Wall clock time and date at job start Tue Mar 31 2020 07:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.90617 * 2 1 4 4 C 1.53784 * 113.61368 * 131.25170 * 2 1 3 5 5 H 1.08994 * 113.61185 * 254.52686 * 4 2 1 6 6 O 1.42898 * 113.61442 * 25.43253 * 4 2 1 7 7 C 1.53785 * 87.08023 * 139.97758 * 4 2 1 8 8 C 1.53782 * 113.60973 * 228.74758 * 2 1 3 9 9 H 1.08992 * 113.62069 * 334.56764 * 8 2 1 10 10 N 1.46501 * 113.61332 * 105.47430 * 8 2 1 11 11 C 1.34774 * 120.00001 * 205.00196 * 10 8 2 12 12 O 1.21587 * 120.00213 * 359.97438 * 11 10 8 13 13 C 1.47647 * 120.00097 * 179.97438 * 11 10 8 14 14 C 1.40009 * 119.89265 * 359.72413 * 13 11 10 15 15 C 1.36324 * 120.10516 * 179.71815 * 14 13 11 16 16 C 1.40882 * 119.88749 * 0.57426 * 15 14 13 17 17 C 1.41108 * 120.10140 * 179.72060 * 16 15 14 18 18 H 1.08000 * 120.00261 * 204.62550 * 17 16 15 19 19 C 1.40233 * 120.00192 * 24.62455 * 17 16 15 20 20 N 1.30647 * 119.99670 * 17.89111 * 19 17 16 21 21 Si 1.86797 * 120.00128 * 197.89276 * 19 17 16 22 22 H 1.48496 * 109.47237 * 90.00343 * 21 19 17 23 23 H 1.48501 * 109.46741 * 210.00067 * 21 19 17 24 24 H 1.48501 * 109.47037 * 329.99844 * 21 19 17 25 25 C 1.40886 * 119.79815 * 359.69868 * 16 15 14 26 26 C 1.36318 * 119.88864 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.47108 * 308.24835 * 1 2 3 28 28 H 1.09000 * 109.47327 * 68.25383 * 1 2 3 29 29 H 1.09006 * 109.47422 * 188.25404 * 1 2 3 30 30 H 1.08999 * 109.46529 * 171.75098 * 3 2 1 31 31 H 1.08998 * 109.47069 * 291.74536 * 3 2 1 32 32 H 1.09000 * 109.47383 * 51.75031 * 3 2 1 33 33 H 0.96706 * 114.00216 * 179.97438 * 6 4 2 34 34 H 1.08997 * 113.60810 * 89.11227 * 7 4 2 35 35 H 1.08998 * 113.61430 * 220.01785 * 7 4 2 36 36 H 0.97002 * 119.99868 * 24.99094 * 10 8 2 37 37 H 1.08000 * 119.94981 * 0.02562 * 14 13 11 38 38 H 1.08006 * 120.05319 * 180.29469 * 15 14 13 39 39 H 0.96998 * 119.99718 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.05360 * 180.02562 * 25 16 15 41 41 H 1.07998 * 119.94253 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 1.0594 5 1 2.5650 -0.3989 1.9145 6 8 1.2919 -2.0100 1.4390 7 6 3.1923 -1.3137 -0.0001 8 6 2.1459 -0.9291 -1.0594 9 1 1.4945 -1.7536 -1.3490 10 7 2.7091 -0.2165 -2.2088 11 6 2.8171 -0.8378 -3.3999 12 8 2.4476 -1.9898 -3.5205 13 6 3.3842 -0.1194 -4.5585 14 6 3.8037 1.2091 -4.4187 15 6 4.3332 1.8746 -5.4841 16 6 4.4468 1.2274 -6.7303 17 6 4.9887 1.9139 -7.8376 18 1 4.7298 1.6099 -8.8410 19 6 5.8636 2.9910 -7.6351 20 7 6.4515 3.1466 -6.4788 21 14 6.1883 4.2034 -9.0186 22 1 5.2032 5.3123 -8.9464 23 1 7.5617 4.7519 -8.8839 24 1 6.0582 3.5099 -10.3252 25 6 4.0180 -0.1076 -6.8675 26 6 3.4960 -0.7671 -5.7947 27 1 -0.3633 0.6362 0.8071 28 1 -0.3634 0.3807 -0.9545 29 1 -0.3634 -1.0171 0.1475 30 1 3.2037 1.3481 0.1474 31 1 1.9162 1.8922 -0.9545 32 1 1.6809 1.9917 0.8070 33 1 1.6740 -2.5981 2.1048 34 1 4.0710 -0.6687 0.0000 35 1 3.4443 -2.3741 0.0000 36 1 3.0041 0.7026 -2.1126 37 1 3.7122 1.7058 -3.4641 38 1 4.6609 2.8979 -5.3741 39 1 7.0569 3.8914 -6.3389 40 1 4.1035 -0.6079 -7.8208 41 1 3.1666 -1.7903 -5.8990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275317873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:35 Heat of formation + Delta-G solvation = -58.570259 kcal Electronic energy + Delta-G solvation = -22642.199724 eV Core-core repulsion = 19293.815445 eV Total energy + Delta-G solvation = -3348.384279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54532 -38.57907 -36.99275 -35.44246 -33.87010 -32.78712 -30.60512 -29.90690 -29.43620 -27.53288 -26.16613 -24.16141 -22.64060 -21.72769 -20.92607 -19.58284 -18.69197 -17.58018 -17.44850 -16.52509 -15.78569 -15.41588 -15.25204 -14.55808 -14.03298 -13.99165 -13.76626 -13.53148 -13.18503 -12.89060 -12.61742 -12.55035 -12.36373 -12.18690 -12.10228 -11.93393 -11.70023 -11.35940 -11.29773 -11.09441 -10.99342 -10.83538 -10.63373 -10.14150 -10.03582 -9.82335 -9.56218 -9.35847 -8.91259 -8.49157 -7.72429 -7.54389 -7.04150 -4.60667 2.23376 2.91320 2.95277 2.97673 3.03334 3.73470 3.77762 3.85141 3.90507 4.37625 4.52368 4.56293 4.86891 4.94449 5.13476 5.28520 5.54664 5.55642 5.57723 5.59376 5.78097 5.86089 5.87660 5.98375 5.99294 6.04111 6.23817 6.27749 6.32335 6.46392 6.76604 6.82493 6.97812 7.09671 7.13699 7.43468 7.48858 7.66015 7.79457 7.85781 8.06927 8.28204 8.39565 8.62848 8.75105 9.11524 9.87931 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.003379 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.618639 B = 8284.949207 C = 8800.360278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.088 3.912 5 H 0.069 0.931 6 O -0.547 6.547 7 C -0.186 4.186 8 C 0.145 3.855 9 H 0.114 0.886 10 N -0.731 5.731 11 C 0.571 3.429 12 O -0.575 6.575 13 C -0.284 4.284 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.443 4.443 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.772 5.772 21 Si 0.914 3.086 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.239 4.239 26 C -0.022 4.022 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.378 0.622 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.397 0.603 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.286 0.714 40 H 0.098 0.902 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 0.186 12.920 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.192 4.192 4 C 0.028 3.972 5 H 0.087 0.913 6 O -0.352 6.352 7 C -0.225 4.225 8 C 0.039 3.961 9 H 0.132 0.868 10 N -0.383 5.383 11 C 0.366 3.634 12 O -0.457 6.457 13 C -0.289 4.289 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.395 5.395 21 Si 0.738 3.262 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.258 4.258 26 C -0.041 4.041 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.226 0.774 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.682 -0.192 12.510 13.359 hybrid contribution 0.928 0.780 -0.027 1.212 sum -3.754 0.588 12.483 13.049 Atomic orbital electron populations 1.21571 0.93241 1.02664 1.01307 1.22370 0.96800 0.94727 0.94856 1.21601 1.00796 0.94027 1.02800 1.22649 0.90948 0.88576 0.94984 0.91268 1.86456 1.44281 1.41245 1.63192 1.24140 0.98346 1.02652 0.97375 1.22331 0.94741 0.95226 0.83818 0.86794 1.45938 1.65780 1.16878 1.09722 1.18635 0.76540 0.85734 0.82470 1.90626 1.51934 1.18248 1.84917 1.18926 1.19592 0.96440 0.93906 1.20458 0.97403 0.93250 0.97106 1.20973 1.04942 1.00455 0.93357 1.17782 0.86778 0.90143 0.92763 1.19859 1.21752 1.10719 0.94779 0.89705 1.26099 0.93972 0.97631 0.96967 1.69746 1.18937 1.26736 1.24123 0.86205 0.78373 0.80239 0.81431 1.18934 1.20032 1.18280 1.20718 1.11751 0.95417 0.97925 1.20368 0.94334 0.97696 0.91739 0.92861 0.92576 0.91318 0.91940 0.91214 0.91790 0.77431 0.89160 0.90668 0.76644 0.89486 0.86202 0.90261 0.88391 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.99 37.16 0.33 -1.20 16 2 C -0.09 -1.01 1.35 -153.69 -0.21 -1.22 16 3 C -0.13 -1.36 7.94 37.16 0.30 -1.07 16 4 C 0.09 0.92 4.71 -25.92 -0.12 0.80 16 5 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 6 O -0.55 -5.65 12.17 -35.23 -0.43 -6.08 16 7 C -0.19 -2.30 7.36 -25.91 -0.19 -2.49 16 8 C 0.14 2.17 3.63 -67.11 -0.24 1.92 16 9 H 0.11 2.01 7.42 -51.93 -0.39 1.62 16 10 N -0.73 -12.50 5.18 -54.02 -0.28 -12.78 16 11 C 0.57 12.41 7.76 -12.42 -0.10 12.31 16 12 O -0.58 -14.06 15.92 5.29 0.08 -13.97 16 13 C -0.28 -6.57 5.89 -104.73 -0.62 -7.18 16 14 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 15 C -0.18 -4.35 8.64 -39.27 -0.34 -4.69 16 16 C 0.13 3.28 5.58 -106.81 -0.60 2.68 16 17 C -0.44 -11.03 9.04 -37.74 -0.34 -11.37 16 18 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 20 N -0.77 -18.40 10.95 55.56 0.61 -17.79 16 21 Si 0.91 17.22 29.60 -169.99 -5.03 12.19 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 25 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 26 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.87 7.07 -51.93 -0.37 0.50 16 30 H 0.06 0.59 7.32 -51.93 -0.38 0.21 16 31 H 0.07 0.74 7.29 -51.93 -0.38 0.36 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.38 2.22 9.12 45.56 0.42 2.64 16 34 H 0.09 1.07 7.63 -51.93 -0.40 0.67 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 6.08 4.74 -40.82 -0.19 5.89 16 37 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 38 H 0.12 2.96 6.15 -52.48 -0.32 2.63 16 39 H 0.29 6.12 8.29 -40.82 -0.34 5.79 16 40 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -29.44 335.56 -8.16 -37.60 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -4.83 Total: 14.53 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.35 Total: -18.75 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.33 Total: -30.57 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.34 Total: -20.06 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.44 -8.16 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275317873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.966 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds