Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38294 * 120.00571 * 2 1 4 4 C 1.37972 * 119.95712 * 179.88355 * 3 2 1 5 5 C 1.39141 * 120.21699 * 0.02562 * 4 3 2 6 6 C 1.38372 * 119.69290 * 0.16573 * 5 4 3 7 7 C 1.38094 * 120.01177 * 179.97438 * 2 1 3 8 8 C 1.50772 * 121.40828 * 179.52699 * 6 5 4 9 9 C 1.53060 * 109.69441 * 17.88881 * 8 6 5 10 10 C 1.53406 * 108.30084 * 311.80416 * 9 8 6 11 11 H 1.08997 * 109.67721 * 304.89460 * 10 9 8 12 12 C 1.50698 * 109.68068 * 184.38261 * 10 9 8 13 13 O 1.21284 * 119.99836 * 245.51324 * 12 10 9 14 14 N 1.34769 * 120.00085 * 65.51152 * 12 10 9 15 15 C 1.46503 * 120.00002 * 179.97438 * 14 12 10 16 16 H 1.09000 * 109.46809 * 35.00217 * 15 14 12 17 17 C 1.52994 * 109.47052 * 274.99713 * 15 14 12 18 18 C 1.50701 * 109.47172 * 154.99813 * 15 14 12 19 19 H 1.08001 * 120.00164 * 35.00280 * 18 15 14 20 20 C 1.37879 * 120.00448 * 215.00430 * 18 15 14 21 21 N 1.31509 * 120.00139 * 184.91481 * 20 18 15 22 22 Si 1.86798 * 119.99510 * 4.91299 * 20 18 15 23 23 H 1.48504 * 109.47146 * 84.83716 * 22 20 18 24 24 H 1.48498 * 109.47043 * 204.83677 * 22 20 18 25 25 H 1.48505 * 109.47431 * 324.83606 * 22 20 18 26 26 O 1.35843 * 118.50766 * 180.22824 * 5 4 3 27 27 H 1.09002 * 109.47226 * 270.02516 * 1 2 3 28 28 H 1.09001 * 109.47447 * 30.02395 * 1 2 3 29 29 H 1.09003 * 109.47342 * 150.02325 * 1 2 3 30 30 H 1.07999 * 120.02261 * 359.90268 * 3 2 1 31 31 H 1.08005 * 119.88845 * 180.02562 * 4 3 2 32 32 H 1.08003 * 119.84131 * 0.05379 * 7 2 1 33 33 H 1.09004 * 109.43795 * 137.97407 * 8 6 5 34 34 H 1.09001 * 109.43472 * 257.89728 * 8 6 5 35 35 H 1.09005 * 109.72793 * 192.07995 * 9 8 6 36 36 H 1.09000 * 109.66665 * 71.48531 * 9 8 6 37 37 H 0.97005 * 120.00415 * 359.97438 * 14 12 10 38 38 H 1.09005 * 109.47139 * 175.03383 * 17 15 14 39 39 H 1.08998 * 109.47637 * 295.03434 * 17 15 14 40 40 H 1.09002 * 109.47218 * 55.03831 * 17 15 14 41 41 H 0.97005 * 119.99632 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1976 0.0000 4 6 3.5783 1.1964 0.0024 5 6 4.2775 -0.0065 0.0043 6 6 3.5828 -1.2032 0.0003 7 6 2.1977 -1.1958 0.0005 8 6 4.3011 -2.5288 -0.0084 9 6 5.7539 -2.3311 0.4311 10 6 6.3399 -1.1533 -0.3581 11 1 6.2216 -1.3325 -1.4267 12 6 7.8021 -0.9987 -0.0282 13 8 8.1919 -0.0059 0.5491 14 7 8.6768 -1.9638 -0.3747 15 6 10.0984 -1.8132 -0.0544 16 1 10.2032 -1.2963 0.8995 17 6 10.7854 -1.0002 -1.1534 18 6 10.7392 -3.1740 0.0387 19 1 10.4114 -3.9710 -0.6123 20 6 11.7440 -3.4017 0.9550 21 7 12.3693 -4.5585 0.9713 22 14 12.2170 -2.0670 2.1732 23 1 11.3168 -2.1315 3.3525 24 1 13.6213 -2.2712 2.6107 25 1 12.0890 -0.7371 1.5249 26 8 5.6354 0.0328 0.0115 27 1 -0.3634 0.0005 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6590 2.1332 -0.0016 31 1 4.1173 2.1324 0.0028 32 1 1.6553 -2.1297 0.0001 33 1 3.8046 -3.2149 0.6777 34 1 4.2815 -2.9452 -1.0155 35 1 6.3274 -3.2344 0.2231 36 1 5.7877 -2.1114 1.4982 37 1 8.3650 -2.7581 -0.8361 38 1 11.8219 -0.8128 -0.8727 39 1 10.7577 -1.5580 -2.0894 40 1 10.2662 -0.0503 -1.2810 41 1 13.0765 -4.7185 1.6158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279620215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = -66.441528 kcal Electronic energy + Delta-G solvation = -22678.709207 eV Core-core repulsion = 19329.983604 eV Total energy + Delta-G solvation = -3348.725603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91528 -39.06141 -37.55311 -34.93280 -34.43679 -32.53960 -32.24688 -30.89960 -29.58345 -27.47313 -25.69159 -25.32017 -23.52489 -22.48508 -21.33783 -19.81791 -19.53659 -17.91700 -17.74214 -16.58718 -16.18523 -15.38506 -15.23068 -14.83854 -14.57940 -14.38185 -14.12292 -13.86908 -13.68228 -13.34611 -13.28161 -12.96220 -12.56309 -12.55382 -12.44929 -12.40336 -11.73306 -11.54108 -11.40255 -11.19269 -11.14317 -10.94168 -10.84239 -10.61064 -10.46894 -9.91040 -9.25775 -9.14583 -8.90293 -8.74742 -8.19123 -8.06055 -6.28206 -4.32435 1.20119 1.30388 2.90520 3.09129 3.25430 3.32135 3.39752 3.58472 4.07405 4.29058 4.45880 4.61570 4.63375 4.79261 4.83802 4.95863 5.06027 5.09230 5.22768 5.23659 5.37577 5.39285 5.46240 5.53816 5.66291 5.70755 5.85011 5.92071 6.01226 6.17218 6.29562 6.33880 6.47005 6.48480 6.63593 6.69365 6.88400 7.12541 7.29829 7.44525 7.48426 8.06171 8.47251 8.71364 8.85797 9.33494 10.83228 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.003428 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.010264 B = 8164.934554 C = 8470.397174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.126 4.126 3 C -0.089 4.089 4 C -0.144 4.144 5 C 0.134 3.866 6 C -0.159 4.159 7 C -0.084 4.084 8 C -0.076 4.076 9 C -0.150 4.150 10 C 0.074 3.926 11 H 0.094 0.906 12 C 0.509 3.491 13 O -0.535 6.535 14 N -0.698 5.698 15 C 0.232 3.768 16 H 0.051 0.949 17 C -0.149 4.149 18 C -0.531 4.531 19 H 0.080 0.920 20 C 0.082 3.918 21 N -0.887 5.887 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.260 1.260 26 O -0.288 6.288 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.394 0.606 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.029 0.971 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.449 5.369 -3.618 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.127 4.127 3 C -0.107 4.107 4 C -0.163 4.163 5 C 0.088 3.912 6 C -0.160 4.160 7 C -0.102 4.102 8 C -0.112 4.112 9 C -0.188 4.188 10 C 0.014 3.986 11 H 0.111 0.889 12 C 0.292 3.708 13 O -0.412 6.412 14 N -0.348 5.348 15 C 0.131 3.869 16 H 0.069 0.931 17 C -0.207 4.207 18 C -0.569 4.569 19 H 0.098 0.902 20 C -0.122 4.122 21 N -0.523 5.523 22 Si 0.700 3.300 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.184 1.184 26 O -0.200 6.200 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.227 0.773 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.840 6.120 -3.058 21.934 hybrid contribution 0.172 -0.031 0.418 0.453 sum -20.667 6.088 -2.641 21.707 Atomic orbital electron populations 1.20694 0.91199 1.02459 1.02025 1.19747 0.96039 0.93051 1.03822 1.20778 0.92923 0.97698 0.99274 1.20605 0.93767 0.96535 1.05376 1.18803 0.82471 0.93417 0.96519 1.19860 0.94460 0.94347 1.07316 1.20736 0.92485 0.97701 0.99315 1.20499 0.94228 0.93898 1.02619 1.22221 0.96328 0.98600 1.01669 1.22382 0.91470 0.84962 0.99770 0.88886 1.19888 0.86174 0.84384 0.80370 1.90689 1.79362 1.29743 1.41428 1.46574 1.09420 1.20369 1.58428 1.19172 0.75891 0.96975 0.94887 0.93116 1.22227 1.00262 0.98120 1.00139 1.20983 1.19455 0.95265 1.21194 0.90223 1.24933 0.95398 0.95386 0.96533 1.69876 1.23399 1.23023 1.36018 0.86908 0.77901 0.83073 0.82151 1.19788 1.21106 1.18417 1.86094 1.14892 1.35733 1.83313 0.91545 0.91783 0.91833 0.85591 0.85101 0.85938 0.89610 0.90108 0.88491 0.89747 0.77263 0.92757 0.93295 0.95147 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.13 -1.26 5.88 -104.66 -0.62 -1.87 16 3 C -0.09 -0.93 9.70 -39.66 -0.38 -1.31 16 4 C -0.14 -1.84 9.94 -39.34 -0.39 -2.23 16 5 C 0.13 1.92 6.47 -39.20 -0.25 1.67 16 6 C -0.16 -1.94 5.75 -104.44 -0.60 -2.54 16 7 C -0.08 -0.88 9.32 -39.53 -0.37 -1.25 16 8 C -0.08 -0.79 5.86 -27.82 -0.16 -0.95 16 9 C -0.15 -1.92 5.46 -26.49 -0.14 -2.06 16 10 C 0.07 1.14 3.21 -27.67 -0.09 1.05 16 11 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 12 C 0.51 10.01 7.15 -10.99 -0.08 9.93 16 13 O -0.54 -12.89 16.18 -14.21 -0.23 -13.12 16 14 N -0.70 -13.68 5.02 -54.93 -0.28 -13.96 16 15 C 0.23 5.46 2.22 -69.08 -0.15 5.31 16 16 H 0.05 1.31 4.73 -51.93 -0.25 1.07 16 17 C -0.15 -3.24 9.47 37.15 0.35 -2.89 16 18 C -0.53 -13.94 9.05 -34.44 -0.31 -14.25 16 19 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 20 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 21 N -0.89 -25.70 13.96 55.43 0.77 -24.93 16 22 Si 0.87 21.42 26.99 -169.99 -4.59 16.83 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.26 -6.31 6.82 56.52 0.39 -5.92 16 26 O -0.29 -4.90 9.47 -39.01 -0.37 -5.27 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.11 7.91 -51.93 -0.41 0.70 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.39 6.56 8.39 -40.82 -0.34 6.21 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -32.35 340.46 -8.56 -40.91 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.06 Total: 4.02 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.94 Total: -9.62 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.50 Total: -38.89 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.60 Total: -18.38 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.59 Total: 16.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.35 -8.56 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279620215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.536 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds