Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38294 * 120.00900 * 2 1 4 4 C 1.37968 * 119.95822 * 180.02562 * 3 2 1 5 5 C 1.39151 * 120.21551 * 0.03497 * 4 3 2 6 6 C 1.38366 * 119.69568 * 359.80331 * 5 4 3 7 7 C 1.38105 * 120.01025 * 179.97438 * 2 1 3 8 8 C 1.50770 * 121.40888 * 180.26655 * 6 5 4 9 9 C 1.53077 * 109.67770 * 342.15861 * 8 6 5 10 10 C 1.53411 * 108.30021 * 48.20200 * 9 8 6 11 11 H 1.08996 * 109.67679 * 55.05551 * 10 9 8 12 12 C 1.50700 * 109.67896 * 175.57348 * 10 9 8 13 13 O 1.21282 * 119.99616 * 105.61521 * 12 10 9 14 14 N 1.34778 * 120.00188 * 285.60711 * 12 10 9 15 15 C 1.46497 * 119.99693 * 4.50718 * 14 12 10 16 16 C 1.46493 * 120.00333 * 184.50704 * 14 12 10 17 17 C 1.50705 * 109.46938 * 270.00358 * 16 14 12 18 18 H 1.07991 * 120.00192 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99932 * 179.97438 * 17 16 14 20 20 N 1.31521 * 120.00176 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00049 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47096 * 120.00019 * 21 19 17 24 24 H 1.48501 * 109.47207 * 239.99909 * 21 19 17 25 25 O 1.35856 * 118.48476 * 179.59976 * 5 4 3 26 26 H 1.08998 * 109.46917 * 270.02509 * 1 2 3 27 27 H 1.08999 * 109.46998 * 30.02334 * 1 2 3 28 28 H 1.09000 * 109.47068 * 150.02275 * 1 2 3 29 29 H 1.07993 * 120.01891 * 0.03793 * 3 2 1 30 30 H 1.08003 * 119.89314 * 180.02562 * 4 3 2 31 31 H 1.08003 * 119.83865 * 0.02562 * 7 2 1 32 32 H 1.08991 * 109.44181 * 222.09084 * 8 6 5 33 33 H 1.09006 * 109.43454 * 102.21306 * 8 6 5 34 34 H 1.09009 * 109.69494 * 288.50408 * 9 8 6 35 35 H 1.08997 * 109.73348 * 167.93093 * 9 8 6 36 36 H 1.09002 * 109.47144 * 268.00180 * 15 14 12 37 37 H 1.08994 * 109.47645 * 28.00004 * 15 14 12 38 38 H 1.09004 * 109.47393 * 148.00517 * 15 14 12 39 39 H 1.09003 * 109.47138 * 29.99753 * 16 14 12 40 40 H 1.08996 * 109.47634 * 150.00154 * 16 14 12 41 41 H 0.96998 * 120.00385 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1975 0.0000 4 6 3.5783 1.1963 -0.0005 5 6 4.2775 -0.0067 -0.0018 6 6 3.5828 -1.2033 0.0016 7 6 2.1977 -1.1959 0.0005 8 6 4.3011 -2.5289 0.0063 9 6 5.7533 -2.3299 -0.4349 10 6 6.3402 -1.1538 0.3562 11 1 6.2229 -1.3351 1.4245 12 6 7.8022 -0.9988 0.0252 13 8 8.1694 -0.0889 -0.6877 14 7 8.7017 -1.8712 0.5214 15 6 8.2490 -3.0263 1.3007 16 6 10.1321 -1.6646 0.2817 17 6 10.5339 -2.3627 -0.9920 18 1 9.7977 -2.9063 -1.5652 19 6 11.8416 -2.3074 -1.4253 20 7 12.7383 -1.6450 -0.7275 21 14 12.3399 -3.1733 -3.0037 22 1 11.1541 -3.8419 -3.5971 23 1 12.8794 -2.1783 -3.9651 24 1 13.3823 -4.1876 -2.7040 25 8 5.6355 0.0331 -0.0106 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6591 2.1331 0.0006 30 1 4.1174 2.1322 -0.0001 31 1 1.6552 -2.1298 0.0005 32 1 3.8038 -3.2135 -0.6807 33 1 4.2820 -2.9482 1.0124 34 1 5.7859 -2.1079 -1.5017 35 1 6.3273 -3.2335 -0.2301 36 1 8.2348 -2.7673 2.3594 37 1 7.2456 -3.3087 0.9822 38 1 8.9299 -3.8622 1.1403 39 1 10.3347 -0.5974 0.1906 40 1 10.7030 -2.0729 1.1156 41 1 13.6582 -1.6057 -1.0326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280606880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = -49.400927 kcal Electronic energy + Delta-G solvation = -22868.588870 eV Core-core repulsion = 19520.602203 eV Total energy + Delta-G solvation = -3347.986667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91050 -39.02704 -37.45433 -35.03412 -34.28814 -32.71619 -32.21133 -30.66490 -28.24239 -27.30075 -26.08157 -25.37044 -23.48203 -22.76818 -22.30395 -19.79522 -18.82413 -17.89612 -16.63220 -16.53003 -16.51342 -15.24295 -15.09192 -14.88701 -14.57576 -14.38388 -14.16931 -13.88788 -13.80527 -13.32356 -13.25918 -12.87894 -12.73917 -12.44391 -12.26027 -12.13707 -11.88894 -11.55295 -11.34988 -11.24714 -11.10183 -10.97507 -10.77702 -10.62276 -10.37031 -10.16853 -9.64053 -8.91390 -8.86296 -8.45830 -8.01876 -7.72753 -6.06461 -4.11239 1.23632 1.34331 2.95073 3.24754 3.28970 3.37101 3.41600 3.62465 4.09486 4.42342 4.48280 4.60215 4.66568 4.81319 4.84474 4.95672 5.08352 5.13036 5.20975 5.28214 5.35572 5.41119 5.44256 5.45830 5.58469 5.68048 5.74777 5.84181 5.87989 5.95900 6.03480 6.19159 6.21668 6.37436 6.50243 6.72689 6.96836 7.37788 7.43129 7.53595 7.89633 8.19313 8.29178 8.85240 8.99794 9.53815 11.01818 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032127 B = 0.003425 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.329241 B = 8172.609280 C = 8268.487085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.088 4.088 4 C -0.144 4.144 5 C 0.135 3.865 6 C -0.160 4.160 7 C -0.084 4.084 8 C -0.074 4.074 9 C -0.156 4.156 10 C 0.077 3.923 11 H 0.090 0.910 12 C 0.512 3.488 13 O -0.515 6.515 14 N -0.597 5.597 15 C 0.069 3.931 16 C 0.247 3.753 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.283 1.283 25 O -0.287 6.287 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.525 -1.900 5.369 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.163 4.163 5 C 0.090 3.910 6 C -0.161 4.161 7 C -0.102 4.102 8 C -0.111 4.111 9 C -0.193 4.193 10 C 0.017 3.983 11 H 0.107 0.893 12 C 0.296 3.704 13 O -0.390 6.390 14 N -0.331 5.331 15 C -0.075 4.075 16 C 0.128 3.872 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.209 1.209 25 O -0.200 6.200 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.967 -1.204 4.942 22.548 hybrid contribution 0.381 -0.732 -0.769 1.128 sum -21.586 -1.936 4.173 22.070 Atomic orbital electron populations 1.20686 0.91227 1.02469 1.01948 1.19739 0.96008 0.93057 1.03975 1.20774 0.92921 0.97689 0.99222 1.20615 0.93768 0.96573 1.05337 1.18819 0.82533 0.93421 0.96274 1.19838 0.94436 0.94309 1.07510 1.20722 0.92455 0.97663 0.99382 1.20493 0.94215 0.93972 1.02451 1.22368 0.96195 0.98883 1.01891 1.22382 0.91753 0.84824 0.99389 0.89267 1.19640 0.85704 0.83488 0.81592 1.90717 1.79894 1.32880 1.35486 1.48047 1.09093 1.23965 1.51946 1.21944 1.00400 0.90149 0.94971 1.19348 0.72464 0.98715 0.96651 1.21449 0.94330 1.32739 1.07971 0.92333 1.24942 0.96377 0.95484 0.97340 1.69940 1.02928 1.41618 1.38877 0.86429 0.78410 0.79261 0.83239 1.19791 1.20838 1.20949 1.86104 1.14850 1.35707 1.83314 0.91598 0.91786 0.91862 0.85592 0.85049 0.85993 0.89679 0.90225 0.89612 0.88199 0.93436 0.91771 0.90310 0.93803 0.94600 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.13 -1.30 5.88 -104.65 -0.62 -1.92 16 3 C -0.09 -0.96 9.70 -39.66 -0.38 -1.34 16 4 C -0.14 -1.92 9.94 -39.34 -0.39 -2.31 16 5 C 0.14 2.03 6.47 -39.20 -0.25 1.78 16 6 C -0.16 -2.02 5.75 -104.44 -0.60 -2.62 16 7 C -0.08 -0.90 9.32 -39.53 -0.37 -1.27 16 8 C -0.07 -0.79 5.86 -27.81 -0.16 -0.96 16 9 C -0.16 -2.11 5.12 -26.48 -0.14 -2.25 16 10 C 0.08 1.26 2.37 -27.67 -0.07 1.20 16 11 H 0.09 1.25 7.71 -51.93 -0.40 0.85 16 12 C 0.51 11.09 7.01 -10.98 -0.08 11.01 16 13 O -0.51 -13.81 16.19 -13.88 -0.22 -14.04 16 14 N -0.60 -12.60 2.86 -182.96 -0.52 -13.13 16 15 C 0.07 1.04 9.92 59.85 0.59 1.64 16 16 C 0.25 6.45 5.14 -5.19 -0.03 6.42 16 17 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 21 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 O -0.29 -5.19 9.50 -38.72 -0.37 -5.56 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 31 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.32 8.14 -51.92 -0.42 0.89 16 35 H 0.10 1.21 5.52 -51.93 -0.29 0.92 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.77 4.17 -51.93 -0.22 0.56 16 38 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 39 H 0.04 1.30 7.49 -51.93 -0.39 0.91 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -34.49 338.26 -8.75 -43.23 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.90 Total: -2.03 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.55 Total: -4.59 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.21 Total: -38.99 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.59 Total: -19.60 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.49 -8.75 -43.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280606880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.166 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds