Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48504 * 109.47237 * 269.99921 * 3 2 1 5 5 H 1.48501 * 109.47355 * 30.00128 * 3 2 1 6 6 H 1.48498 * 109.47288 * 150.00070 * 3 2 1 7 7 C 1.37877 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00242 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00019 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47410 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00039 * 274.88401 * 10 9 7 12 12 C 1.50702 * 109.47064 * 269.99868 * 11 10 9 13 13 C 1.34516 * 125.79074 * 89.99794 * 12 11 10 14 14 C 1.41383 * 106.84086 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.83913 * 0.02562 * 14 13 12 16 16 O 1.34302 * 108.42298 * 359.73499 * 15 14 13 17 17 C 1.34775 * 120.00121 * 94.88161 * 10 9 7 18 18 O 1.21610 * 120.00187 * 185.32824 * 17 10 9 19 19 C 1.47103 * 119.99941 * 5.32368 * 17 10 9 20 20 C 1.31560 * 118.10221 * 75.42811 * 19 17 10 21 21 C 1.50099 * 123.78856 * 180.44186 * 20 19 17 22 22 C 1.53008 * 110.13569 * 342.83438 * 21 20 19 23 23 C 1.53056 * 108.45591 * 49.72719 * 22 21 20 24 24 C 1.50093 * 118.10789 * 255.45128 * 19 17 10 25 25 H 0.97000 * 120.00201 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47331 * 59.99386 * 9 7 2 27 27 H 1.08998 * 109.47110 * 299.99882 * 9 7 2 28 28 H 1.08997 * 109.47107 * 29.99445 * 11 10 9 29 29 H 1.08998 * 109.47181 * 149.99936 * 11 10 9 30 30 H 1.07997 * 126.57823 * 0.03591 * 13 12 11 31 31 H 1.07994 * 126.58117 * 179.97438 * 14 13 12 32 32 H 1.08000 * 125.78919 * 180.02562 * 15 14 13 33 33 H 1.07995 * 118.10330 * 0.46643 * 20 19 17 34 34 H 1.09003 * 109.35720 * 103.03734 * 21 20 19 35 35 H 1.08995 * 109.35880 * 222.62846 * 21 20 19 36 36 H 1.09001 * 109.62689 * 169.45630 * 22 21 20 37 37 H 1.09000 * 109.63094 * 290.03841 * 22 21 20 38 38 H 1.09003 * 109.47097 * 172.21032 * 23 22 21 39 39 H 1.09000 * 109.64073 * 51.71969 * 23 22 21 40 40 H 1.09007 * 109.35780 * 283.01128 * 24 19 17 41 41 H 1.09003 * 109.36050 * 42.73699 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.1417 -3.3022 1.2639 12 6 5.5250 -3.0795 1.8189 13 6 5.8881 -2.0880 2.6522 14 6 7.2667 -2.2584 2.9155 15 6 7.6637 -3.3436 2.2268 16 8 6.6034 -3.8400 1.5688 17 6 4.3186 -3.1773 -1.1630 18 8 4.6310 -4.3525 -1.1738 19 6 4.2885 -2.4127 -2.4194 20 6 5.2690 -1.5676 -2.6542 21 6 5.3608 -0.7173 -3.8877 22 6 4.4360 -1.2665 -4.9760 23 6 3.0507 -1.4928 -4.3658 24 6 3.1407 -2.6415 -3.3591 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.8751 -0.6797 -0.8894 28 1 3.4015 -2.9391 1.9769 29 1 3.9870 -4.3670 1.0900 30 1 5.2491 -1.3110 3.0450 31 1 7.8830 -1.6362 3.5474 32 1 8.6643 -3.7497 2.2099 33 1 6.0534 -1.4809 -1.9169 34 1 5.0669 0.3040 -3.6452 35 1 6.3881 -0.7187 -4.2519 36 1 4.3645 -0.5480 -5.7925 37 1 4.8307 -2.2113 -5.3494 38 1 2.3442 -1.7516 -5.1545 39 1 2.7213 -0.5861 -3.8583 40 1 3.2927 -3.5793 -3.8936 41 1 2.2129 -2.6965 -2.7896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275853553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = -31.298576 kcal Electronic energy + Delta-G solvation = -23719.241154 eV Core-core repulsion = 20372.039464 eV Total energy + Delta-G solvation = -3347.201690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.51157 -41.21792 -38.70067 -37.02060 -34.67678 -33.92669 -32.82372 -31.69825 -31.40559 -29.71938 -27.13087 -24.82576 -24.26639 -23.47723 -22.63694 -21.75352 -20.74392 -19.13719 -18.76103 -18.26367 -18.00445 -17.58750 -16.81419 -16.34530 -16.07866 -15.76626 -15.37898 -14.96064 -14.62834 -14.49082 -14.38344 -14.00998 -13.75462 -13.68500 -13.58304 -13.53321 -13.31424 -13.21511 -13.12614 -12.60867 -12.47885 -12.15654 -11.85021 -11.70404 -11.64053 -11.32808 -10.89734 -10.80329 -10.71080 -9.88682 -9.68609 -9.45222 -8.29489 -6.36360 0.64310 0.93714 1.38324 1.39766 1.48848 1.53474 1.65198 2.10881 2.33748 2.41769 3.04402 3.49361 3.78458 3.79728 4.02344 4.06994 4.12968 4.21714 4.32372 4.35470 4.41475 4.50147 4.60531 4.61988 4.69692 4.80189 4.90143 4.93406 4.99539 5.01102 5.06371 5.13019 5.15166 5.28009 5.42097 5.47047 5.48991 5.55934 5.60754 5.77961 6.11959 6.22020 6.48377 6.66831 7.08189 7.29195 8.86629 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.007552 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.551104 B = 3706.494260 C = 5048.074618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.027 3.973 3 Si 0.931 3.069 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.242 1.242 7 C -0.536 4.536 8 H 0.031 0.969 9 C 0.221 3.779 10 N -0.585 5.585 11 C 0.192 3.808 12 C -0.047 4.047 13 C -0.200 4.200 14 C -0.220 4.220 15 C -0.042 4.042 16 O -0.194 6.194 17 C 0.548 3.452 18 O -0.589 6.589 19 C -0.151 4.151 20 C -0.114 4.114 21 C -0.087 4.087 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.067 4.067 25 H 0.268 0.732 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.177 0.823 32 H 0.239 0.761 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.718 1.391 -2.814 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.173 4.173 3 Si 0.754 3.246 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.575 4.575 8 H 0.050 0.950 9 C 0.100 3.900 10 N -0.314 5.314 11 C 0.069 3.931 12 C -0.098 4.098 13 C -0.221 4.221 14 C -0.239 4.239 15 C -0.110 4.110 16 O -0.091 6.091 17 C 0.338 3.662 18 O -0.471 6.471 19 C -0.154 4.154 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.105 4.105 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.136 0.864 29 H 0.098 0.902 30 H 0.172 0.828 31 H 0.194 0.806 32 H 0.256 0.744 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.694 0.650 -2.977 15.006 hybrid contribution -0.473 0.523 0.699 0.993 sum 14.220 1.173 -2.278 14.449 Atomic orbital electron populations 1.70035 1.08209 1.28312 1.51241 1.25653 0.95355 1.02646 0.93614 0.85950 0.79852 0.78880 0.79947 1.18260 1.20921 1.16550 1.21390 0.90778 0.93325 1.51995 0.95047 1.19661 0.93257 0.78480 0.98594 1.48051 1.62465 1.15959 1.04956 1.19692 0.88857 0.98399 0.86168 1.22904 0.89474 0.94949 1.02479 1.21930 0.97441 1.00551 1.02132 1.22155 0.95027 1.00953 1.05718 1.24917 0.92323 0.97182 0.96553 1.84085 1.17642 1.48886 1.58463 1.19298 0.75102 0.86507 0.85258 1.90684 1.51262 1.17401 1.87760 1.20681 0.99852 1.00031 0.94859 1.22673 0.96270 0.94588 0.99813 1.20576 1.01864 0.98136 0.91777 1.21565 0.93777 1.02130 0.97658 1.21508 0.98849 0.97157 0.97633 1.20191 0.94421 1.00174 0.95665 0.92237 0.94085 0.93393 0.86380 0.90160 0.82790 0.80580 0.74444 0.88209 0.89560 0.88202 0.88973 0.91233 0.89939 0.92788 0.90408 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.23 13.96 21.45 0.30 -54.93 16 2 C 0.03 1.44 5.47 84.66 0.46 1.90 16 3 Si 0.93 39.71 27.47 68.60 1.88 41.60 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.24 -9.41 6.54 99.48 0.65 -8.76 16 7 C -0.54 -28.78 9.94 25.60 0.25 -28.52 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 9 C 0.22 9.88 4.17 85.63 0.36 10.24 16 10 N -0.59 -25.40 2.44 -834.80 -2.04 -27.43 16 11 C 0.19 7.57 6.00 85.63 0.51 8.08 16 12 C -0.05 -1.68 6.90 24.83 0.17 -1.51 16 13 C -0.20 -6.19 10.81 22.19 0.24 -5.95 16 14 C -0.22 -5.46 10.91 22.19 0.24 -5.22 16 15 C -0.04 -1.06 12.09 66.97 0.81 -0.25 16 16 O -0.19 -6.78 10.65 -2.50 -0.03 -6.81 16 17 C 0.55 24.41 6.80 86.57 0.59 25.00 16 18 O -0.59 -29.09 16.66 -4.06 -0.07 -29.16 16 19 C -0.15 -5.79 4.19 -18.30 -0.08 -5.86 16 20 C -0.11 -3.65 8.24 24.93 0.21 -3.45 16 21 C -0.09 -2.04 6.11 29.66 0.18 -1.85 16 22 C -0.11 -2.53 5.99 30.62 0.18 -2.35 16 23 C -0.11 -3.26 5.97 30.62 0.18 -3.08 16 24 C -0.07 -2.40 5.80 29.66 0.17 -2.23 16 25 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.04 1.76 7.17 -2.38 -0.02 1.75 16 27 H 0.05 2.07 5.14 -2.39 -0.01 2.06 16 28 H 0.12 4.44 8.07 -2.39 -0.02 4.43 16 29 H 0.08 3.30 7.35 -2.39 -0.02 3.28 16 30 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.24 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.10 3.19 7.95 -2.91 -0.02 3.17 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.74 8.12 -2.39 -0.02 1.72 16 40 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -70.33 342.62 5.50 -64.83 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.96 Total: 26.97 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 4.49 Total: -15.07 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.74 Total: -82.37 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.09 Total: -35.97 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.88 Total: 41.60 kcal Total: -70.33 5.50 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275853553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.534 kcal (2) G-P(sol) polarization free energy of solvation -70.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds