Wall clock time and date at job start Tue Mar 31 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38295 * 120.00667 * 2 1 4 4 C 1.37966 * 119.95893 * 179.97438 * 3 2 1 5 5 C 1.39148 * 120.21711 * 0.02562 * 4 3 2 6 6 C 1.38373 * 119.68958 * 0.15776 * 5 4 3 7 7 C 1.38101 * 120.01216 * 180.02562 * 2 1 3 8 8 C 1.50766 * 121.40532 * 179.53175 * 6 5 4 9 9 C 1.53075 * 109.67009 * 17.91202 * 8 6 5 10 10 C 1.53403 * 108.29666 * 311.74890 * 9 8 6 11 11 H 1.08997 * 109.70955 * 304.94728 * 10 9 8 12 12 C 1.50698 * 109.67737 * 184.41396 * 10 9 8 13 13 O 1.21279 * 119.99949 * 246.05511 * 12 10 9 14 14 N 1.34779 * 120.00015 * 66.06495 * 12 10 9 15 15 C 1.46497 * 120.00248 * 179.97438 * 14 12 10 16 16 H 1.09005 * 109.47164 * 325.00272 * 15 14 12 17 17 C 1.53001 * 109.47198 * 84.99628 * 15 14 12 18 18 C 1.50698 * 109.47496 * 204.99630 * 15 14 12 19 19 H 1.08005 * 119.99706 * 354.36611 * 18 15 14 20 20 C 1.37877 * 119.99915 * 174.36080 * 18 15 14 21 21 N 1.31521 * 119.99340 * 156.86838 * 20 18 15 22 22 Si 1.86798 * 120.00380 * 336.86843 * 20 18 15 23 23 H 1.48500 * 109.47063 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.46639 * 299.99865 * 22 20 18 25 25 H 1.48500 * 109.47107 * 59.99594 * 22 20 18 26 26 O 1.35842 * 118.50696 * 180.22596 * 5 4 3 27 27 H 1.08999 * 109.47157 * 269.97736 * 1 2 3 28 28 H 1.09003 * 109.47502 * 29.98145 * 1 2 3 29 29 H 1.09001 * 109.47012 * 149.97501 * 1 2 3 30 30 H 1.08002 * 120.01768 * 359.94928 * 3 2 1 31 31 H 1.08003 * 119.88875 * 180.02562 * 4 3 2 32 32 H 1.08002 * 119.84079 * 0.02562 * 7 2 1 33 33 H 1.08996 * 109.44206 * 137.97675 * 8 6 5 34 34 H 1.09000 * 109.43769 * 257.89891 * 8 6 5 35 35 H 1.09002 * 109.70177 * 192.04466 * 9 8 6 36 36 H 1.09009 * 109.69576 * 71.44770 * 9 8 6 37 37 H 0.97001 * 119.99445 * 359.97438 * 14 12 10 38 38 H 1.09001 * 109.47164 * 53.09906 * 17 15 14 39 39 H 1.08994 * 109.47265 * 173.09878 * 17 15 14 40 40 H 1.09002 * 109.47128 * 293.10629 * 17 15 14 41 41 H 0.96994 * 120.00358 * 354.92933 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1976 0.0000 4 6 3.5782 1.1964 0.0005 5 6 4.2775 -0.0066 0.0005 6 6 3.5827 -1.2032 -0.0033 7 6 2.1977 -1.1958 -0.0005 8 6 4.3010 -2.5287 -0.0140 9 6 5.7543 -2.3307 0.4242 10 6 6.3393 -1.1530 -0.3657 11 1 6.2196 -1.3314 -1.4342 12 6 7.8021 -0.9986 -0.0377 13 8 8.1912 -0.0104 0.5479 14 7 8.6778 -1.9587 -0.3952 15 6 10.0999 -1.8085 -0.0769 16 1 10.3796 -0.7575 -0.1504 17 6 10.3594 -2.3068 1.3462 18 6 10.9205 -2.6159 -1.0493 19 1 10.4304 -3.2555 -1.7686 20 6 12.2967 -2.5382 -1.0208 21 7 13.0211 -3.5220 -1.5080 22 14 13.1325 -1.0358 -0.2903 23 1 14.6061 -1.1965 -0.3800 24 1 12.7204 0.1753 -1.0442 25 1 12.7355 -0.8917 1.1334 26 8 5.6354 0.0328 0.0058 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6590 2.1331 -0.0008 31 1 4.1172 2.1324 0.0010 32 1 1.6553 -2.1298 -0.0014 33 1 3.8056 -3.2154 0.6723 34 1 4.2801 -2.9445 -1.0213 35 1 6.3274 -3.2341 0.2154 36 1 5.7896 -2.1111 1.4914 37 1 8.3665 -2.7492 -0.8634 38 1 9.9675 -3.3182 1.4541 39 1 11.4319 -2.3101 1.5401 40 1 9.8633 -1.6472 2.0583 41 1 12.5903 -4.3331 -1.8198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279620228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:01 Heat of formation + Delta-G solvation = -66.188288 kcal Electronic energy + Delta-G solvation = -22647.866942 eV Core-core repulsion = 19299.152321 eV Total energy + Delta-G solvation = -3348.714622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95873 -39.10018 -37.58778 -35.00305 -34.49357 -32.61960 -32.28828 -30.88385 -29.53797 -27.50384 -25.73073 -24.84647 -23.57545 -22.51460 -21.31625 -19.85733 -19.53116 -18.03324 -17.92060 -16.80366 -16.39814 -15.34426 -15.18423 -14.96952 -14.57279 -14.30450 -13.97466 -13.89357 -13.69924 -13.37904 -13.31119 -12.94458 -12.69076 -12.60397 -12.49177 -12.23054 -11.82269 -11.63655 -11.46992 -11.40806 -11.23099 -10.98994 -10.51940 -10.51440 -10.14452 -9.86696 -9.22472 -9.17335 -8.93577 -8.34093 -8.27567 -8.09346 -6.63687 -4.25239 1.17007 1.27334 2.86138 3.06210 3.39255 3.45036 3.55139 3.60549 4.03663 4.40138 4.41552 4.57660 4.57868 4.75829 4.79740 4.91806 5.02774 5.07680 5.16393 5.19032 5.33161 5.35734 5.40642 5.50185 5.61130 5.64231 5.79383 5.86450 5.94309 6.14240 6.29960 6.34775 6.44194 6.50872 6.62842 6.66283 6.91265 7.20539 7.30525 7.42992 7.60293 8.20209 8.36285 8.63920 8.86276 9.40704 10.74863 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039767 B = 0.003271 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.940529 B = 8558.635659 C = 8940.194648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.126 4.126 3 C -0.088 4.088 4 C -0.143 4.143 5 C 0.133 3.867 6 C -0.160 4.160 7 C -0.084 4.084 8 C -0.075 4.075 9 C -0.149 4.149 10 C 0.074 3.926 11 H 0.094 0.906 12 C 0.510 3.490 13 O -0.532 6.532 14 N -0.696 5.696 15 C 0.245 3.755 16 H 0.042 0.958 17 C -0.157 4.157 18 C -0.626 4.626 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.889 5.889 22 Si 1.033 2.967 23 H -0.282 1.282 24 H -0.280 1.280 25 H -0.273 1.273 26 O -0.287 6.287 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.394 0.606 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.336 2.641 2.472 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.162 4.162 5 C 0.088 3.912 6 C -0.161 4.161 7 C -0.102 4.102 8 C -0.112 4.112 9 C -0.187 4.187 10 C 0.014 3.986 11 H 0.112 0.888 12 C 0.293 3.707 13 O -0.409 6.409 14 N -0.346 5.346 15 C 0.142 3.858 16 H 0.059 0.941 17 C -0.215 4.215 18 C -0.663 4.663 19 H 0.081 0.919 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.860 3.140 23 H -0.208 1.208 24 H -0.206 1.206 25 H -0.199 1.199 26 O -0.199 6.199 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.227 0.773 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.389 4.188 3.188 22.027 hybrid contribution -1.710 -1.367 -0.607 2.272 sum -23.098 2.820 2.581 23.413 Atomic orbital electron populations 1.20694 0.91173 1.02492 1.02029 1.19752 0.96057 0.93041 1.03768 1.20787 0.92918 0.97724 0.99184 1.20616 0.93773 0.96556 1.05261 1.18806 0.82435 0.93434 0.96549 1.19837 0.94473 0.94279 1.07483 1.20728 0.92456 0.97709 0.99345 1.20493 0.94115 0.93989 1.02632 1.22206 0.96420 0.98440 1.01598 1.22356 0.91416 0.84954 0.99859 0.88817 1.19829 0.86208 0.84233 0.80434 1.90690 1.79249 1.29853 1.41082 1.46186 1.09351 1.21263 1.57781 1.19033 0.75834 0.97765 0.93123 0.94053 1.22433 1.01320 0.99676 0.98092 1.21992 0.93127 1.30443 1.20750 0.91871 1.25635 0.93994 1.01175 0.95313 1.70873 1.38654 1.04724 1.37817 0.84192 0.76457 0.76028 0.77373 1.20789 1.20580 1.19926 1.86097 1.14921 1.35667 1.83264 0.91534 0.91748 0.91832 0.85538 0.85034 0.85948 0.89638 0.90098 0.88851 0.89769 0.77323 0.93709 0.92112 0.95145 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.13 -1.23 5.88 -104.65 -0.62 -1.84 16 3 C -0.09 -0.91 9.70 -39.66 -0.38 -1.29 16 4 C -0.14 -1.82 9.94 -39.34 -0.39 -2.21 16 5 C 0.13 1.90 6.47 -39.19 -0.25 1.65 16 6 C -0.16 -1.91 5.75 -104.44 -0.60 -2.51 16 7 C -0.08 -0.86 9.32 -39.53 -0.37 -1.23 16 8 C -0.08 -0.76 5.86 -27.81 -0.16 -0.92 16 9 C -0.15 -1.80 5.46 -26.48 -0.14 -1.95 16 10 C 0.07 1.13 3.21 -27.68 -0.09 1.05 16 11 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 12 C 0.51 10.05 7.15 -10.99 -0.08 9.97 16 13 O -0.53 -12.76 16.18 -14.20 -0.23 -12.99 16 14 N -0.70 -13.84 5.03 -54.93 -0.28 -14.12 16 15 C 0.25 5.86 2.16 -69.08 -0.15 5.71 16 16 H 0.04 1.08 6.15 -51.93 -0.32 0.76 16 17 C -0.16 -3.52 9.21 37.16 0.34 -3.18 16 18 C -0.63 -16.65 8.95 -34.44 -0.31 -16.96 16 19 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 20 C 0.05 1.30 5.19 -17.82 -0.09 1.20 16 21 N -0.89 -26.01 13.70 55.43 0.76 -25.25 16 22 Si 1.03 24.92 26.44 -169.99 -4.50 20.43 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.25 6.15 56.52 0.35 -5.90 16 26 O -0.29 -4.86 9.47 -39.00 -0.37 -5.23 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.99 7.96 -51.93 -0.41 0.57 16 36 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.39 6.72 8.36 -40.82 -0.34 6.38 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.40 5.48 -51.93 -0.28 1.12 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.27 7.80 8.73 -40.82 -0.36 7.45 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -32.35 337.42 -8.51 -40.86 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.05 Total: 4.11 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.94 Total: -12.89 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.48 Total: -39.37 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.60 Total: -18.22 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.50 Total: 20.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.35 -8.51 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279620228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.329 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds