Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38294 * 120.00571 * 2 1 4 4 C 1.37972 * 119.95712 * 179.88355 * 3 2 1 5 5 C 1.39141 * 120.21699 * 0.02562 * 4 3 2 6 6 C 1.38372 * 119.69290 * 0.16573 * 5 4 3 7 7 C 1.38094 * 120.01177 * 179.97438 * 2 1 3 8 8 C 1.50772 * 121.40828 * 179.52699 * 6 5 4 9 9 C 1.53060 * 109.69441 * 17.88881 * 8 6 5 10 10 C 1.53406 * 108.30084 * 311.80416 * 9 8 6 11 11 H 1.08997 * 109.67721 * 304.89460 * 10 9 8 12 12 C 1.50698 * 109.68068 * 184.38261 * 10 9 8 13 13 O 1.21284 * 119.99836 * 245.51324 * 12 10 9 14 14 N 1.34769 * 120.00085 * 65.51152 * 12 10 9 15 15 C 1.46503 * 120.00002 * 179.97438 * 14 12 10 16 16 H 1.09000 * 109.46809 * 35.00217 * 15 14 12 17 17 C 1.52994 * 109.47052 * 274.99713 * 15 14 12 18 18 C 1.50701 * 109.47172 * 154.99813 * 15 14 12 19 19 H 1.08001 * 120.00164 * 35.00280 * 18 15 14 20 20 C 1.37879 * 120.00448 * 215.00430 * 18 15 14 21 21 N 1.31509 * 120.00139 * 184.91481 * 20 18 15 22 22 Si 1.86798 * 119.99510 * 4.91299 * 20 18 15 23 23 H 1.48504 * 109.47146 * 84.83716 * 22 20 18 24 24 H 1.48498 * 109.47043 * 204.83677 * 22 20 18 25 25 H 1.48505 * 109.47431 * 324.83606 * 22 20 18 26 26 O 1.35843 * 118.50766 * 180.22824 * 5 4 3 27 27 H 1.09002 * 109.47226 * 270.02516 * 1 2 3 28 28 H 1.09001 * 109.47447 * 30.02395 * 1 2 3 29 29 H 1.09003 * 109.47342 * 150.02325 * 1 2 3 30 30 H 1.07999 * 120.02261 * 359.90268 * 3 2 1 31 31 H 1.08005 * 119.88845 * 180.02562 * 4 3 2 32 32 H 1.08003 * 119.84131 * 0.05379 * 7 2 1 33 33 H 1.09004 * 109.43795 * 137.97407 * 8 6 5 34 34 H 1.09001 * 109.43472 * 257.89728 * 8 6 5 35 35 H 1.09005 * 109.72793 * 192.07995 * 9 8 6 36 36 H 1.09000 * 109.66665 * 71.48531 * 9 8 6 37 37 H 0.97005 * 120.00415 * 359.97438 * 14 12 10 38 38 H 1.09005 * 109.47139 * 175.03383 * 17 15 14 39 39 H 1.08998 * 109.47637 * 295.03434 * 17 15 14 40 40 H 1.09002 * 109.47218 * 55.03831 * 17 15 14 41 41 H 0.97005 * 119.99632 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1976 0.0000 4 6 3.5783 1.1964 0.0024 5 6 4.2775 -0.0065 0.0043 6 6 3.5828 -1.2032 0.0003 7 6 2.1977 -1.1958 0.0005 8 6 4.3011 -2.5288 -0.0084 9 6 5.7539 -2.3311 0.4311 10 6 6.3399 -1.1533 -0.3581 11 1 6.2216 -1.3325 -1.4267 12 6 7.8021 -0.9987 -0.0282 13 8 8.1919 -0.0059 0.5491 14 7 8.6768 -1.9638 -0.3747 15 6 10.0984 -1.8132 -0.0544 16 1 10.2032 -1.2963 0.8995 17 6 10.7854 -1.0002 -1.1534 18 6 10.7392 -3.1740 0.0387 19 1 10.4114 -3.9710 -0.6123 20 6 11.7440 -3.4017 0.9550 21 7 12.3693 -4.5585 0.9713 22 14 12.2170 -2.0670 2.1732 23 1 11.3168 -2.1315 3.3525 24 1 13.6213 -2.2712 2.6107 25 1 12.0890 -0.7371 1.5249 26 8 5.6354 0.0328 0.0115 27 1 -0.3634 0.0005 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6590 2.1332 -0.0016 31 1 4.1173 2.1324 0.0028 32 1 1.6553 -2.1297 0.0001 33 1 3.8046 -3.2149 0.6777 34 1 4.2815 -2.9452 -1.0155 35 1 6.3274 -3.2344 0.2231 36 1 5.7877 -2.1114 1.4982 37 1 8.3650 -2.7581 -0.8361 38 1 11.8219 -0.8128 -0.8727 39 1 10.7577 -1.5580 -2.0894 40 1 10.2662 -0.0503 -1.2810 41 1 13.0765 -4.7185 1.6158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279620215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = -86.091237 kcal Electronic energy + Delta-G solvation = -22679.561282 eV Core-core repulsion = 19329.983604 eV Total energy + Delta-G solvation = -3349.577678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99225 -40.48366 -38.63438 -36.74977 -35.44899 -34.39934 -33.24276 -32.14118 -30.98545 -28.40718 -27.35691 -26.58961 -24.48620 -23.43549 -22.89927 -21.45455 -20.59324 -19.49985 -18.92144 -18.13697 -17.40764 -17.10037 -16.47560 -15.92400 -15.88793 -15.55819 -15.33655 -14.92239 -14.77462 -14.62314 -14.53768 -14.31140 -14.17381 -13.86886 -13.43116 -13.30985 -13.14786 -13.05759 -12.82700 -12.58302 -12.48631 -12.27932 -12.04662 -11.89981 -11.88205 -11.41705 -11.26422 -10.88618 -10.70931 -9.93152 -9.73348 -8.97227 -8.41239 -6.47115 0.36181 0.42709 1.26588 1.32505 1.42659 1.54831 1.68373 2.24872 2.64895 2.79894 3.01651 3.48701 3.62283 3.72587 3.81834 3.88764 4.05310 4.21061 4.27101 4.40851 4.43910 4.53975 4.60476 4.69403 4.75648 4.79004 4.87536 4.92066 4.96480 5.02920 5.05570 5.14944 5.19625 5.32445 5.37029 5.41796 5.47348 5.64340 5.68873 5.89042 6.08633 6.43561 6.57648 6.78320 7.17614 7.32754 8.73301 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.003428 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.010264 B = 8164.934554 C = 8470.397174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.163 4.163 5 C 0.096 3.904 6 C -0.165 4.165 7 C -0.088 4.088 8 C -0.069 4.069 9 C -0.146 4.146 10 C 0.081 3.919 11 H 0.121 0.879 12 C 0.507 3.493 13 O -0.585 6.585 14 N -0.691 5.691 15 C 0.234 3.766 16 H 0.028 0.972 17 C -0.143 4.143 18 C -0.524 4.524 19 H 0.064 0.936 20 C 0.038 3.962 21 N -0.925 5.925 22 Si 0.920 3.080 23 H -0.276 1.276 24 H -0.276 1.276 25 H -0.259 1.259 26 O -0.322 6.322 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.151 0.849 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.410 0.590 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.255 5.048 -4.265 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.181 4.181 5 C 0.052 3.948 6 C -0.165 4.165 7 C -0.105 4.105 8 C -0.106 4.106 9 C -0.184 4.184 10 C 0.022 3.978 11 H 0.139 0.861 12 C 0.293 3.707 13 O -0.465 6.465 14 N -0.342 5.342 15 C 0.131 3.869 16 H 0.046 0.954 17 C -0.202 4.202 18 C -0.562 4.562 19 H 0.082 0.918 20 C -0.163 4.163 21 N -0.564 5.564 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.201 1.201 25 H -0.184 1.184 26 O -0.236 6.236 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.167 0.833 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.081 0.919 37 H 0.246 0.754 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.677 5.780 -3.726 24.655 hybrid contribution 0.907 0.102 0.583 1.082 sum -22.770 5.882 -3.144 23.727 Atomic orbital electron populations 1.20761 0.88775 1.03750 1.02958 1.20195 0.97813 0.92602 1.01744 1.21086 0.91998 0.99300 0.98529 1.20788 0.94962 0.96101 1.06286 1.19123 0.81426 0.94987 0.99302 1.20117 0.95393 0.94207 1.06828 1.21091 0.91839 0.99157 0.98462 1.20561 0.92101 0.93513 1.04422 1.22225 0.98377 0.97778 1.00025 1.22304 0.88178 0.85753 1.01575 0.86148 1.20616 0.88050 0.83138 0.78899 1.90658 1.80602 1.31672 1.43565 1.46233 1.08189 1.21299 1.58446 1.18939 0.77936 0.95358 0.94663 0.95422 1.22130 0.99771 0.98208 1.00047 1.21136 1.18964 0.95915 1.20161 0.91774 1.25522 0.95798 0.96847 0.98146 1.69955 1.24523 1.24622 1.37277 0.86154 0.77924 0.81071 0.80283 1.20150 1.20109 1.18360 1.86020 1.16702 1.36535 1.84337 0.90642 0.90671 0.90484 0.83267 0.85812 0.83178 0.87484 0.87789 0.87101 0.91861 0.75366 0.93212 0.91829 0.94708 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.23 0.71 -0.36 16 2 C -0.12 -2.09 5.88 -19.89 -0.12 -2.20 16 3 C -0.09 -1.76 9.70 22.22 0.22 -1.54 16 4 C -0.16 -4.15 9.94 22.42 0.22 -3.92 16 5 C 0.10 2.74 6.47 22.52 0.15 2.89 16 6 C -0.16 -3.69 5.75 -19.74 -0.11 -3.80 16 7 C -0.09 -1.55 9.32 22.30 0.21 -1.34 16 8 C -0.07 -1.25 5.86 29.89 0.18 -1.07 16 9 C -0.15 -3.53 5.46 30.75 0.17 -3.36 16 10 C 0.08 2.44 3.21 29.98 0.10 2.54 16 11 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 12 C 0.51 20.02 7.15 87.66 0.63 20.64 16 13 O -0.58 -28.86 16.18 15.86 0.26 -28.60 16 14 N -0.69 -26.79 5.02 -446.11 -2.24 -29.02 16 15 C 0.23 11.00 2.22 44.24 0.10 11.09 16 16 H 0.03 1.45 4.73 -2.39 -0.01 1.43 16 17 C -0.14 -6.13 9.47 71.98 0.68 -5.45 16 18 C -0.52 -27.54 9.05 25.60 0.23 -27.31 16 19 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 20 C 0.04 2.10 5.47 84.66 0.46 2.56 16 21 N -0.93 -54.07 13.96 21.45 0.30 -53.77 16 22 Si 0.92 44.49 26.99 68.60 1.85 46.34 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.26 -12.40 6.82 99.48 0.68 -11.72 16 26 O -0.32 -11.15 9.47 -72.89 -0.69 -11.84 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 29 H 0.08 0.60 8.09 -2.39 -0.02 0.59 16 30 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 2.31 7.91 -2.38 -0.02 2.29 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.41 13.18 8.39 -92.70 -0.78 12.40 16 38 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -71.44 340.46 3.52 -67.92 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.23 Total: 19.61 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 3.82 Total: -10.64 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.94 Total: -82.80 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.43 Total: -40.44 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.85 Total: 46.34 kcal Total: -71.44 3.52 -67.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279620215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.171 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds