Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48504 * 109.47237 * 269.99921 * 3 2 1 5 5 H 1.48501 * 109.47355 * 30.00128 * 3 2 1 6 6 H 1.48498 * 109.47288 * 150.00070 * 3 2 1 7 7 C 1.37877 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00242 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00019 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47410 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00039 * 274.88401 * 10 9 7 12 12 C 1.50702 * 109.47064 * 269.99868 * 11 10 9 13 13 C 1.34516 * 125.79074 * 89.99794 * 12 11 10 14 14 C 1.41383 * 106.84086 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.83913 * 0.02562 * 14 13 12 16 16 O 1.34302 * 108.42298 * 359.73499 * 15 14 13 17 17 C 1.34775 * 120.00121 * 94.88161 * 10 9 7 18 18 O 1.21610 * 120.00187 * 185.32824 * 17 10 9 19 19 C 1.47103 * 119.99941 * 5.32368 * 17 10 9 20 20 C 1.31560 * 118.10221 * 75.42811 * 19 17 10 21 21 C 1.50099 * 123.78856 * 180.44186 * 20 19 17 22 22 C 1.53008 * 110.13569 * 342.83438 * 21 20 19 23 23 C 1.53056 * 108.45591 * 49.72719 * 22 21 20 24 24 C 1.50093 * 118.10789 * 255.45128 * 19 17 10 25 25 H 0.97000 * 120.00201 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47331 * 59.99386 * 9 7 2 27 27 H 1.08998 * 109.47110 * 299.99882 * 9 7 2 28 28 H 1.08997 * 109.47107 * 29.99445 * 11 10 9 29 29 H 1.08998 * 109.47181 * 149.99936 * 11 10 9 30 30 H 1.07997 * 126.57823 * 0.03591 * 13 12 11 31 31 H 1.07994 * 126.58117 * 179.97438 * 14 13 12 32 32 H 1.08000 * 125.78919 * 180.02562 * 15 14 13 33 33 H 1.07995 * 118.10330 * 0.46643 * 20 19 17 34 34 H 1.09003 * 109.35720 * 103.03734 * 21 20 19 35 35 H 1.08995 * 109.35880 * 222.62846 * 21 20 19 36 36 H 1.09001 * 109.62689 * 169.45630 * 22 21 20 37 37 H 1.09000 * 109.63094 * 290.03841 * 22 21 20 38 38 H 1.09003 * 109.47097 * 172.21032 * 23 22 21 39 39 H 1.09000 * 109.64073 * 51.71969 * 23 22 21 40 40 H 1.09007 * 109.35780 * 283.01128 * 24 19 17 41 41 H 1.09003 * 109.36050 * 42.73699 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.1417 -3.3022 1.2639 12 6 5.5250 -3.0795 1.8189 13 6 5.8881 -2.0880 2.6522 14 6 7.2667 -2.2584 2.9155 15 6 7.6637 -3.3436 2.2268 16 8 6.6034 -3.8400 1.5688 17 6 4.3186 -3.1773 -1.1630 18 8 4.6310 -4.3525 -1.1738 19 6 4.2885 -2.4127 -2.4194 20 6 5.2690 -1.5676 -2.6542 21 6 5.3608 -0.7173 -3.8877 22 6 4.4360 -1.2665 -4.9760 23 6 3.0507 -1.4928 -4.3658 24 6 3.1407 -2.6415 -3.3591 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.8751 -0.6797 -0.8894 28 1 3.4015 -2.9391 1.9769 29 1 3.9870 -4.3670 1.0900 30 1 5.2491 -1.3110 3.0450 31 1 7.8830 -1.6362 3.5474 32 1 8.6643 -3.7497 2.2099 33 1 6.0534 -1.4809 -1.9169 34 1 5.0669 0.3040 -3.6452 35 1 6.3881 -0.7187 -4.2519 36 1 4.3645 -0.5480 -5.7925 37 1 4.8307 -2.2113 -5.3494 38 1 2.3442 -1.7516 -5.1545 39 1 2.7213 -0.5861 -3.8583 40 1 3.2927 -3.5793 -3.8936 41 1 2.2129 -2.6965 -2.7896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275853553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = -14.091414 kcal Electronic energy + Delta-G solvation = -23718.494995 eV Core-core repulsion = 20372.039464 eV Total energy + Delta-G solvation = -3346.455532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.27838 -39.64227 -37.37280 -35.28145 -32.83086 -32.54288 -31.48070 -30.44554 -30.01286 -27.92630 -25.72336 -23.25733 -22.79805 -22.08106 -21.41394 -20.49898 -19.33377 -17.43087 -17.14909 -16.83867 -16.49543 -16.06779 -15.42836 -14.76268 -14.57721 -14.21235 -14.09529 -13.44429 -13.41907 -13.05401 -12.71114 -12.58074 -12.53851 -12.33817 -12.16993 -12.09747 -12.02920 -11.80176 -11.43815 -10.98288 -10.74121 -10.56215 -10.50885 -10.33322 -10.14561 -9.71494 -9.64819 -9.18557 -8.77153 -8.45931 -8.26801 -7.92448 -6.22871 -4.23896 1.91093 2.31187 2.82066 3.10997 3.16005 3.24366 3.25941 3.39357 3.94768 4.25585 4.89963 4.99929 5.02053 5.08554 5.17502 5.24660 5.26680 5.41371 5.59200 5.62103 5.71064 5.81952 5.88005 5.99966 6.01211 6.01640 6.13278 6.17383 6.24224 6.32928 6.36348 6.39422 6.45739 6.64206 6.67670 6.73422 6.81765 7.11535 7.22576 7.41936 7.43014 8.00891 8.36727 8.74023 8.84145 9.36630 10.89625 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.007552 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.551104 B = 3706.494260 C = 5048.074618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.866 3.134 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.206 3.794 10 N -0.582 5.582 11 C 0.193 3.807 12 C -0.015 4.015 13 C -0.204 4.204 14 C -0.217 4.217 15 C -0.051 4.051 16 O -0.168 6.168 17 C 0.556 3.444 18 O -0.557 6.557 19 C -0.114 4.114 20 C -0.136 4.136 21 C -0.085 4.085 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.071 4.071 25 H 0.266 0.734 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.197 0.803 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.464 -0.871 -2.152 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.124 4.124 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.097 0.903 9 C 0.085 3.915 10 N -0.311 5.311 11 C 0.070 3.930 12 C -0.067 4.067 13 C -0.224 4.224 14 C -0.236 4.236 15 C -0.119 4.119 16 O -0.063 6.063 17 C 0.344 3.656 18 O -0.437 6.437 19 C -0.117 4.117 20 C -0.155 4.155 21 C -0.122 4.122 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.108 4.108 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.112 0.888 30 H 0.166 0.834 31 H 0.162 0.838 32 H 0.214 0.786 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.429 -1.606 -2.328 11.773 hybrid contribution 0.523 1.336 0.424 1.496 sum 11.952 -0.270 -1.904 12.106 Atomic orbital electron populations 1.69880 1.06144 1.27144 1.49587 1.24804 0.94649 0.98686 0.94252 0.86998 0.80542 0.84181 0.79040 1.19743 1.20907 1.18863 1.21318 0.88831 0.95029 1.52402 0.90285 1.19916 0.95952 0.77534 0.98052 1.47980 1.62823 1.16265 1.04080 1.19736 0.87095 0.99384 0.86792 1.23265 0.89793 0.93296 1.00367 1.21677 0.95994 1.01406 1.03320 1.21789 0.95972 1.00482 1.05338 1.23980 0.91861 0.97689 0.98415 1.84111 1.16773 1.48077 1.57314 1.18739 0.75911 0.86608 0.84322 1.90728 1.49703 1.16014 1.87239 1.20641 0.97868 0.97959 0.95258 1.22305 0.98065 0.96370 0.98810 1.20412 0.99790 0.98710 0.93256 1.21559 0.95907 1.00947 0.97318 1.21517 0.96500 0.99381 0.98080 1.20249 0.96610 0.98436 0.95545 0.92380 0.95091 0.94263 0.86532 0.88823 0.83378 0.83822 0.78631 0.88050 0.90532 0.91247 0.91883 0.91864 0.91647 0.90949 0.90927 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 19.66 27.47 -169.99 -4.67 14.99 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 7 C -0.54 -13.87 9.94 -34.44 -0.34 -14.21 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.21 4.58 4.17 -5.19 -0.02 4.56 16 10 N -0.58 -12.18 2.44 -177.84 -0.43 -12.62 16 11 C 0.19 3.63 6.00 -5.19 -0.03 3.60 16 12 C -0.02 -0.27 6.90 -35.62 -0.25 -0.52 16 13 C -0.20 -3.30 10.81 -39.70 -0.43 -3.73 16 14 C -0.22 -3.03 10.91 -39.70 -0.43 -3.46 16 15 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 16 O -0.17 -2.97 10.65 5.71 0.06 -2.91 16 17 C 0.56 11.91 6.80 -12.67 -0.09 11.82 16 18 O -0.56 -13.13 16.66 5.27 0.09 -13.04 16 19 C -0.11 -2.17 4.19 -103.17 -0.43 -2.60 16 20 C -0.14 -2.30 8.24 -36.45 -0.30 -2.60 16 21 C -0.08 -1.15 6.11 -28.17 -0.17 -1.32 16 22 C -0.12 -1.53 5.99 -26.70 -0.16 -1.69 16 23 C -0.12 -1.75 5.97 -26.70 -0.16 -1.91 16 24 C -0.07 -1.24 5.80 -28.17 -0.16 -1.40 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.68 7.17 -51.93 -0.37 0.31 16 27 H 0.04 0.87 5.14 -51.93 -0.27 0.60 16 28 H 0.12 2.05 8.07 -51.93 -0.42 1.64 16 29 H 0.09 1.77 7.35 -51.93 -0.38 1.39 16 30 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.10 1.72 7.95 -52.49 -0.42 1.31 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -30.83 342.62 -7.83 -38.66 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.10 Total: 6.15 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.72 Total: -11.81 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.34 Total: -37.20 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.15 Total: -15.95 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.83 -7.83 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275853553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.567 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds