Wall clock time and date at job start Tue Mar 31 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 112.90486 * 2 1 4 4 C 1.53787 * 113.61366 * 131.24483 * 2 1 3 5 5 H 1.09001 * 113.61012 * 334.57369 * 4 2 1 6 6 O 1.42903 * 113.61556 * 203.66944 * 4 2 1 7 7 C 1.53778 * 87.07787 * 89.12074 * 4 2 1 8 8 C 1.53779 * 87.17591 * 25.39066 * 7 4 2 9 9 H 1.09004 * 113.61523 * 89.15469 * 8 7 4 10 10 N 1.46499 * 113.61987 * 220.06308 * 8 7 4 11 11 C 1.34780 * 120.00006 * 255.49933 * 10 8 7 12 12 O 1.21588 * 119.99493 * 359.97438 * 11 10 8 13 13 C 1.47636 * 120.00266 * 179.97438 * 11 10 8 14 14 C 1.40018 * 119.89308 * 359.72316 * 13 11 10 15 15 C 1.36311 * 120.10529 * 179.72155 * 14 13 11 16 16 C 1.40892 * 119.89133 * 0.55404 * 15 14 13 17 17 C 1.41111 * 120.10434 * 179.74780 * 16 15 14 18 18 H 1.07996 * 120.00170 * 150.12750 * 17 16 15 19 19 C 1.40231 * 119.99679 * 330.12105 * 17 16 15 20 20 N 1.30646 * 119.99441 * 161.75485 * 19 17 16 21 21 Si 1.86804 * 120.00165 * 341.76135 * 19 17 16 22 22 H 1.48500 * 109.47243 * 95.40721 * 21 19 17 23 23 H 1.48496 * 109.46814 * 215.40985 * 21 19 17 24 24 H 1.48497 * 109.46705 * 335.40777 * 21 19 17 25 25 C 1.40886 * 119.79501 * 359.71577 * 16 15 14 26 26 C 1.36316 * 119.89047 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47703 * 308.25619 * 1 2 3 28 28 H 1.09006 * 109.46451 * 68.25859 * 1 2 3 29 29 H 1.09005 * 109.47027 * 188.25362 * 1 2 3 30 30 H 1.09000 * 109.46449 * 171.74138 * 3 2 1 31 31 H 1.08997 * 109.47054 * 291.74068 * 3 2 1 32 32 H 1.08998 * 109.47208 * 51.74398 * 3 2 1 33 33 H 0.96692 * 113.99495 * 182.99862 * 6 4 2 34 34 H 1.09002 * 113.61380 * 139.98001 * 7 4 2 35 35 H 1.09004 * 113.61697 * 270.80163 * 7 4 2 36 36 H 0.96998 * 120.00139 * 75.49047 * 10 8 7 37 37 H 1.08000 * 119.94744 * 359.97438 * 14 13 11 38 38 H 1.07997 * 120.05766 * 180.27477 * 15 14 13 39 39 H 0.97006 * 119.99241 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.05874 * 180.02562 * 25 16 15 41 41 H 1.08000 * 119.94752 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9290 1.0595 5 1 1.4944 -1.1085 1.9146 6 8 3.4741 -0.5629 1.4393 7 6 2.0930 -2.0425 0.0002 8 6 2.1449 -0.9307 -1.0610 9 1 3.1577 -0.6519 -1.3522 10 7 1.2680 -1.1738 -2.2091 11 6 1.7919 -1.5759 -3.3840 12 8 2.9924 -1.7364 -3.4911 13 6 0.9082 -1.8214 -4.5409 14 6 -0.4745 -1.6415 -4.4135 15 6 -1.2939 -1.8615 -5.4804 16 6 -0.7485 -2.2818 -6.7096 17 6 -1.5931 -2.5160 -7.8155 18 1 -1.2241 -2.3628 -8.8188 19 6 -2.9116 -2.9479 -7.6116 20 7 -3.7937 -2.8269 -8.5677 21 14 -3.4067 -3.6959 -5.9731 22 1 -4.0020 -2.6452 -5.1089 23 1 -4.4036 -4.7725 -6.2016 24 1 -2.2079 -4.2647 -5.3063 25 6 0.6428 -2.4670 -6.8314 26 6 1.4548 -2.2394 -5.7603 27 1 -0.3634 0.6363 0.8069 28 1 -0.3632 0.3807 -0.9546 29 1 -0.3633 -1.0171 0.1475 30 1 3.2037 1.3482 0.1476 31 1 1.9163 1.8923 -0.9545 32 1 1.6808 1.9918 0.8070 33 1 3.8838 -1.1695 2.0711 34 1 2.9718 -2.6874 0.0002 35 1 1.1575 -2.6019 0.0011 36 1 0.3103 -1.0455 -2.1237 37 1 -0.8921 -1.3240 -3.4694 38 1 -2.3598 -1.7182 -5.3824 39 1 -4.7057 -3.1260 -8.4268 40 1 1.0654 -2.7887 -7.7717 41 1 2.5215 -2.3807 -5.8528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275317868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:26 Heat of formation + Delta-G solvation = -76.785442 kcal Electronic energy + Delta-G solvation = -22770.923471 eV Core-core repulsion = 19421.749322 eV Total energy + Delta-G solvation = -3349.174149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69377 -40.29908 -38.90152 -36.40704 -35.67247 -34.28724 -32.46846 -31.73402 -31.25482 -28.37729 -27.89212 -25.41833 -23.64311 -23.29454 -23.11373 -21.29713 -19.87174 -19.47960 -18.67015 -17.98771 -17.39254 -16.90060 -16.23079 -16.04511 -15.73115 -15.54804 -15.49845 -14.87657 -14.61229 -14.52344 -14.36981 -14.04070 -13.83587 -13.52209 -13.37177 -13.25733 -12.99699 -12.80329 -12.70758 -12.65229 -12.21506 -12.02467 -11.97706 -11.85495 -11.55018 -11.11592 -11.05554 -10.85408 -10.56518 -9.97360 -9.72297 -9.53138 -9.04127 -6.63884 0.25246 0.87821 1.25225 1.39172 1.50063 1.96244 2.10965 2.37220 2.67792 3.04087 3.38465 3.47594 3.65044 3.82950 4.04222 4.12259 4.16490 4.23558 4.25766 4.50915 4.56463 4.65210 4.72986 4.77059 4.83660 4.91165 4.95191 4.97820 5.00300 5.11447 5.14376 5.16085 5.37018 5.45590 5.47414 5.57683 5.64818 5.77127 5.81688 6.10313 6.24455 6.58732 6.66308 6.71026 6.92561 7.40577 8.01940 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.003831 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.921363 B = 7306.361709 C = 7838.230890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.102 3.898 5 H 0.101 0.899 6 O -0.564 6.564 7 C -0.182 4.182 8 C 0.124 3.876 9 H 0.081 0.919 10 N -0.711 5.711 11 C 0.570 3.430 12 O -0.604 6.604 13 C -0.283 4.283 14 C -0.027 4.027 15 C -0.256 4.256 16 C 0.095 3.905 17 C -0.464 4.464 18 H 0.064 0.936 19 C 0.050 3.950 20 N -0.823 5.823 21 Si 0.967 3.033 22 H -0.243 1.243 23 H -0.275 1.275 24 H -0.253 1.253 25 C -0.233 4.233 26 C -0.026 4.026 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.302 0.698 40 H 0.107 0.893 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 3.000 21.469 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 C -0.188 4.188 4 C 0.042 3.958 5 H 0.119 0.881 6 O -0.373 6.373 7 C -0.221 4.221 8 C 0.019 3.981 9 H 0.099 0.901 10 N -0.363 5.363 11 C 0.363 3.637 12 O -0.488 6.488 13 C -0.287 4.287 14 C -0.046 4.046 15 C -0.275 4.275 16 C 0.092 3.908 17 C -0.491 4.491 18 H 0.082 0.918 19 C -0.169 4.169 20 N -0.447 5.447 21 Si 0.789 3.211 22 H -0.168 1.168 23 H -0.201 1.201 24 H -0.177 1.177 25 C -0.252 4.252 26 C -0.046 4.046 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.247 0.753 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.781 3.378 20.822 21.277 hybrid contribution -0.298 -0.761 -0.207 0.843 sum 2.484 2.617 20.615 20.928 Atomic orbital electron populations 1.21668 0.90615 1.03695 1.03437 1.22422 0.97083 0.95062 0.93434 1.21559 1.01004 0.94695 1.01515 1.22592 0.84691 0.93237 0.95238 0.88095 1.86420 1.28758 1.54906 1.67202 1.24143 1.03421 0.97674 0.96822 1.22607 0.94402 0.97295 0.83768 0.90129 1.45796 1.11324 1.69039 1.10113 1.18427 0.87012 0.75001 0.83235 1.90636 1.17290 1.55717 1.85119 1.19286 0.93624 1.20927 0.94869 1.20745 0.91726 0.94271 0.97846 1.20862 0.99198 1.12395 0.95039 1.18011 0.92813 0.87490 0.92503 1.19719 0.95673 1.39237 0.94467 0.91796 1.27040 0.94828 0.92896 1.02124 1.69623 1.05171 1.33523 1.36377 0.85462 0.79083 0.79018 0.77559 1.16795 1.20115 1.17685 1.20864 0.93732 1.11687 0.98945 1.20603 0.98537 0.93352 0.92064 0.89682 0.91715 0.90709 0.92768 0.93566 0.90917 0.75158 0.91561 0.87858 0.75252 0.84445 0.86925 0.88742 0.87503 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.96 71.98 0.57 -1.33 16 2 C -0.08 -1.47 1.35 -51.59 -0.07 -1.54 16 3 C -0.13 -2.59 8.99 71.99 0.65 -1.94 16 4 C 0.10 1.61 4.71 31.12 0.15 1.75 16 5 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 6 O -0.56 -9.50 12.18 -148.98 -1.81 -11.31 16 7 C -0.18 -3.66 7.35 31.12 0.23 -3.43 16 8 C 0.12 3.24 3.60 45.58 0.16 3.40 16 9 H 0.08 2.67 7.50 -2.38 -0.02 2.65 16 10 N -0.71 -20.82 5.21 -442.81 -2.31 -23.13 16 11 C 0.57 22.41 7.76 86.72 0.67 23.08 16 12 O -0.60 -27.82 15.96 -3.99 -0.06 -27.89 16 13 C -0.28 -11.77 5.89 -19.93 -0.12 -11.89 16 14 C -0.03 -1.04 9.47 22.25 0.21 -0.83 16 15 C -0.26 -11.16 7.11 22.47 0.16 -11.00 16 16 C 0.10 4.67 5.11 -21.28 -0.11 4.56 16 17 C -0.46 -24.53 9.56 23.46 0.22 -24.31 16 18 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 19 C 0.05 2.47 5.40 85.35 0.46 2.93 16 20 N -0.82 -41.61 13.92 21.87 0.30 -41.31 16 21 Si 0.97 38.57 24.52 68.60 1.68 40.25 16 22 H -0.24 -8.75 6.71 99.48 0.67 -8.08 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.25 -10.53 6.87 99.48 0.68 -9.84 16 25 C -0.23 -10.97 9.73 22.47 0.22 -10.75 16 26 C -0.03 -1.18 9.52 22.25 0.21 -0.97 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.97 7.23 -2.38 -0.02 0.95 16 29 H 0.07 0.88 7.32 -2.38 -0.02 0.86 16 30 H 0.05 1.23 7.07 -2.39 -0.02 1.22 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.40 3.15 9.12 -74.06 -0.68 2.47 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 1.83 7.63 -2.38 -0.02 1.81 16 36 H 0.41 9.82 4.66 -92.71 -0.43 9.39 16 37 H 0.14 3.94 6.37 -2.91 -0.02 3.92 16 38 H 0.11 4.68 4.72 -2.91 -0.01 4.66 16 39 H 0.30 13.45 8.29 -92.70 -0.77 12.69 16 40 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.11 4.76 7.63 -2.91 -0.02 4.74 16 Total: -1.00 -65.22 330.33 1.32 -63.91 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.11 Total: 31.74 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 3.62 Total: -32.26 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -2.00 Total: -64.44 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -1.88 Total: -39.20 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.68 Total: 40.25 kcal Total: -65.22 1.32 -63.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275317868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.879 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds