Wall clock time and date at job start Tue Mar 31 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38292 * 120.00942 * 2 1 4 4 C 1.37974 * 119.95774 * 180.09261 * 3 2 1 5 5 C 1.39151 * 120.21756 * 359.95510 * 4 3 2 6 6 C 1.38373 * 119.68734 * 359.87705 * 5 4 3 7 7 C 1.38100 * 120.00984 * 179.97438 * 2 1 3 8 8 C 1.50866 * 121.41840 * 180.28029 * 6 5 4 9 9 C 1.53076 * 109.61997 * 342.23208 * 8 6 5 10 10 C 1.53405 * 108.31746 * 48.23066 * 9 8 6 11 11 H 1.09004 * 109.68891 * 54.96734 * 10 9 8 12 12 C 1.50706 * 109.68411 * 175.48663 * 10 9 8 13 13 O 1.21279 * 119.99998 * 114.99819 * 12 10 9 14 14 N 1.34779 * 119.99338 * 294.99919 * 12 10 9 15 15 C 1.46502 * 119.99601 * 179.97438 * 14 12 10 16 16 H 1.09007 * 109.47105 * 325.00273 * 15 14 12 17 17 C 1.53002 * 109.46892 * 85.00030 * 15 14 12 18 18 C 1.50696 * 109.47367 * 204.99959 * 15 14 12 19 19 H 1.08010 * 119.99854 * 0.02562 * 18 15 14 20 20 C 1.37872 * 120.00160 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00383 * 0.02562 * 20 18 15 22 22 Si 1.86806 * 120.00166 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46677 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47373 * 120.00037 * 22 20 18 25 25 H 1.48497 * 109.47017 * 240.00771 * 22 20 18 26 26 O 1.35839 * 118.49656 * 179.82409 * 5 4 3 27 27 H 1.08995 * 109.47167 * 270.02508 * 1 2 3 28 28 H 1.09002 * 109.46697 * 30.02730 * 1 2 3 29 29 H 1.08994 * 109.47128 * 150.02144 * 1 2 3 30 30 H 1.07994 * 120.02384 * 0.05777 * 3 2 1 31 31 H 1.08001 * 119.89115 * 179.97438 * 4 3 2 32 32 H 1.08008 * 119.84179 * 0.02562 * 7 2 1 33 33 H 1.09001 * 109.48632 * 222.17496 * 8 6 5 34 34 H 1.08999 * 109.43629 * 102.26422 * 8 6 5 35 35 H 1.09002 * 109.70398 * 288.50969 * 9 8 6 36 36 H 1.09000 * 109.70051 * 167.94763 * 9 8 6 37 37 H 0.96992 * 120.00259 * 359.97438 * 14 12 10 38 38 H 1.09004 * 109.46622 * 180.02562 * 17 15 14 39 39 H 1.09004 * 109.47427 * 299.99743 * 17 15 14 40 40 H 1.08997 * 109.46897 * 60.00254 * 17 15 14 41 41 H 0.97000 * 120.00568 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1975 0.0000 4 6 3.5784 1.1963 -0.0019 5 6 4.2776 -0.0068 -0.0029 6 6 3.5827 -1.2033 0.0006 7 6 2.1977 -1.1959 0.0005 8 6 4.3011 -2.5300 0.0059 9 6 5.7537 -2.3297 -0.4334 10 6 6.3394 -1.1542 0.3595 11 1 6.2197 -1.3358 1.4276 12 6 7.8023 -0.9997 0.0318 13 8 8.1948 -0.0015 -0.5342 14 7 8.6743 -1.9709 0.3679 15 6 10.0963 -1.8210 0.0489 16 1 10.2023 -1.2942 -0.8995 17 6 10.7858 -1.0215 1.1563 18 6 10.7333 -3.1825 -0.0587 19 1 10.1382 -4.0708 0.0947 20 6 12.0753 -3.2943 -0.3541 21 7 12.7998 -2.2129 -0.5414 22 14 12.8648 -4.9821 -0.4882 23 1 11.8419 -6.0284 -0.2348 24 1 13.4272 -5.1586 -1.8511 25 1 13.9527 -5.1008 0.5156 26 8 5.6354 0.0328 -0.0085 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6592 2.1331 0.0009 31 1 4.1175 2.1321 -0.0023 32 1 1.6552 -2.1298 0.0005 33 1 3.8052 -3.2148 -0.6821 34 1 4.2808 -2.9494 1.0118 35 1 5.7877 -2.1069 -1.4998 36 1 6.3275 -3.2335 -0.2284 37 1 8.3604 -2.7691 0.8209 38 1 11.8437 -0.9096 0.9186 39 1 10.3251 -0.0366 1.2341 40 1 10.6797 -1.5482 2.1046 41 1 13.7441 -2.2915 -0.7489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279620219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:56 Heat of formation + Delta-G solvation = -66.028727 kcal Electronic energy + Delta-G solvation = -22578.508079 eV Core-core repulsion = 19229.800377 eV Total energy + Delta-G solvation = -3348.707703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87391 -38.95233 -37.48425 -34.83647 -34.41068 -32.54655 -32.20146 -30.71612 -28.98343 -27.36189 -25.62415 -25.26830 -23.49840 -22.46134 -21.41518 -19.79512 -19.41626 -17.85803 -17.61512 -16.40958 -15.87770 -15.31052 -15.12395 -14.84028 -14.53551 -14.34383 -14.15715 -13.90601 -13.63320 -13.32777 -13.19819 -12.88022 -12.54055 -12.49165 -12.38555 -11.75549 -11.69620 -11.37274 -11.19044 -11.13111 -11.02079 -10.89565 -10.77267 -10.43384 -10.32903 -10.27224 -9.08771 -9.01876 -8.88134 -8.59443 -8.04155 -7.99075 -6.15780 -4.25557 1.22413 1.32870 2.97584 3.20753 3.21876 3.29712 3.32062 3.61185 4.13479 4.33531 4.47978 4.64678 4.66143 4.81318 4.89319 4.99408 5.08378 5.16584 5.24913 5.25656 5.39896 5.42243 5.49446 5.56203 5.67550 5.70897 5.86412 5.94057 6.02773 6.19707 6.36135 6.49108 6.71814 6.79182 6.93094 7.10743 7.37140 7.42405 7.55233 7.65533 7.87050 8.10654 8.56394 8.72997 9.01973 9.41904 10.90273 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037688 B = 0.003177 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.769925 B = 8811.542225 C = 9380.447846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.088 4.088 4 C -0.144 4.144 5 C 0.134 3.866 6 C -0.160 4.160 7 C -0.084 4.084 8 C -0.075 4.075 9 C -0.149 4.149 10 C 0.074 3.926 11 H 0.092 0.908 12 C 0.509 3.491 13 O -0.531 6.531 14 N -0.703 5.703 15 C 0.266 3.734 16 H 0.050 0.950 17 C -0.149 4.149 18 C -0.534 4.534 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.882 5.882 22 Si 0.903 3.097 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 O -0.287 6.287 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.389 0.611 38 H 0.091 0.909 39 H 0.015 0.985 40 H 0.027 0.973 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.693 0.150 3.202 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.163 4.163 5 C 0.089 3.911 6 C -0.161 4.161 7 C -0.102 4.102 8 C -0.112 4.112 9 C -0.187 4.187 10 C 0.014 3.986 11 H 0.110 0.890 12 C 0.292 3.708 13 O -0.407 6.407 14 N -0.352 5.352 15 C 0.165 3.835 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.572 4.572 19 H 0.081 0.919 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 O -0.199 6.199 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.222 0.778 38 H 0.110 0.890 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.040 1.091 2.687 21.239 hybrid contribution 0.326 -1.451 0.228 1.504 sum -20.713 -0.359 2.915 20.921 Atomic orbital electron populations 1.20688 0.91222 1.02473 1.01966 1.19742 0.96018 0.93057 1.03921 1.20777 0.92928 0.97690 0.99238 1.20616 0.93765 0.96576 1.05330 1.18816 0.82544 0.93406 0.96372 1.19868 0.94446 0.94333 1.07449 1.20726 0.92479 0.97670 0.99366 1.20515 0.94264 0.93894 1.02539 1.22211 0.96248 0.98585 1.01674 1.22402 0.91743 0.84823 0.99665 0.89019 1.19761 0.85978 0.84587 0.80491 1.90701 1.79126 1.29357 1.41519 1.46430 1.10273 1.19648 1.58886 1.18800 0.73031 0.96406 0.95280 0.93224 1.22097 1.04094 0.96485 0.98046 1.21224 0.94577 0.91458 1.49979 0.91945 1.24894 0.96991 0.97151 0.94694 1.69910 1.07556 1.27627 1.46876 0.86378 0.79278 0.83547 0.77795 1.19721 1.20854 1.20853 1.86107 1.14821 1.35690 1.83299 0.91587 0.91780 0.91853 0.85592 0.85051 0.85988 0.89686 0.90181 0.89739 0.88733 0.77837 0.89011 0.96550 0.95353 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.13 -1.28 5.88 -104.65 -0.62 -1.90 16 3 C -0.09 -0.94 9.70 -39.66 -0.38 -1.33 16 4 C -0.14 -1.88 9.94 -39.34 -0.39 -2.27 16 5 C 0.13 1.98 6.47 -39.19 -0.25 1.72 16 6 C -0.16 -1.98 5.75 -104.39 -0.60 -2.58 16 7 C -0.08 -0.89 9.32 -39.53 -0.37 -1.26 16 8 C -0.08 -0.79 5.87 -27.76 -0.16 -0.95 16 9 C -0.15 -1.91 5.45 -26.48 -0.14 -2.06 16 10 C 0.07 1.16 3.21 -27.67 -0.09 1.08 16 11 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 12 C 0.51 10.44 7.16 -10.98 -0.08 10.36 16 13 O -0.53 -13.42 16.18 -14.20 -0.23 -13.65 16 14 N -0.70 -14.36 5.00 -54.93 -0.27 -14.63 16 15 C 0.27 6.71 2.56 -69.08 -0.18 6.54 16 16 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 17 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 18 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 19 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -24.69 11.32 55.43 0.63 -24.07 16 22 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 O -0.29 -5.02 9.47 -38.99 -0.37 -5.39 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.08 -51.93 -0.42 -0.02 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 37 H 0.39 6.64 8.29 -40.82 -0.34 6.30 16 38 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -31.85 340.61 -9.15 -41.00 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.06 Total: 5.19 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.96 Total: -8.91 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.35 Total: -38.70 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.60 Total: -19.04 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.85 -9.15 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279620219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.031 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds