 0.107 3.893 17 C -0.425 4.425 18 H 0.096 0.904 19 C 0.082 3.918 20 N -0.787 5.787 21 Si 0.916 3.084 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.241 1.241 25 C -0.221 4.221 26 C -0.017 4.017 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.379 0.621 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.396 0.604 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.291 0.709 40 H 0.106 0.894 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 2.761 17.430 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 C -0.188 4.188 4 C 0.029 3.971 5 H 0.088 0.912 6 O -0.352 6.352 7 C -0.225 4.225 8 C 0.039 3.961 9 H 0.132 0.868 10 N -0.384 5.384 11 C 0.366 3.634 12 O -0.452 6.452 13 C -0.289 4.289 14 C -0.056 4.056 15 C -0.267 4.267 16 C 0.103 3.897 17 C -0.452 4.452 18 H 0.114 0.886 19 C -0.141 4.141 20 N -0.409 5.409 21 Si 0.742 3.258 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.164 1.164 25 C -0.241 4.241 26 C -0.036 4.036 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.226 0.774 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.233 0.767 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.999 3.123 16.748 17.499 hybrid contribution -0.894 -0.756 0.972 1.522 sum 3.105 2.367 17.720 18.145 Atomic orbital electron populations 1.21611 0.92470 1.02404 1.02812 1.22379 0.95730 0.95781 0.94737 1.21576 1.01729 0.94164 1.01365 1.22646 0.84243 0.95303 0.94939 0.91238 1.86452 1.28405 1.53946 1.66387 1.24139 1.03138 0.97903 0.97344 1.22373 0.95847 0.94111 0.83755 0.86824 1.45947 1.10431 1.71050 1.10957 1.18545 0.87734 0.74796 0.82292 1.90645 1.15966 1.54116 1.84434 1.18942 0.92614 1.22561 0.94746 1.20399 0.92633 0.95954 0.96566 1.20697 0.98330 1.12407 0.95255 1.17854 0.92618 0.87345 0.91851 1.19763 0.94166 1.35897 0.95378 0.88564 1.26371 0.95435 0.93154 0.99091 1.69613 1.04361 1.32202 1.34685 0.86222 0.79618 0.78945 0.81034 1.19288 1.21490 1.16389 1.20743 0.93662 1.11240 0.98414 1.20459 0.98355 0.93191 0.91639 0.91677 0.91267 0.91937 0.91262 0.92551 0.92781 0.77353 0.90615 0.89185 0.76709 0.88960 0.87887 0.89841 0.87632 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.96 37.16 0.30 -0.96 16 2 C -0.09 -0.93 1.35 -153.60 -0.21 -1.14 16 3 C -0.13 -1.45 8.99 37.16 0.33 -1.11 16 4 C 0.09 0.86 4.71 -25.92 -0.12 0.74 16 5 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 6 O -0.55 -5.31 12.18 -35.23 -0.43 -5.74 16 7 C -0.19 -2.14 7.35 -25.92 -0.19 -2.34 16 8 C 0.15 2.02 3.60 -67.03 -0.24 1.78 16 9 H 0.11 1.88 7.50 -51.93 -0.39 1.49 16 10 N -0.73 -11.62 5.21 -53.93 -0.28 -11.90 16 11 C 0.57 11.63 7.76 -12.42 -0.10 11.54 16 12 O -0.57 -13.17 15.96 5.29 0.08 -13.09 16 13 C -0.28 -6.13 5.89 -104.73 -0.62 -6.74 16 14 C -0.04 -0.75 9.47 -39.61 -0.38 -1.12 16 15 C -0.25 -5.61 7.11 -39.27 -0.28 -5.89 16 16 C 0.11 2.59 5.11 -106.80 -0.55 2.05 16 17 C -0.43 -10.82 9.56 -37.74 -0.36 -11.18 16 18 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.08 2.00 5.40 -17.31 -0.09 1.91 16 20 N -0.79 -19.50 13.92 55.56 0.77 -18.72 16 21 Si 0.92 19.34 24.52 -169.99 -4.17 15.17 16 22 H -0.27 -5.39 6.71 56.52 0.38 -5.01 16 23 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.24 -5.28 6.87 56.52 0.39 -4.89 16 25 C -0.22 -5.10 9.73 -39.27 -0.38 -5.48 16 26 C -0.02 -0.39 9.52 -39.61 -0.38 -0.76 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.67 7.23 -51.93 -0.38 0.29 16 29 H 0.06 0.54 7.32 -51.93 -0.38 0.15 16 30 H 0.07 0.83 7.07 -51.93 -0.37 0.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.38 2.03 9.12 45.56 0.42 2.45 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.98 7.63 -51.93 -0.40 0.59 16 36 H 0.40 5.54 4.66 -40.82 -0.19 5.35 16 37 H 0.09 1.55 6.37 -52.49 -0.33 1.22 16 38 H 0.10 2.27 4.72 -52.49 -0.25 2.03 16 39 H 0.29 6.45 8.29 -40.82 -0.34 6.12 16 40 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.11 2.30 7.63 -52.49 -0.40 1.90 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -29.22 330.33 -7.09 -36.31 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -4.79 Total: 11.71 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -3.26 Total: -18.71 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.49 Total: -30.63 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.34 Total: -18.83 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.17 Total: 15.17 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.22 -7.09 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275317868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.211 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds