Wall clock time and date at job start Tue Mar 31 2020 05:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38294 * 120.00652 * 2 1 4 4 C 1.37961 * 119.95961 * 179.85471 * 3 2 1 5 5 C 1.39155 * 120.21277 * 0.52275 * 4 3 2 6 6 C 1.38368 * 119.69259 * 359.60223 * 5 4 3 7 7 C 1.38097 * 120.00878 * 180.27667 * 2 1 3 8 8 C 1.50773 * 121.40615 * 180.31774 * 6 5 4 9 9 C 1.53076 * 109.67700 * 342.19990 * 8 6 5 10 10 C 1.53403 * 108.30261 * 48.19812 * 9 8 6 11 11 H 1.08994 * 109.68755 * 54.99829 * 10 9 8 12 12 C 1.50701 * 109.68645 * 175.52225 * 10 9 8 13 13 O 1.21277 * 119.99874 * 114.99542 * 12 10 9 14 14 N 1.34770 * 119.99935 * 295.00304 * 12 10 9 15 15 C 1.46505 * 120.00121 * 180.02562 * 14 12 10 16 16 H 1.08998 * 109.47333 * 34.98901 * 15 14 12 17 17 C 1.53005 * 109.46540 * 274.99329 * 15 14 12 18 18 C 1.50701 * 109.47457 * 154.99722 * 15 14 12 19 19 H 1.07996 * 119.99632 * 5.45401 * 18 15 14 20 20 C 1.37868 * 119.99812 * 185.45930 * 18 15 14 21 21 N 1.31518 * 120.00393 * 9.55551 * 20 18 15 22 22 Si 1.86802 * 119.99726 * 189.55691 * 20 18 15 23 23 H 1.48500 * 109.47145 * 84.99488 * 22 20 18 24 24 H 1.48506 * 109.47227 * 204.99253 * 22 20 18 25 25 H 1.48494 * 109.47210 * 324.99119 * 22 20 18 26 26 O 1.35845 * 118.49757 * 179.46402 * 5 4 3 27 27 H 1.08998 * 109.47130 * 269.72495 * 1 2 3 28 28 H 1.09000 * 109.46959 * 29.72515 * 1 2 3 29 29 H 1.09002 * 109.46616 * 149.72308 * 1 2 3 30 30 H 1.07998 * 120.01927 * 0.09635 * 3 2 1 31 31 H 1.07998 * 119.89606 * 180.25809 * 4 3 2 32 32 H 1.07999 * 119.84648 * 359.89164 * 7 2 1 33 33 H 1.09000 * 109.43723 * 102.26081 * 8 6 5 34 34 H 1.08995 * 109.43756 * 222.14110 * 8 6 5 35 35 H 1.09005 * 109.69541 * 167.90002 * 9 8 6 36 36 H 1.08999 * 109.70006 * 288.44860 * 9 8 6 37 37 H 0.97002 * 120.00161 * 359.97438 * 14 12 10 38 38 H 1.09000 * 109.47091 * 63.68080 * 17 15 14 39 39 H 1.09000 * 109.47005 * 183.67639 * 17 15 14 40 40 H 1.09001 * 109.47493 * 303.67989 * 17 15 14 41 41 H 0.97000 * 119.99770 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1987 1.1976 0.0000 4 6 3.5783 1.1965 0.0030 5 6 4.2775 -0.0066 -0.0049 6 6 3.5828 -1.2032 -0.0075 7 6 2.1977 -1.1958 -0.0058 8 6 4.3011 -2.5288 -0.0088 9 6 5.7537 -2.3274 -0.4477 10 6 6.3399 -1.1554 0.3499 11 1 6.2207 -1.3415 1.4172 12 6 7.8025 -0.9994 0.0221 13 8 8.1946 0.0013 -0.5398 14 7 8.6748 -1.9719 0.3533 15 6 10.0968 -1.8199 0.0352 16 1 10.3813 -0.7724 0.1341 17 6 10.3505 -2.2840 -1.4005 18 6 10.9161 -2.6550 0.9852 19 1 10.4250 -3.3078 1.6915 20 6 12.2927 -2.5853 0.9526 21 7 12.8875 -1.6606 0.2310 22 14 13.3129 -3.8046 1.9334 23 1 13.4989 -5.0459 1.1398 24 1 14.6386 -3.2087 2.2381 25 1 12.6126 -4.1284 3.2022 26 8 5.6354 0.0330 -0.0127 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3632 -0.8875 -0.5182 30 1 1.6591 2.1331 0.0016 31 1 4.1173 2.1323 0.0072 32 1 1.6554 -2.1298 -0.0085 33 1 4.2810 -2.9533 0.9949 34 1 3.8046 -3.2097 -0.7000 35 1 6.3272 -3.2323 -0.2462 36 1 5.7876 -2.1009 -1.5134 37 1 8.3612 -2.7721 0.8031 38 1 9.8090 -1.6385 -2.0920 39 1 11.4178 -2.2326 -1.6157 40 1 10.0054 -3.3114 -1.5167 41 1 13.8560 -1.6119 0.2079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279620223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:58 Heat of formation + Delta-G solvation = -86.538196 kcal Electronic energy + Delta-G solvation = -22576.116407 eV Core-core repulsion = 19226.519347 eV Total energy + Delta-G solvation = -3349.597060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.97876 -40.43284 -38.61601 -36.72484 -35.44596 -34.32649 -33.18123 -31.89108 -30.70424 -28.36167 -27.32316 -26.57746 -24.46779 -23.48832 -23.06811 -21.42172 -20.56754 -19.24199 -18.92582 -17.74353 -17.44975 -17.00051 -16.45712 -15.99447 -15.91000 -15.43913 -15.27992 -14.91648 -14.82817 -14.58455 -14.40288 -14.16770 -13.86238 -13.78593 -13.42477 -13.16414 -13.00879 -12.93701 -12.70144 -12.56097 -12.38039 -12.26891 -12.15957 -12.03140 -11.87305 -11.40062 -11.18573 -10.68451 -10.57945 -9.87589 -9.72837 -8.96739 -8.21720 -6.35992 0.36637 0.43032 1.45297 1.46798 1.56028 1.59704 1.73663 2.40346 2.68951 2.85601 3.10930 3.49392 3.64179 3.74080 3.82820 3.90711 4.05740 4.23166 4.28113 4.42404 4.54817 4.61397 4.70199 4.75822 4.84595 4.88096 4.92373 4.98447 5.00195 5.03991 5.15851 5.20031 5.36671 5.37721 5.47738 5.54707 5.59425 5.69152 5.81855 5.91932 5.99036 6.44882 6.71424 6.84963 7.28539 7.44366 8.87831 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039605 B = 0.003098 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.804511 B = 9036.684355 C = 9328.017061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.165 4.165 5 C 0.095 3.905 6 C -0.165 4.165 7 C -0.086 4.086 8 C -0.069 4.069 9 C -0.142 4.142 10 C 0.081 3.919 11 H 0.117 0.883 12 C 0.505 3.495 13 O -0.588 6.588 14 N -0.692 5.692 15 C 0.269 3.731 16 H 0.000 1.000 17 C -0.129 4.129 18 C -0.547 4.547 19 H 0.079 0.921 20 C 0.015 3.985 21 N -0.921 5.921 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.261 1.261 26 O -0.325 6.325 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.153 0.847 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.013 0.987 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.079 -4.387 1.624 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.184 4.184 5 C 0.050 3.950 6 C -0.166 4.166 7 C -0.104 4.104 8 C -0.106 4.106 9 C -0.180 4.180 10 C 0.022 3.978 11 H 0.134 0.866 12 C 0.291 3.709 13 O -0.469 6.469 14 N -0.342 5.342 15 C 0.166 3.834 16 H 0.018 0.982 17 C -0.187 4.187 18 C -0.585 4.585 19 H 0.097 0.903 20 C -0.186 4.186 21 N -0.559 5.559 22 Si 0.797 3.203 23 H -0.193 1.193 24 H -0.216 1.216 25 H -0.185 1.185 26 O -0.239 6.239 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.139 0.861 32 H 0.171 0.829 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.084 0.916 37 H 0.246 0.754 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.481 -3.461 1.129 24.750 hybrid contribution 1.258 -0.226 0.380 1.333 sum -23.224 -3.687 1.509 23.563 Atomic orbital electron populations 1.20760 0.88706 1.03675 1.03062 1.20204 0.97841 0.92581 1.01728 1.21073 0.91903 0.99374 0.98575 1.20794 0.95050 0.96115 1.06428 1.19156 0.81397 0.95116 0.99314 1.20139 0.95425 0.94235 1.06752 1.21100 0.91777 0.99162 0.98358 1.20577 0.92108 0.93361 1.04515 1.22218 0.98306 0.97592 0.99904 1.22309 0.88062 0.85919 1.01527 0.86590 1.20652 0.88185 0.83196 0.78915 1.90669 1.80469 1.31597 1.44145 1.46084 1.08555 1.20625 1.58948 1.18417 0.76046 0.95816 0.93106 0.98226 1.21847 1.00763 0.99051 0.97087 1.21497 0.91713 1.25534 1.19788 0.90261 1.25848 0.99116 0.96895 0.96720 1.70149 1.10241 1.33205 1.42289 0.85348 0.77284 0.78655 0.78999 1.19343 1.21618 1.18511 1.86039 1.16801 1.36577 1.84474 0.90406 0.90859 0.90471 0.83360 0.86116 0.82929 0.87808 0.87104 0.86678 0.91632 0.75436 0.96809 0.93105 0.92655 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.37 16 2 C -0.12 -2.12 5.88 -19.88 -0.12 -2.24 16 3 C -0.09 -1.84 9.70 22.22 0.22 -1.62 16 4 C -0.17 -4.44 9.94 22.42 0.22 -4.22 16 5 C 0.09 2.80 6.47 22.52 0.15 2.95 16 6 C -0.16 -3.71 5.75 -19.75 -0.11 -3.82 16 7 C -0.09 -1.52 9.32 22.30 0.21 -1.31 16 8 C -0.07 -1.18 5.86 29.90 0.18 -1.01 16 9 C -0.14 -3.30 5.45 30.75 0.17 -3.13 16 10 C 0.08 2.56 3.21 29.98 0.10 2.66 16 11 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 12 C 0.51 21.39 7.16 87.66 0.63 22.02 16 13 O -0.59 -31.78 16.18 15.87 0.26 -31.52 16 14 N -0.69 -28.38 5.00 -446.09 -2.23 -30.61 16 15 C 0.27 13.97 2.42 44.25 0.11 14.08 16 16 H 0.00 -0.01 7.52 -2.39 -0.02 -0.03 16 17 C -0.13 -6.39 9.36 71.98 0.67 -5.72 16 18 C -0.55 -28.53 8.66 25.60 0.22 -28.30 16 19 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 20 C 0.01 0.78 5.17 84.65 0.44 1.22 16 21 N -0.92 -53.72 12.16 21.44 0.26 -53.46 16 22 Si 0.97 41.46 29.55 68.60 2.03 43.49 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 O -0.32 -11.88 9.47 -72.92 -0.69 -12.57 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 29 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 30 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 2.12 7.85 -2.38 -0.02 2.11 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.41 13.28 8.28 -92.71 -0.77 12.51 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 2.74 6.83 -2.39 -0.02 2.73 16 40 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -74.58 341.90 3.67 -70.91 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.26 Total: 22.58 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 3.78 Total: -8.82 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -1.97 Total: -84.07 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.43 Total: -44.09 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -74.58 3.67 -70.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279620223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.625 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds