Wall clock time and date at job start Tue Mar 31 2020 07:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.90533 * 2 1 4 4 C 1.53782 * 113.61019 * 228.75223 * 2 1 3 5 5 H 1.08997 * 113.61637 * 156.33471 * 4 2 1 6 6 O 1.42903 * 113.69216 * 25.44064 * 4 2 1 7 7 C 1.53780 * 87.08152 * 270.88126 * 4 2 1 8 8 C 1.53774 * 113.61637 * 131.25641 * 2 1 3 9 9 H 1.08993 * 113.69187 * 203.67202 * 8 2 1 10 10 N 1.46506 * 113.61699 * 334.56306 * 8 2 1 11 11 C 1.34767 * 120.00314 * 202.00383 * 10 8 2 12 12 O 1.21591 * 120.00387 * 359.97438 * 11 10 8 13 13 C 1.47640 * 120.00092 * 179.97438 * 11 10 8 14 14 C 1.40016 * 119.89977 * 180.02562 * 13 11 10 15 15 C 1.36309 * 120.10950 * 180.02562 * 14 13 11 16 16 C 1.40885 * 119.89477 * 0.02562 * 15 14 13 17 17 C 1.41107 * 120.10540 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00211 * 334.90592 * 17 16 15 19 19 C 1.40229 * 120.00026 * 154.90541 * 17 16 15 20 20 N 1.30647 * 120.00106 * 342.66281 * 19 17 16 21 21 Si 1.86803 * 120.00122 * 162.66213 * 19 17 16 22 22 H 1.48502 * 109.46974 * 265.58208 * 21 19 17 23 23 H 1.48499 * 109.46692 * 25.57707 * 21 19 17 24 24 H 1.48501 * 109.47194 * 145.57873 * 21 19 17 25 25 C 1.40888 * 119.79101 * 0.25211 * 16 15 14 26 26 C 1.36320 * 119.89295 * 359.46536 * 25 16 15 27 27 H 1.09003 * 109.47059 * 288.74782 * 1 2 3 28 28 H 1.08990 * 109.47531 * 48.74555 * 1 2 3 29 29 H 1.09003 * 109.47529 * 168.75020 * 1 2 3 30 30 H 1.09001 * 109.46425 * 191.25808 * 3 2 1 31 31 H 1.08994 * 109.47157 * 311.25234 * 3 2 1 32 32 H 1.08998 * 109.47020 * 71.26019 * 3 2 1 33 33 H 0.96700 * 113.99701 * 182.95821 * 6 4 2 34 34 H 1.08997 * 113.61727 * 220.02260 * 7 4 2 35 35 H 1.09008 * 113.61361 * 89.11939 * 7 4 2 36 36 H 0.96999 * 119.99364 * 22.00650 * 10 8 2 37 37 H 1.08004 * 119.94000 * 0.02562 * 14 13 11 38 38 H 1.08004 * 120.05114 * 180.02562 * 15 14 13 39 39 H 0.97000 * 120.00026 * 179.97438 * 20 19 17 40 40 H 1.08007 * 120.05721 * 179.74888 * 25 16 15 41 41 H 1.07995 * 119.94681 * 180.30272 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1459 -0.9290 -1.0594 5 1 3.1589 -0.6499 -1.3491 6 8 1.2931 -1.1653 -2.1815 7 6 2.0929 -2.0426 -0.0002 8 6 2.1460 -0.9291 1.0592 9 1 3.1590 -0.6510 1.3498 10 7 1.2705 -1.1705 2.2088 11 6 1.7957 -1.5707 3.3836 12 8 2.9962 -1.7319 3.4895 13 6 0.9134 -1.8134 4.5422 14 6 1.4613 -2.2286 5.7619 15 6 0.6506 -2.4545 6.8342 16 6 -0.7409 -2.2700 6.7137 17 6 -1.5843 -2.5030 7.8207 18 1 -1.2742 -3.1803 8.6027 19 6 -2.8251 -1.8553 7.9054 20 7 -3.0646 -0.8034 7.1685 21 14 -4.1358 -2.4965 9.0718 22 1 -5.0479 -3.4098 8.3375 23 1 -3.4885 -3.2342 10.1862 24 1 -4.9128 -1.3553 9.6188 25 6 -1.2883 -1.8578 5.4826 26 6 -0.4690 -1.6288 4.4174 27 1 -0.3633 0.3303 0.9732 28 1 -0.3634 0.6776 -0.7725 29 1 -0.3634 -1.0079 -0.2005 30 1 3.1953 1.3516 -0.2006 31 1 1.6427 2.0077 -0.7726 32 1 1.9628 1.8725 0.9732 33 1 1.6574 -1.7845 -2.8288 34 1 2.9716 -2.6875 -0.0002 35 1 1.1568 -2.6010 -0.0002 36 1 0.3127 -1.0424 2.1242 37 1 2.5282 -2.3701 5.8533 38 1 1.0744 -2.7743 7.7748 39 1 -3.9230 -0.3555 7.2268 40 1 -2.3548 -1.7190 5.3843 41 1 -0.8872 -1.3081 3.4748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275317872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:31 Heat of formation + Delta-G solvation = -78.387938 kcal Electronic energy + Delta-G solvation = -22625.713485 eV Core-core repulsion = 19276.469847 eV Total energy + Delta-G solvation = -3349.243638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66368 -40.16741 -38.75366 -36.41278 -35.67183 -34.25017 -32.02362 -31.36258 -31.26687 -28.44991 -27.88614 -25.33286 -23.65989 -23.31744 -22.75870 -21.22192 -19.79938 -19.36022 -18.53351 -18.12632 -17.29471 -16.74316 -16.12768 -15.93859 -15.75201 -15.54566 -15.26591 -15.00163 -14.52817 -14.26163 -13.95990 -13.88191 -13.72757 -13.43639 -13.25381 -13.22525 -13.01609 -12.86538 -12.67747 -12.54546 -12.38496 -12.02656 -11.77291 -11.70328 -11.37578 -11.34857 -11.13858 -10.78008 -10.58479 -9.95458 -9.58716 -9.40632 -8.79688 -6.49330 0.42699 1.13628 1.38864 1.43039 1.53811 2.11112 2.17341 2.36170 2.77125 3.25999 3.33791 3.63736 3.70106 3.81884 3.88246 4.19685 4.24432 4.28588 4.43404 4.48398 4.55805 4.63720 4.76740 4.89875 4.91120 4.93036 5.02104 5.02518 5.06506 5.12342 5.14702 5.28747 5.36462 5.42848 5.56717 5.64792 5.81716 5.93802 5.98530 6.21708 6.53024 6.69771 6.76413 6.87819 6.94450 7.43409 8.15832 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.003443 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.518198 B = 8130.333226 C = 8713.036224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.136 4.136 4 C 0.104 3.896 5 H 0.104 0.896 6 O -0.565 6.565 7 C -0.181 4.181 8 C 0.121 3.879 9 H 0.099 0.901 10 N -0.712 5.712 11 C 0.572 3.428 12 O -0.605 6.605 13 C -0.295 4.295 14 C -0.032 4.032 15 C -0.252 4.252 16 C 0.103 3.897 17 C -0.474 4.474 18 H 0.085 0.915 19 C 0.038 3.962 20 N -0.799 5.799 21 Si 0.988 3.012 22 H -0.259 1.259 23 H -0.257 1.257 24 H -0.265 1.265 25 C -0.196 4.196 26 C -0.054 4.054 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.395 0.605 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.406 0.594 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.297 0.703 40 H 0.113 0.887 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 1.784 -14.475 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.080 4.080 3 C -0.193 4.193 4 C 0.044 3.956 5 H 0.122 0.878 6 O -0.372 6.372 7 C -0.220 4.220 8 C 0.016 3.984 9 H 0.117 0.883 10 N -0.363 5.363 11 C 0.366 3.634 12 O -0.489 6.489 13 C -0.299 4.299 14 C -0.051 4.051 15 C -0.272 4.272 16 C 0.099 3.901 17 C -0.501 4.501 18 H 0.104 0.896 19 C -0.181 4.181 20 N -0.422 5.422 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.181 1.181 24 H -0.189 1.189 25 C -0.216 4.216 26 C -0.073 4.073 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.245 0.755 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.296 2.304 -14.164 14.533 hybrid contribution -0.430 -0.547 0.503 0.858 sum 1.866 1.757 -13.662 13.900 Atomic orbital electron populations 1.21398 0.92313 1.02741 1.01644 1.22382 0.97198 0.95264 0.93153 1.21757 1.01165 0.94288 1.02133 1.23150 0.94016 0.94075 0.84372 0.87816 1.86466 1.47395 1.68655 1.34721 1.24129 1.03052 0.98068 0.96727 1.22373 0.95089 0.97152 0.83806 0.88279 1.45741 1.11204 1.69328 1.10053 1.18426 0.87014 0.74813 0.83157 1.90599 1.17037 1.56076 1.85231 1.19210 0.93648 1.22026 0.95032 1.20511 0.98196 0.94302 0.92140 1.20866 0.93574 1.14312 0.98415 1.18131 0.91766 0.86953 0.93209 1.20132 1.01236 1.22983 1.05784 0.89647 1.26925 1.00667 0.92868 0.97613 1.69761 1.24811 1.13520 1.34132 0.85089 0.76863 0.79063 0.78189 1.18336 1.18101 1.18924 1.21002 0.99358 1.08555 0.92658 1.20691 0.92025 0.96686 0.97906 0.92790 0.90957 0.92170 0.91298 0.91040 0.93039 0.75492 0.90775 0.89589 0.75597 0.87869 0.87723 0.89179 0.86879 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 7.47 71.98 0.54 -2.14 16 2 C -0.08 -1.69 1.35 -51.66 -0.07 -1.76 16 3 C -0.14 -2.60 9.20 71.98 0.66 -1.94 16 4 C 0.10 1.86 4.62 31.12 0.14 2.00 16 5 H 0.10 1.47 7.96 -2.39 -0.02 1.45 16 6 O -0.56 -9.46 12.77 -148.98 -1.90 -11.36 16 7 C -0.18 -4.11 7.36 31.12 0.23 -3.88 16 8 C 0.12 3.31 3.65 45.51 0.17 3.47 16 9 H 0.10 2.99 7.49 -2.39 -0.02 2.98 16 10 N -0.71 -23.60 5.21 -443.11 -2.31 -25.91 16 11 C 0.57 24.43 7.76 86.73 0.67 25.10 16 12 O -0.60 -28.93 15.96 -4.00 -0.06 -29.00 16 13 C -0.29 -13.65 5.89 -19.93 -0.12 -13.77 16 14 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 15 C -0.25 -12.61 9.73 22.47 0.22 -12.39 16 16 C 0.10 5.36 5.57 -21.28 -0.12 5.24 16 17 C -0.47 -24.03 9.04 23.46 0.21 -23.82 16 18 H 0.09 4.16 7.91 -2.91 -0.02 4.13 16 19 C 0.04 1.78 5.14 85.35 0.44 2.22 16 20 N -0.80 -38.25 10.97 21.87 0.24 -38.01 16 21 Si 0.99 34.82 29.59 68.60 2.03 36.85 16 22 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 23 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 24 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.20 -9.78 8.63 22.47 0.19 -9.59 16 26 C -0.05 -2.41 9.47 22.25 0.21 -2.20 16 27 H 0.05 1.21 7.04 -2.39 -0.02 1.19 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.34 7.19 -2.39 -0.02 1.32 16 30 H 0.07 1.15 7.94 -2.39 -0.02 1.13 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.39 3.20 9.12 -74.06 -0.68 2.52 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 2.08 7.65 -2.38 -0.02 2.06 16 36 H 0.41 12.26 4.58 -92.71 -0.42 11.83 16 37 H 0.10 4.86 7.63 -2.91 -0.02 4.84 16 38 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 39 H 0.30 12.61 8.29 -92.71 -0.77 11.85 16 40 H 0.11 5.70 6.19 -2.91 -0.02 5.69 16 41 H 0.12 4.39 6.37 -2.91 -0.02 4.37 16 Total: -1.00 -62.73 336.22 1.55 -61.17 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: -0.04 Total: 41.07 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 3.59 Total: -34.81 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -2.07 Total: -63.92 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.97 Total: -40.36 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Total: -62.73 1.55 -61.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275317872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.214 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds