Wall clock time and date at job start Tue Mar 31 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38295 * 120.00667 * 2 1 4 4 C 1.37966 * 119.95893 * 179.97438 * 3 2 1 5 5 C 1.39148 * 120.21711 * 0.02562 * 4 3 2 6 6 C 1.38373 * 119.68958 * 0.15776 * 5 4 3 7 7 C 1.38101 * 120.01216 * 180.02562 * 2 1 3 8 8 C 1.50766 * 121.40532 * 179.53175 * 6 5 4 9 9 C 1.53075 * 109.67009 * 17.91202 * 8 6 5 10 10 C 1.53403 * 108.29666 * 311.74890 * 9 8 6 11 11 H 1.08997 * 109.70955 * 304.94728 * 10 9 8 12 12 C 1.50698 * 109.67737 * 184.41396 * 10 9 8 13 13 O 1.21279 * 119.99949 * 246.05511 * 12 10 9 14 14 N 1.34779 * 120.00015 * 66.06495 * 12 10 9 15 15 C 1.46497 * 120.00248 * 179.97438 * 14 12 10 16 16 H 1.09005 * 109.47164 * 325.00272 * 15 14 12 17 17 C 1.53001 * 109.47198 * 84.99628 * 15 14 12 18 18 C 1.50698 * 109.47496 * 204.99630 * 15 14 12 19 19 H 1.08005 * 119.99706 * 354.36611 * 18 15 14 20 20 C 1.37877 * 119.99915 * 174.36080 * 18 15 14 21 21 N 1.31521 * 119.99340 * 156.86838 * 20 18 15 22 22 Si 1.86798 * 120.00380 * 336.86843 * 20 18 15 23 23 H 1.48500 * 109.47063 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.46639 * 299.99865 * 22 20 18 25 25 H 1.48500 * 109.47107 * 59.99594 * 22 20 18 26 26 O 1.35842 * 118.50696 * 180.22596 * 5 4 3 27 27 H 1.08999 * 109.47157 * 269.97736 * 1 2 3 28 28 H 1.09003 * 109.47502 * 29.98145 * 1 2 3 29 29 H 1.09001 * 109.47012 * 149.97501 * 1 2 3 30 30 H 1.08002 * 120.01768 * 359.94928 * 3 2 1 31 31 H 1.08003 * 119.88875 * 180.02562 * 4 3 2 32 32 H 1.08002 * 119.84079 * 0.02562 * 7 2 1 33 33 H 1.08996 * 109.44206 * 137.97675 * 8 6 5 34 34 H 1.09000 * 109.43769 * 257.89891 * 8 6 5 35 35 H 1.09002 * 109.70177 * 192.04466 * 9 8 6 36 36 H 1.09009 * 109.69576 * 71.44770 * 9 8 6 37 37 H 0.97001 * 119.99445 * 359.97438 * 14 12 10 38 38 H 1.09001 * 109.47164 * 53.09906 * 17 15 14 39 39 H 1.08994 * 109.47265 * 173.09878 * 17 15 14 40 40 H 1.09002 * 109.47128 * 293.10629 * 17 15 14 41 41 H 0.96994 * 120.00358 * 354.92933 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1976 0.0000 4 6 3.5782 1.1964 0.0005 5 6 4.2775 -0.0066 0.0005 6 6 3.5827 -1.2032 -0.0033 7 6 2.1977 -1.1958 -0.0005 8 6 4.3010 -2.5287 -0.0140 9 6 5.7543 -2.3307 0.4242 10 6 6.3393 -1.1530 -0.3657 11 1 6.2196 -1.3314 -1.4342 12 6 7.8021 -0.9986 -0.0377 13 8 8.1912 -0.0104 0.5479 14 7 8.6778 -1.9587 -0.3952 15 6 10.0999 -1.8085 -0.0769 16 1 10.3796 -0.7575 -0.1504 17 6 10.3594 -2.3068 1.3462 18 6 10.9205 -2.6159 -1.0493 19 1 10.4304 -3.2555 -1.7686 20 6 12.2967 -2.5382 -1.0208 21 7 13.0211 -3.5220 -1.5080 22 14 13.1325 -1.0358 -0.2903 23 1 14.6061 -1.1965 -0.3800 24 1 12.7204 0.1753 -1.0442 25 1 12.7355 -0.8917 1.1334 26 8 5.6354 0.0328 0.0058 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6590 2.1331 -0.0008 31 1 4.1172 2.1324 0.0010 32 1 1.6553 -2.1298 -0.0014 33 1 3.8056 -3.2154 0.6723 34 1 4.2801 -2.9445 -1.0213 35 1 6.3274 -3.2341 0.2154 36 1 5.7896 -2.1111 1.4914 37 1 8.3665 -2.7492 -0.8634 38 1 9.9675 -3.3182 1.4541 39 1 11.4319 -2.3101 1.5401 40 1 9.8633 -1.6472 2.0583 41 1 12.5903 -4.3331 -1.8198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279620228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:00 Heat of formation + Delta-G solvation = -86.114210 kcal Electronic energy + Delta-G solvation = -22648.730995 eV Core-core repulsion = 19299.152321 eV Total energy + Delta-G solvation = -3349.578674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02313 -40.51779 -38.65881 -36.84519 -35.48401 -34.48829 -33.24777 -32.09809 -30.98802 -28.43170 -26.95793 -26.56521 -24.50193 -23.44807 -22.91163 -21.45061 -20.63486 -19.88948 -18.97015 -18.31429 -17.54162 -16.88608 -16.46968 -15.96709 -15.67558 -15.46914 -15.34933 -14.96015 -14.88643 -14.63003 -14.58671 -14.27771 -14.18134 -13.85939 -13.53537 -13.45272 -13.32383 -13.12584 -12.59833 -12.46808 -12.31459 -12.10295 -12.02055 -11.90789 -11.76767 -11.43625 -11.24739 -10.78743 -10.47814 -10.03669 -9.75038 -8.99174 -8.82742 -6.44291 0.34568 0.40917 1.45430 1.48726 1.49554 1.64724 1.71252 2.40831 2.63134 2.80310 2.93515 3.44805 3.55784 3.70415 3.78836 3.85560 4.03800 4.18883 4.24902 4.39653 4.46439 4.52399 4.57709 4.68236 4.73497 4.74462 4.83833 4.91205 4.94061 5.00187 5.04370 5.13317 5.18376 5.35484 5.39273 5.45379 5.52653 5.61522 5.67471 5.88095 6.00782 6.40450 6.51048 6.70433 7.20250 7.30773 8.55573 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039767 B = 0.003271 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.940529 B = 8558.635659 C = 8940.194648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.163 4.163 5 C 0.095 3.905 6 C -0.165 4.165 7 C -0.087 4.087 8 C -0.070 4.070 9 C -0.143 4.143 10 C 0.080 3.920 11 H 0.114 0.886 12 C 0.509 3.491 13 O -0.580 6.580 14 N -0.691 5.691 15 C 0.247 3.753 16 H 0.019 0.981 17 C -0.149 4.149 18 C -0.621 4.621 19 H 0.048 0.952 20 C 0.006 3.994 21 N -0.917 5.917 22 Si 1.063 2.937 23 H -0.279 1.279 24 H -0.276 1.276 25 H -0.255 1.255 26 O -0.322 6.322 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.123 0.877 32 H 0.151 0.849 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.408 0.592 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.267 1.939 2.787 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.182 4.182 5 C 0.051 3.949 6 C -0.166 4.166 7 C -0.105 4.105 8 C -0.107 4.107 9 C -0.180 4.180 10 C 0.021 3.979 11 H 0.132 0.868 12 C 0.294 3.706 13 O -0.460 6.460 14 N -0.341 5.341 15 C 0.142 3.858 16 H 0.037 0.963 17 C -0.208 4.208 18 C -0.658 4.658 19 H 0.066 0.934 20 C -0.197 4.197 21 N -0.551 5.551 22 Si 0.885 3.115 23 H -0.204 1.204 24 H -0.202 1.202 25 H -0.179 1.179 26 O -0.236 6.236 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.167 0.833 31 H 0.141 0.859 32 H 0.169 0.831 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.244 0.756 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.363 3.458 3.491 24.854 hybrid contribution -0.942 -1.121 -0.742 1.642 sum -25.305 2.337 2.749 25.561 Atomic orbital electron populations 1.20762 0.88748 1.03735 1.03006 1.20203 0.97831 0.92599 1.01680 1.21088 0.91973 0.99339 0.98506 1.20794 0.94988 0.96116 1.06264 1.19131 0.81376 0.95038 0.99383 1.20114 0.95406 0.94195 1.06846 1.21094 0.91819 0.99163 0.98434 1.20569 0.92209 0.93517 1.04367 1.22212 0.98227 0.97440 1.00165 1.22277 0.88182 0.86075 1.01379 0.86846 1.20582 0.88071 0.82919 0.78989 1.90657 1.80490 1.31666 1.43209 1.45947 1.08047 1.22151 1.57961 1.18767 0.77767 0.95906 0.93331 0.96280 1.22306 1.00960 1.00494 0.97011 1.22129 0.93390 1.29754 1.20565 0.93392 1.26631 0.95183 1.02445 0.95409 1.70957 1.39001 1.05182 1.39929 0.83780 0.75965 0.73680 0.78028 1.20434 1.20223 1.17949 1.86023 1.16767 1.36528 1.84263 0.90541 0.90726 0.90484 0.83276 0.85870 0.83091 0.87163 0.88103 0.87066 0.91272 0.75573 0.92341 0.92864 0.94635 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 71.23 0.71 -0.33 16 2 C -0.12 -2.04 5.88 -19.88 -0.12 -2.16 16 3 C -0.09 -1.74 9.70 22.22 0.22 -1.53 16 4 C -0.16 -4.15 9.94 22.42 0.22 -3.93 16 5 C 0.10 2.70 6.47 22.52 0.15 2.84 16 6 C -0.16 -3.60 5.75 -19.75 -0.11 -3.71 16 7 C -0.09 -1.50 9.32 22.30 0.21 -1.29 16 8 C -0.07 -1.19 5.86 29.89 0.18 -1.01 16 9 C -0.14 -3.20 5.46 30.75 0.17 -3.03 16 10 C 0.08 2.42 3.21 29.98 0.10 2.51 16 11 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 12 C 0.51 20.12 7.15 87.66 0.63 20.74 16 13 O -0.58 -28.52 16.18 15.86 0.26 -28.26 16 14 N -0.69 -27.18 5.03 -446.10 -2.25 -29.42 16 15 C 0.25 11.75 2.16 44.25 0.10 11.85 16 16 H 0.02 1.02 6.15 -2.38 -0.01 1.00 16 17 C -0.15 -6.59 9.21 71.98 0.66 -5.92 16 18 C -0.62 -33.14 8.95 25.60 0.23 -32.92 16 19 H 0.05 2.66 7.96 -2.91 -0.02 2.64 16 20 C 0.01 0.34 5.19 84.65 0.44 0.78 16 21 N -0.92 -54.19 13.70 21.45 0.29 -53.89 16 22 Si 1.06 50.29 26.44 68.60 1.81 52.10 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.25 -11.22 6.15 99.48 0.61 -10.61 16 26 O -0.32 -11.14 9.47 -72.89 -0.69 -11.83 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 30 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 2.06 7.96 -2.39 -0.02 2.04 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.41 13.51 8.36 -92.71 -0.78 12.74 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 2.40 5.48 -2.39 -0.01 2.39 16 40 H 0.03 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.26 15.42 8.73 -92.71 -0.81 14.62 16 Total: -1.00 -71.61 337.42 3.32 -68.28 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.13 Total: 20.12 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 3.77 Total: -17.10 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.95 Total: -83.31 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.43 Total: -40.09 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.81 Total: 52.10 kcal Total: -71.61 3.32 -68.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279620228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.829 kcal (2) G-P(sol) polarization free energy of solvation -71.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds