Wall clock time and date at job start Tue Mar 31 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38294 * 120.00652 * 2 1 4 4 C 1.37961 * 119.95961 * 179.85471 * 3 2 1 5 5 C 1.39155 * 120.21277 * 0.52275 * 4 3 2 6 6 C 1.38368 * 119.69259 * 359.60223 * 5 4 3 7 7 C 1.38097 * 120.00878 * 180.27667 * 2 1 3 8 8 C 1.50773 * 121.40615 * 180.31774 * 6 5 4 9 9 C 1.53076 * 109.67700 * 342.19990 * 8 6 5 10 10 C 1.53403 * 108.30261 * 48.19812 * 9 8 6 11 11 H 1.08994 * 109.68755 * 54.99829 * 10 9 8 12 12 C 1.50701 * 109.68645 * 175.52225 * 10 9 8 13 13 O 1.21277 * 119.99874 * 114.99542 * 12 10 9 14 14 N 1.34770 * 119.99935 * 295.00304 * 12 10 9 15 15 C 1.46505 * 120.00121 * 180.02562 * 14 12 10 16 16 H 1.08998 * 109.47333 * 34.98901 * 15 14 12 17 17 C 1.53005 * 109.46540 * 274.99329 * 15 14 12 18 18 C 1.50701 * 109.47457 * 154.99722 * 15 14 12 19 19 H 1.07996 * 119.99632 * 5.45401 * 18 15 14 20 20 C 1.37868 * 119.99812 * 185.45930 * 18 15 14 21 21 N 1.31518 * 120.00393 * 9.55551 * 20 18 15 22 22 Si 1.86802 * 119.99726 * 189.55691 * 20 18 15 23 23 H 1.48500 * 109.47145 * 84.99488 * 22 20 18 24 24 H 1.48506 * 109.47227 * 204.99253 * 22 20 18 25 25 H 1.48494 * 109.47210 * 324.99119 * 22 20 18 26 26 O 1.35845 * 118.49757 * 179.46402 * 5 4 3 27 27 H 1.08998 * 109.47130 * 269.72495 * 1 2 3 28 28 H 1.09000 * 109.46959 * 29.72515 * 1 2 3 29 29 H 1.09002 * 109.46616 * 149.72308 * 1 2 3 30 30 H 1.07998 * 120.01927 * 0.09635 * 3 2 1 31 31 H 1.07998 * 119.89606 * 180.25809 * 4 3 2 32 32 H 1.07999 * 119.84648 * 359.89164 * 7 2 1 33 33 H 1.09000 * 109.43723 * 102.26081 * 8 6 5 34 34 H 1.08995 * 109.43756 * 222.14110 * 8 6 5 35 35 H 1.09005 * 109.69541 * 167.90002 * 9 8 6 36 36 H 1.08999 * 109.70006 * 288.44860 * 9 8 6 37 37 H 0.97002 * 120.00161 * 359.97438 * 14 12 10 38 38 H 1.09000 * 109.47091 * 63.68080 * 17 15 14 39 39 H 1.09000 * 109.47005 * 183.67639 * 17 15 14 40 40 H 1.09001 * 109.47493 * 303.67989 * 17 15 14 41 41 H 0.97000 * 119.99770 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1987 1.1976 0.0000 4 6 3.5783 1.1965 0.0030 5 6 4.2775 -0.0066 -0.0049 6 6 3.5828 -1.2032 -0.0075 7 6 2.1977 -1.1958 -0.0058 8 6 4.3011 -2.5288 -0.0088 9 6 5.7537 -2.3274 -0.4477 10 6 6.3399 -1.1554 0.3499 11 1 6.2207 -1.3415 1.4172 12 6 7.8025 -0.9994 0.0221 13 8 8.1946 0.0013 -0.5398 14 7 8.6748 -1.9719 0.3533 15 6 10.0968 -1.8199 0.0352 16 1 10.3813 -0.7724 0.1341 17 6 10.3505 -2.2840 -1.4005 18 6 10.9161 -2.6550 0.9852 19 1 10.4250 -3.3078 1.6915 20 6 12.2927 -2.5853 0.9526 21 7 12.8875 -1.6606 0.2310 22 14 13.3129 -3.8046 1.9334 23 1 13.4989 -5.0459 1.1398 24 1 14.6386 -3.2087 2.2381 25 1 12.6126 -4.1284 3.2022 26 8 5.6354 0.0330 -0.0127 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3632 -0.8875 -0.5182 30 1 1.6591 2.1331 0.0016 31 1 4.1173 2.1323 0.0072 32 1 1.6554 -2.1298 -0.0085 33 1 4.2810 -2.9533 0.9949 34 1 3.8046 -3.2097 -0.7000 35 1 6.3272 -3.2323 -0.2462 36 1 5.7876 -2.1009 -1.5134 37 1 8.3612 -2.7721 0.8031 38 1 9.8090 -1.6385 -2.0920 39 1 11.4178 -2.2326 -1.6157 40 1 10.0054 -3.3114 -1.5167 41 1 13.8560 -1.6119 0.2079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279620223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:59 Heat of formation + Delta-G solvation = -67.187109 kcal Electronic energy + Delta-G solvation = -22575.277280 eV Core-core repulsion = 19226.519347 eV Total energy + Delta-G solvation = -3348.757934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87976 -38.95419 -37.48507 -34.82637 -34.41712 -32.53433 -32.19715 -30.72917 -29.08094 -27.37936 -25.64020 -25.22974 -23.50606 -22.46313 -21.44748 -19.85654 -19.38325 -17.86486 -17.60355 -16.41887 -15.90072 -15.24274 -15.13195 -14.88943 -14.55681 -14.35556 -14.08051 -13.90419 -13.57965 -13.35836 -13.33023 -12.81368 -12.55586 -12.46159 -12.41101 -11.88066 -11.67414 -11.39219 -11.20229 -11.08896 -11.07077 -10.91987 -10.78519 -10.45682 -10.39379 -10.29350 -9.16498 -8.99829 -8.88375 -8.54265 -8.05272 -8.00473 -6.17737 -4.23876 1.22130 1.32684 2.97239 3.21724 3.23468 3.30169 3.31480 3.60908 4.13014 4.34577 4.46796 4.64236 4.65237 4.80928 4.88138 4.98662 5.08137 5.16039 5.24321 5.25626 5.39685 5.42041 5.48612 5.55731 5.66493 5.69105 5.85218 5.92866 6.00798 6.19559 6.35703 6.48925 6.70727 6.72609 6.84648 7.03224 7.34584 7.40702 7.54998 7.62980 7.80516 8.01470 8.56770 8.74545 9.02096 9.42073 10.90789 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039605 B = 0.003098 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.804511 B = 9036.684355 C = 9328.017061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.088 4.088 4 C -0.144 4.144 5 C 0.134 3.866 6 C -0.160 4.160 7 C -0.084 4.084 8 C -0.075 4.075 9 C -0.149 4.149 10 C 0.073 3.927 11 H 0.093 0.907 12 C 0.509 3.491 13 O -0.530 6.530 14 N -0.703 5.703 15 C 0.264 3.736 16 H 0.057 0.943 17 C -0.142 4.142 18 C -0.538 4.538 19 H 0.062 0.938 20 C 0.069 3.931 21 N -0.880 5.880 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.274 1.274 26 O -0.286 6.286 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.389 0.611 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.170 -1.472 0.442 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.163 4.163 5 C 0.089 3.911 6 C -0.161 4.161 7 C -0.102 4.102 8 C -0.112 4.112 9 C -0.187 4.187 10 C 0.013 3.987 11 H 0.111 0.889 12 C 0.292 3.708 13 O -0.406 6.406 14 N -0.352 5.352 15 C 0.163 3.837 16 H 0.075 0.925 17 C -0.201 4.201 18 C -0.576 4.576 19 H 0.080 0.920 20 C -0.135 4.135 21 N -0.517 5.517 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.199 1.199 26 O -0.199 6.199 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.221 0.779 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.518 -0.506 -0.075 21.524 hybrid contribution 0.462 -1.239 0.766 1.528 sum -21.056 -1.745 0.691 21.140 Atomic orbital electron populations 1.20691 0.91220 1.02462 1.01977 1.19743 0.96018 0.93057 1.03915 1.20778 0.92934 0.97694 0.99214 1.20622 0.93765 0.96605 1.05267 1.18820 0.82553 0.93416 0.96352 1.19843 0.94451 0.94326 1.07507 1.20721 0.92470 0.97665 0.99390 1.20494 0.94225 0.93933 1.02562 1.22203 0.96294 0.98584 1.01572 1.22401 0.91731 0.84760 0.99781 0.88933 1.19754 0.86013 0.84520 0.80511 1.90703 1.78993 1.29336 1.41597 1.46412 1.10214 1.19615 1.58976 1.18805 0.73437 0.99091 0.92357 0.92534 1.22025 1.02401 0.97863 0.97794 1.21140 0.91289 1.25623 1.19581 0.91987 1.24893 0.97709 0.95318 0.95599 1.69986 1.10010 1.31266 1.40404 0.86502 0.79475 0.81216 0.80148 1.20389 1.21137 1.19884 1.86114 1.14799 1.35576 1.83398 0.91578 0.91779 0.91860 0.85585 0.85030 0.85996 0.90149 0.89719 0.88843 0.89805 0.77858 0.96093 0.90746 0.95150 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.13 -1.28 5.88 -104.65 -0.62 -1.89 16 3 C -0.09 -0.94 9.70 -39.66 -0.38 -1.32 16 4 C -0.14 -1.88 9.94 -39.34 -0.39 -2.27 16 5 C 0.13 1.97 6.47 -39.19 -0.25 1.72 16 6 C -0.16 -1.97 5.75 -104.44 -0.60 -2.57 16 7 C -0.08 -0.88 9.32 -39.53 -0.37 -1.25 16 8 C -0.08 -0.77 5.86 -27.81 -0.16 -0.94 16 9 C -0.15 -1.85 5.45 -26.48 -0.14 -2.00 16 10 C 0.07 1.16 3.21 -27.67 -0.09 1.07 16 11 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 12 C 0.51 10.43 7.16 -10.99 -0.08 10.35 16 13 O -0.53 -13.40 16.18 -14.20 -0.23 -13.63 16 14 N -0.70 -14.31 5.00 -54.93 -0.27 -14.58 16 15 C 0.26 6.65 2.42 -69.08 -0.17 6.48 16 16 H 0.06 1.67 7.52 -51.93 -0.39 1.28 16 17 C -0.14 -3.44 9.36 37.16 0.35 -3.09 16 18 C -0.54 -14.04 8.66 -34.44 -0.30 -14.33 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 21 N -0.88 -24.91 12.16 55.43 0.67 -24.24 16 22 Si 0.90 20.38 29.55 -169.99 -5.02 15.36 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 O -0.29 -5.02 9.47 -39.01 -0.37 -5.39 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.39 8.08 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.00 7.85 -51.93 -0.41 0.59 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.39 6.59 8.28 -40.82 -0.34 6.26 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 1.94 6.83 -51.93 -0.35 1.59 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -32.08 341.90 -9.11 -41.19 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.10 Total: 4.82 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.94 Total: -8.69 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.40 Total: -38.82 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.60 Total: -19.02 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.08 -9.11 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279620223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.998 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds