Wall clock time and date at job start Tue Mar 31 2020 07:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.90617 * 2 1 4 4 C 1.53784 * 113.61368 * 131.25170 * 2 1 3 5 5 H 1.08994 * 113.61185 * 254.52686 * 4 2 1 6 6 O 1.42898 * 113.61442 * 25.43253 * 4 2 1 7 7 C 1.53785 * 87.08023 * 139.97758 * 4 2 1 8 8 C 1.53782 * 113.60973 * 228.74758 * 2 1 3 9 9 H 1.08992 * 113.62069 * 334.56764 * 8 2 1 10 10 N 1.46501 * 113.61332 * 105.47430 * 8 2 1 11 11 C 1.34774 * 120.00001 * 205.00196 * 10 8 2 12 12 O 1.21587 * 120.00213 * 359.97438 * 11 10 8 13 13 C 1.47647 * 120.00097 * 179.97438 * 11 10 8 14 14 C 1.40009 * 119.89265 * 359.72413 * 13 11 10 15 15 C 1.36324 * 120.10516 * 179.71815 * 14 13 11 16 16 C 1.40882 * 119.88749 * 0.57426 * 15 14 13 17 17 C 1.41108 * 120.10140 * 179.72060 * 16 15 14 18 18 H 1.08000 * 120.00261 * 204.62550 * 17 16 15 19 19 C 1.40233 * 120.00192 * 24.62455 * 17 16 15 20 20 N 1.30647 * 119.99670 * 17.89111 * 19 17 16 21 21 Si 1.86797 * 120.00128 * 197.89276 * 19 17 16 22 22 H 1.48496 * 109.47237 * 90.00343 * 21 19 17 23 23 H 1.48501 * 109.46741 * 210.00067 * 21 19 17 24 24 H 1.48501 * 109.47037 * 329.99844 * 21 19 17 25 25 C 1.40886 * 119.79815 * 359.69868 * 16 15 14 26 26 C 1.36318 * 119.88864 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.47108 * 308.24835 * 1 2 3 28 28 H 1.09000 * 109.47327 * 68.25383 * 1 2 3 29 29 H 1.09006 * 109.47422 * 188.25404 * 1 2 3 30 30 H 1.08999 * 109.46529 * 171.75098 * 3 2 1 31 31 H 1.08998 * 109.47069 * 291.74536 * 3 2 1 32 32 H 1.09000 * 109.47383 * 51.75031 * 3 2 1 33 33 H 0.96706 * 114.00216 * 179.97438 * 6 4 2 34 34 H 1.08997 * 113.60810 * 89.11227 * 7 4 2 35 35 H 1.08998 * 113.61430 * 220.01785 * 7 4 2 36 36 H 0.97002 * 119.99868 * 24.99094 * 10 8 2 37 37 H 1.08000 * 119.94981 * 0.02562 * 14 13 11 38 38 H 1.08006 * 120.05319 * 180.29469 * 15 14 13 39 39 H 0.96998 * 119.99718 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.05360 * 180.02562 * 25 16 15 41 41 H 1.07998 * 119.94253 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 1.0594 5 1 2.5650 -0.3989 1.9145 6 8 1.2919 -2.0100 1.4390 7 6 3.1923 -1.3137 -0.0001 8 6 2.1459 -0.9291 -1.0594 9 1 1.4945 -1.7536 -1.3490 10 7 2.7091 -0.2165 -2.2088 11 6 2.8171 -0.8378 -3.3999 12 8 2.4476 -1.9898 -3.5205 13 6 3.3842 -0.1194 -4.5585 14 6 3.8037 1.2091 -4.4187 15 6 4.3332 1.8746 -5.4841 16 6 4.4468 1.2274 -6.7303 17 6 4.9887 1.9139 -7.8376 18 1 4.7298 1.6099 -8.8410 19 6 5.8636 2.9910 -7.6351 20 7 6.4515 3.1466 -6.4788 21 14 6.1883 4.2034 -9.0186 22 1 5.2032 5.3123 -8.9464 23 1 7.5617 4.7519 -8.8839 24 1 6.0582 3.5099 -10.3252 25 6 4.0180 -0.1076 -6.8675 26 6 3.4960 -0.7671 -5.7947 27 1 -0.3633 0.6362 0.8071 28 1 -0.3634 0.3807 -0.9545 29 1 -0.3634 -1.0171 0.1475 30 1 3.2037 1.3481 0.1474 31 1 1.9162 1.8922 -0.9545 32 1 1.6809 1.9917 0.8070 33 1 1.6740 -2.5981 2.1048 34 1 4.0710 -0.6687 0.0000 35 1 3.4443 -2.3741 0.0000 36 1 3.0041 0.7026 -2.1126 37 1 3.7122 1.7058 -3.4641 38 1 4.6609 2.8979 -5.3741 39 1 7.0569 3.8914 -6.3389 40 1 4.1035 -0.6079 -7.8208 41 1 3.1666 -1.7903 -5.8990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275317873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:34 Heat of formation + Delta-G solvation = -77.635161 kcal Electronic energy + Delta-G solvation = -22643.026441 eV Core-core repulsion = 19293.815445 eV Total energy + Delta-G solvation = -3349.210995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67513 -40.18515 -38.75750 -36.40525 -35.67531 -34.23104 -32.01634 -31.33268 -31.21616 -28.38673 -27.90419 -25.45978 -23.64743 -23.34372 -22.76226 -21.23871 -19.79357 -19.36459 -18.56795 -17.92020 -17.28919 -16.85423 -16.22046 -15.97712 -15.75604 -15.50907 -15.16840 -14.87852 -14.54538 -14.45034 -13.97397 -13.77151 -13.66657 -13.38642 -13.27901 -13.19860 -12.99545 -12.86578 -12.73598 -12.64147 -12.37487 -12.01522 -11.89018 -11.76004 -11.37864 -11.14055 -11.06465 -10.82181 -10.55013 -9.93446 -9.58374 -9.40751 -8.79823 -6.48891 0.43148 1.13881 1.39264 1.43788 1.53674 2.11459 2.17672 2.42592 2.77211 3.03529 3.41110 3.63964 3.67755 3.84256 4.04318 4.21542 4.24392 4.29692 4.43268 4.50229 4.57505 4.71909 4.76247 4.90840 4.91288 4.96659 4.98864 5.03105 5.10944 5.13390 5.15454 5.29349 5.36508 5.47436 5.57233 5.67099 5.82144 5.94361 5.98580 6.21870 6.53112 6.72809 6.76557 6.88323 6.92916 7.45310 8.15522 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.003379 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.618639 B = 8284.949207 C = 8800.360278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C -0.136 4.136 4 C 0.104 3.896 5 H 0.103 0.897 6 O -0.564 6.564 7 C -0.182 4.182 8 C 0.123 3.877 9 H 0.080 0.920 10 N -0.712 5.712 11 C 0.569 3.431 12 O -0.610 6.610 13 C -0.295 4.295 14 C -0.053 4.053 15 C -0.196 4.196 16 C 0.102 3.898 17 C -0.474 4.474 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.796 5.796 21 Si 0.988 3.012 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.259 1.259 25 C -0.253 4.253 26 C -0.034 4.034 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.398 0.602 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.407 0.593 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.298 0.702 40 H 0.103 0.897 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 2.072 14.697 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.082 4.082 3 C -0.193 4.193 4 C 0.045 3.955 5 H 0.121 0.879 6 O -0.372 6.372 7 C -0.221 4.221 8 C 0.018 3.982 9 H 0.098 0.902 10 N -0.363 5.363 11 C 0.363 3.637 12 O -0.495 6.495 13 C -0.300 4.300 14 C -0.072 4.072 15 C -0.216 4.216 16 C 0.099 3.901 17 C -0.501 4.501 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.420 5.420 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.183 1.183 25 C -0.273 4.273 26 C -0.053 4.053 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.249 0.751 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.246 0.754 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.196 1.694 14.349 15.046 hybrid contribution 0.747 0.117 -0.505 0.910 sum -3.449 1.811 13.844 14.382 Atomic orbital electron populations 1.21551 0.93474 1.02191 1.01444 1.22408 0.96653 0.95542 0.93551 1.21645 1.01556 0.92751 1.03313 1.22564 0.89495 0.88232 0.95239 0.87905 1.86424 1.44818 1.41822 1.64148 1.24148 0.98610 1.02416 0.96937 1.22594 0.96164 0.95673 0.83806 0.90150 1.45787 1.64411 1.17157 1.08949 1.18512 0.76439 0.85285 0.83486 1.90604 1.53581 1.19681 1.85637 1.19200 1.19473 0.97022 0.94266 1.20701 0.95672 0.92709 0.98070 1.21017 1.06230 1.00486 0.93818 1.18130 0.87531 0.90681 0.93776 1.20125 1.22942 1.12315 0.94679 0.89737 1.26920 0.93004 0.98572 0.99559 1.69757 1.18990 1.27456 1.25763 0.85097 0.78670 0.77542 0.77881 1.18270 1.18852 1.18252 1.20848 1.12428 0.95547 0.98431 1.20504 0.94622 0.97839 0.92378 0.90767 0.93774 0.92709 0.90886 0.92033 0.89521 0.75121 0.88009 0.91552 0.75394 0.85918 0.86615 0.89112 0.87859 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.99 71.98 0.65 -2.21 16 2 C -0.08 -1.71 1.35 -51.65 -0.07 -1.78 16 3 C -0.14 -2.27 7.94 71.98 0.57 -1.70 16 4 C 0.10 1.86 4.71 31.12 0.15 2.01 16 5 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 6 O -0.56 -10.44 12.17 -148.98 -1.81 -12.25 16 7 C -0.18 -4.18 7.36 31.12 0.23 -3.95 16 8 C 0.12 3.59 3.63 45.52 0.17 3.76 16 9 H 0.08 2.93 7.42 -2.39 -0.02 2.91 16 10 N -0.71 -23.86 5.18 -443.08 -2.30 -26.16 16 11 C 0.57 25.00 7.76 86.73 0.67 25.67 16 12 O -0.61 -30.72 15.92 -3.99 -0.06 -30.78 16 13 C -0.30 -13.81 5.89 -19.93 -0.12 -13.92 16 14 C -0.05 -2.32 9.47 22.25 0.21 -2.10 16 15 C -0.20 -9.67 8.64 22.47 0.19 -9.48 16 16 C 0.10 5.33 5.58 -21.28 -0.12 5.21 16 17 C -0.47 -23.93 9.04 23.46 0.21 -23.72 16 18 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 19 C 0.04 1.78 5.14 85.35 0.44 2.22 16 20 N -0.80 -37.61 10.95 21.87 0.24 -37.37 16 21 Si 0.99 34.51 29.60 68.60 2.03 36.54 16 22 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 23 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 24 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 25 C -0.25 -12.77 9.73 22.47 0.22 -12.55 16 26 C -0.03 -1.69 9.52 22.25 0.21 -1.48 16 27 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.35 7.07 -2.38 -0.02 1.34 16 30 H 0.07 1.09 7.32 -2.39 -0.02 1.07 16 31 H 0.06 1.14 7.29 -2.39 -0.02 1.12 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.40 3.67 9.12 -74.05 -0.68 3.00 16 34 H 0.10 2.12 7.63 -2.39 -0.02 2.10 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.41 11.77 4.74 -92.71 -0.44 11.33 16 37 H 0.12 4.37 6.37 -2.91 -0.02 4.35 16 38 H 0.12 5.73 6.15 -2.91 -0.02 5.72 16 39 H 0.30 12.42 8.29 -92.71 -0.77 11.66 16 40 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 41 H 0.10 4.83 7.63 -2.91 -0.02 4.81 16 Total: -1.00 -65.31 335.56 1.66 -63.66 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -0.05 Total: 40.39 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 3.61 Total: -34.02 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -2.06 Total: -63.53 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.88 Total: -43.03 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Total: -65.31 1.66 -63.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275317873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.978 kcal (2) G-P(sol) polarization free energy of solvation -65.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds