Wall clock time and date at job start Tue Mar 31 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38292 * 120.00942 * 2 1 4 4 C 1.37974 * 119.95774 * 180.09261 * 3 2 1 5 5 C 1.39151 * 120.21756 * 359.95510 * 4 3 2 6 6 C 1.38373 * 119.68734 * 359.87705 * 5 4 3 7 7 C 1.38100 * 120.00984 * 179.97438 * 2 1 3 8 8 C 1.50866 * 121.41840 * 180.28029 * 6 5 4 9 9 C 1.53076 * 109.61997 * 342.23208 * 8 6 5 10 10 C 1.53405 * 108.31746 * 48.23066 * 9 8 6 11 11 H 1.09004 * 109.68891 * 54.96734 * 10 9 8 12 12 C 1.50706 * 109.68411 * 175.48663 * 10 9 8 13 13 O 1.21279 * 119.99998 * 114.99819 * 12 10 9 14 14 N 1.34779 * 119.99338 * 294.99919 * 12 10 9 15 15 C 1.46502 * 119.99601 * 179.97438 * 14 12 10 16 16 H 1.09007 * 109.47105 * 325.00273 * 15 14 12 17 17 C 1.53002 * 109.46892 * 85.00030 * 15 14 12 18 18 C 1.50696 * 109.47367 * 204.99959 * 15 14 12 19 19 H 1.08010 * 119.99854 * 0.02562 * 18 15 14 20 20 C 1.37872 * 120.00160 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00383 * 0.02562 * 20 18 15 22 22 Si 1.86806 * 120.00166 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46677 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47373 * 120.00037 * 22 20 18 25 25 H 1.48497 * 109.47017 * 240.00771 * 22 20 18 26 26 O 1.35839 * 118.49656 * 179.82409 * 5 4 3 27 27 H 1.08995 * 109.47167 * 270.02508 * 1 2 3 28 28 H 1.09002 * 109.46697 * 30.02730 * 1 2 3 29 29 H 1.08994 * 109.47128 * 150.02144 * 1 2 3 30 30 H 1.07994 * 120.02384 * 0.05777 * 3 2 1 31 31 H 1.08001 * 119.89115 * 179.97438 * 4 3 2 32 32 H 1.08008 * 119.84179 * 0.02562 * 7 2 1 33 33 H 1.09001 * 109.48632 * 222.17496 * 8 6 5 34 34 H 1.08999 * 109.43629 * 102.26422 * 8 6 5 35 35 H 1.09002 * 109.70398 * 288.50969 * 9 8 6 36 36 H 1.09000 * 109.70051 * 167.94763 * 9 8 6 37 37 H 0.96992 * 120.00259 * 359.97438 * 14 12 10 38 38 H 1.09004 * 109.46622 * 180.02562 * 17 15 14 39 39 H 1.09004 * 109.47427 * 299.99743 * 17 15 14 40 40 H 1.08997 * 109.46897 * 60.00254 * 17 15 14 41 41 H 0.97000 * 120.00568 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1975 0.0000 4 6 3.5784 1.1963 -0.0019 5 6 4.2776 -0.0068 -0.0029 6 6 3.5827 -1.2033 0.0006 7 6 2.1977 -1.1959 0.0005 8 6 4.3011 -2.5300 0.0059 9 6 5.7537 -2.3297 -0.4334 10 6 6.3394 -1.1542 0.3595 11 1 6.2197 -1.3358 1.4276 12 6 7.8023 -0.9997 0.0318 13 8 8.1948 -0.0015 -0.5342 14 7 8.6743 -1.9709 0.3679 15 6 10.0963 -1.8210 0.0489 16 1 10.2023 -1.2942 -0.8995 17 6 10.7858 -1.0215 1.1563 18 6 10.7333 -3.1825 -0.0587 19 1 10.1382 -4.0708 0.0947 20 6 12.0753 -3.2943 -0.3541 21 7 12.7998 -2.2129 -0.5414 22 14 12.8648 -4.9821 -0.4882 23 1 11.8419 -6.0284 -0.2348 24 1 13.4272 -5.1586 -1.8511 25 1 13.9527 -5.1008 0.5156 26 8 5.6354 0.0328 -0.0085 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6592 2.1331 0.0009 31 1 4.1175 2.1321 -0.0023 32 1 1.6552 -2.1298 0.0005 33 1 3.8052 -3.2148 -0.6821 34 1 4.2808 -2.9494 1.0118 35 1 5.7877 -2.1069 -1.4998 36 1 6.3275 -3.2335 -0.2284 37 1 8.3604 -2.7691 0.8209 38 1 11.8437 -0.9096 0.9186 39 1 10.3251 -0.0366 1.2341 40 1 10.6797 -1.5482 2.1046 41 1 13.7441 -2.2915 -0.7489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279620219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:56 Heat of formation + Delta-G solvation = -85.013782 kcal Electronic energy + Delta-G solvation = -22579.331333 eV Core-core repulsion = 19229.800377 eV Total energy + Delta-G solvation = -3349.530956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.97922 -40.43573 -38.61841 -36.74594 -35.45178 -34.33496 -33.17864 -31.86980 -30.63118 -28.36121 -27.36285 -26.57449 -24.48145 -23.48091 -23.03802 -21.41373 -20.57042 -19.25930 -18.92431 -17.74544 -17.39460 -17.06931 -16.50164 -15.93558 -15.84480 -15.56272 -15.33283 -14.90098 -14.72545 -14.58911 -14.43762 -14.17739 -13.91015 -13.66889 -13.42753 -13.14592 -13.00489 -12.90210 -12.77425 -12.56368 -12.31546 -12.26457 -12.11893 -12.03935 -11.87158 -11.40715 -11.12049 -10.73179 -10.59457 -9.86602 -9.72979 -8.96744 -8.18511 -6.36533 0.36598 0.43013 1.45494 1.45980 1.58139 1.59101 1.72801 2.40388 2.68826 2.85401 3.12527 3.49138 3.63962 3.73483 3.82544 3.89634 4.05690 4.22609 4.27700 4.42271 4.54548 4.61019 4.71972 4.75844 4.86922 4.89097 4.92339 4.98057 5.03541 5.05586 5.15632 5.20020 5.37315 5.38258 5.47705 5.55482 5.63659 5.69102 5.83767 5.91973 6.05887 6.44579 6.70171 6.84764 7.28499 7.44279 8.88394 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037688 B = 0.003177 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.769925 B = 8811.542225 C = 9380.447846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.165 4.165 5 C 0.095 3.905 6 C -0.165 4.165 7 C -0.086 4.086 8 C -0.068 4.068 9 C -0.144 4.144 10 C 0.082 3.918 11 H 0.120 0.880 12 C 0.505 3.495 13 O -0.588 6.588 14 N -0.692 5.692 15 C 0.271 3.729 16 H -0.003 1.003 17 C -0.136 4.136 18 C -0.544 4.544 19 H 0.080 0.920 20 C 0.012 3.988 21 N -0.920 5.920 22 Si 0.976 3.024 23 H -0.256 1.256 24 H -0.286 1.286 25 H -0.280 1.280 26 O -0.324 6.324 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.149 0.851 31 H 0.122 0.878 32 H 0.152 0.848 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.409 0.591 38 H 0.068 0.932 39 H 0.008 0.992 40 H 0.045 0.955 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.657 -2.664 4.197 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.183 4.183 5 C 0.050 3.950 6 C -0.166 4.166 7 C -0.104 4.104 8 C -0.105 4.105 9 C -0.182 4.182 10 C 0.023 3.977 11 H 0.137 0.863 12 C 0.290 3.710 13 O -0.469 6.469 14 N -0.342 5.342 15 C 0.168 3.832 16 H 0.015 0.985 17 C -0.195 4.195 18 C -0.582 4.582 19 H 0.098 0.902 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.800 3.200 23 H -0.179 1.179 24 H -0.212 1.212 25 H -0.205 1.205 26 O -0.238 6.238 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.167 0.833 31 H 0.140 0.860 32 H 0.170 0.830 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.246 0.754 38 H 0.087 0.913 39 H 0.028 0.972 40 H 0.064 0.936 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.055 -1.756 3.709 24.403 hybrid contribution 1.150 -0.471 -0.106 1.247 sum -22.906 -2.227 3.604 23.294 Atomic orbital electron populations 1.20758 0.88710 1.03663 1.03072 1.20203 0.97840 0.92579 1.01733 1.21077 0.91910 0.99362 0.98550 1.20792 0.95035 0.96090 1.06408 1.19152 0.81394 0.95094 0.99319 1.20150 0.95421 0.94205 1.06794 1.21098 0.91776 0.99171 0.98377 1.20590 0.92010 0.93398 1.04505 1.22221 0.98396 0.97653 0.99909 1.22308 0.88037 0.85841 1.01534 0.86296 1.20658 0.88160 0.83260 0.78876 1.90666 1.80591 1.31633 1.43991 1.46096 1.08654 1.20646 1.58843 1.18407 0.75745 0.95992 0.93019 0.98512 1.21931 1.02507 0.96367 0.98707 1.21552 0.94996 0.91926 1.49688 0.90226 1.25848 0.97691 1.01040 0.94205 1.70068 1.07859 1.30101 1.47760 0.85242 0.78425 0.78957 0.77374 1.17914 1.21174 1.20539 1.86033 1.16804 1.36617 1.84386 0.90371 0.90847 0.90522 0.83315 0.86031 0.82986 0.87237 0.87711 0.91880 0.86860 0.75448 0.91319 0.97239 0.93579 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.37 16 2 C -0.12 -2.13 5.88 -19.88 -0.12 -2.24 16 3 C -0.09 -1.82 9.70 22.22 0.22 -1.61 16 4 C -0.16 -4.39 9.94 22.43 0.22 -4.17 16 5 C 0.09 2.81 6.47 22.52 0.15 2.96 16 6 C -0.16 -3.75 5.75 -19.72 -0.11 -3.86 16 7 C -0.09 -1.54 9.32 22.30 0.21 -1.33 16 8 C -0.07 -1.21 5.87 29.93 0.18 -1.03 16 9 C -0.14 -3.48 5.45 30.76 0.17 -3.31 16 10 C 0.08 2.59 3.21 29.99 0.10 2.69 16 11 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 12 C 0.50 21.40 7.16 87.66 0.63 22.03 16 13 O -0.59 -31.72 16.18 15.86 0.26 -31.46 16 14 N -0.69 -28.52 5.00 -446.08 -2.23 -30.75 16 15 C 0.27 14.13 2.56 44.24 0.11 14.25 16 16 H 0.00 -0.19 7.58 -2.38 -0.02 -0.21 16 17 C -0.14 -7.00 9.26 71.98 0.67 -6.33 16 18 C -0.54 -28.21 8.73 25.60 0.22 -27.99 16 19 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 20 C 0.01 0.64 5.30 84.65 0.45 1.09 16 21 N -0.92 -52.81 11.32 21.45 0.24 -52.57 16 22 Si 0.98 41.31 29.54 68.60 2.03 43.34 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 26 O -0.32 -11.82 9.47 -72.86 -0.69 -12.51 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 29 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.11 2.26 7.85 -2.39 -0.02 2.24 16 37 H 0.41 13.41 8.29 -92.71 -0.77 12.64 16 38 H 0.07 3.85 6.07 -2.38 -0.01 3.84 16 39 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16 41 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -73.57 340.61 3.66 -69.90 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.26 Total: 23.28 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 3.79 Total: -9.23 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.99 Total: -83.32 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.43 Total: -43.97 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -73.57 3.66 -69.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279620219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.112 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds