Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38294 * 120.00900 * 2 1 4 4 C 1.37968 * 119.95822 * 180.02562 * 3 2 1 5 5 C 1.39151 * 120.21551 * 0.03497 * 4 3 2 6 6 C 1.38366 * 119.69568 * 359.80331 * 5 4 3 7 7 C 1.38105 * 120.01025 * 179.97438 * 2 1 3 8 8 C 1.50770 * 121.40888 * 180.26655 * 6 5 4 9 9 C 1.53077 * 109.67770 * 342.15861 * 8 6 5 10 10 C 1.53411 * 108.30021 * 48.20200 * 9 8 6 11 11 H 1.08996 * 109.67679 * 55.05551 * 10 9 8 12 12 C 1.50700 * 109.67896 * 175.57348 * 10 9 8 13 13 O 1.21282 * 119.99616 * 105.61521 * 12 10 9 14 14 N 1.34778 * 120.00188 * 285.60711 * 12 10 9 15 15 C 1.46497 * 119.99693 * 4.50718 * 14 12 10 16 16 C 1.46493 * 120.00333 * 184.50704 * 14 12 10 17 17 C 1.50705 * 109.46938 * 270.00358 * 16 14 12 18 18 H 1.07991 * 120.00192 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99932 * 179.97438 * 17 16 14 20 20 N 1.31521 * 120.00176 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00049 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47096 * 120.00019 * 21 19 17 24 24 H 1.48501 * 109.47207 * 239.99909 * 21 19 17 25 25 O 1.35856 * 118.48476 * 179.59976 * 5 4 3 26 26 H 1.08998 * 109.46917 * 270.02509 * 1 2 3 27 27 H 1.08999 * 109.46998 * 30.02334 * 1 2 3 28 28 H 1.09000 * 109.47068 * 150.02275 * 1 2 3 29 29 H 1.07993 * 120.01891 * 0.03793 * 3 2 1 30 30 H 1.08003 * 119.89314 * 180.02562 * 4 3 2 31 31 H 1.08003 * 119.83865 * 0.02562 * 7 2 1 32 32 H 1.08991 * 109.44181 * 222.09084 * 8 6 5 33 33 H 1.09006 * 109.43454 * 102.21306 * 8 6 5 34 34 H 1.09009 * 109.69494 * 288.50408 * 9 8 6 35 35 H 1.08997 * 109.73348 * 167.93093 * 9 8 6 36 36 H 1.09002 * 109.47144 * 268.00180 * 15 14 12 37 37 H 1.08994 * 109.47645 * 28.00004 * 15 14 12 38 38 H 1.09004 * 109.47393 * 148.00517 * 15 14 12 39 39 H 1.09003 * 109.47138 * 29.99753 * 16 14 12 40 40 H 1.08996 * 109.47634 * 150.00154 * 16 14 12 41 41 H 0.96998 * 120.00385 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1975 0.0000 4 6 3.5783 1.1963 -0.0005 5 6 4.2775 -0.0067 -0.0018 6 6 3.5828 -1.2033 0.0016 7 6 2.1977 -1.1959 0.0005 8 6 4.3011 -2.5289 0.0063 9 6 5.7533 -2.3299 -0.4349 10 6 6.3402 -1.1538 0.3562 11 1 6.2229 -1.3351 1.4245 12 6 7.8022 -0.9988 0.0252 13 8 8.1694 -0.0889 -0.6877 14 7 8.7017 -1.8712 0.5214 15 6 8.2490 -3.0263 1.3007 16 6 10.1321 -1.6646 0.2817 17 6 10.5339 -2.3627 -0.9920 18 1 9.7977 -2.9063 -1.5652 19 6 11.8416 -2.3074 -1.4253 20 7 12.7383 -1.6450 -0.7275 21 14 12.3399 -3.1733 -3.0037 22 1 11.1541 -3.8419 -3.5971 23 1 12.8794 -2.1783 -3.9651 24 1 13.3823 -4.1876 -2.7040 25 8 5.6355 0.0331 -0.0106 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6591 2.1331 0.0006 30 1 4.1174 2.1322 -0.0001 31 1 1.6552 -2.1298 0.0005 32 1 3.8038 -3.2135 -0.6807 33 1 4.2820 -2.9482 1.0124 34 1 5.7859 -2.1079 -1.5017 35 1 6.3273 -3.2335 -0.2301 36 1 8.2348 -2.7673 2.3594 37 1 7.2456 -3.3087 0.9822 38 1 8.9299 -3.8622 1.1403 39 1 10.3347 -0.5974 0.1906 40 1 10.7030 -2.0729 1.1156 41 1 13.6582 -1.6057 -1.0326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280606880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = -70.370880 kcal Electronic energy + Delta-G solvation = -22869.498195 eV Core-core repulsion = 19520.602203 eV Total energy + Delta-G solvation = -3348.895992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.05656 -40.47776 -38.59581 -36.76686 -35.46808 -34.67430 -33.16374 -31.74373 -29.90657 -28.48017 -27.38697 -26.61389 -24.85331 -24.24672 -23.27437 -20.91550 -20.27429 -19.02542 -18.70325 -18.08203 -17.66052 -16.97430 -16.31235 -16.27537 -15.96514 -15.55268 -15.29891 -14.91920 -14.82187 -14.56585 -14.28389 -14.18847 -13.90683 -13.80050 -13.59815 -13.40172 -13.19125 -12.98351 -12.80988 -12.60536 -12.45219 -12.27052 -12.23073 -12.02645 -11.87632 -11.68288 -11.36533 -10.67260 -10.61063 -9.72709 -9.52923 -8.96699 -8.25153 -6.39716 0.36733 0.43218 1.34934 1.38118 1.49304 1.53686 1.71598 2.36420 2.64873 2.78973 3.04960 3.39878 3.46886 3.70056 3.80852 3.84329 4.03927 4.16046 4.19854 4.33360 4.42969 4.54401 4.59999 4.66686 4.74081 4.81716 4.92700 4.92914 4.95986 4.98444 5.08793 5.16550 5.17019 5.20716 5.37757 5.47617 5.50424 5.69291 5.76031 5.91145 6.01573 6.41928 6.61943 6.69493 7.20513 7.35248 8.82658 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032127 B = 0.003425 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.329241 B = 8172.609280 C = 8268.487085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.165 4.165 5 C 0.094 3.906 6 C -0.164 4.164 7 C -0.085 4.085 8 C -0.067 4.067 9 C -0.150 4.150 10 C 0.087 3.913 11 H 0.120 0.880 12 C 0.501 3.499 13 O -0.585 6.585 14 N -0.599 5.599 15 C 0.061 3.939 16 C 0.259 3.741 17 C -0.542 4.542 18 H 0.055 0.945 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.266 1.266 25 O -0.327 6.327 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.149 0.851 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.077 0.923 39 H -0.006 1.006 40 H 0.034 0.966 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.777 -4.605 5.688 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.184 4.184 5 C 0.050 3.950 6 C -0.165 4.165 7 C -0.103 4.103 8 C -0.103 4.103 9 C -0.188 4.188 10 C 0.028 3.972 11 H 0.137 0.863 12 C 0.288 3.712 13 O -0.465 6.465 14 N -0.331 5.331 15 C -0.080 4.080 16 C 0.138 3.862 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.191 1.191 25 O -0.241 6.241 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.167 0.833 30 H 0.138 0.862 31 H 0.172 0.828 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.013 0.987 40 H 0.052 0.948 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.261 -3.955 5.303 26.113 hybrid contribution 1.303 0.188 -0.826 1.554 sum -23.958 -3.767 4.477 24.662 Atomic orbital electron populations 1.20757 0.88667 1.03655 1.03103 1.20207 0.97855 0.92564 1.01710 1.21073 0.91850 0.99407 0.98553 1.20785 0.95072 0.96050 1.06478 1.19168 0.81287 0.95197 0.99345 1.20125 0.95444 0.94135 1.06809 1.21102 0.91687 0.99208 0.98288 1.20582 0.91541 0.93482 1.04734 1.22364 0.98662 0.97842 0.99885 1.22280 0.87774 0.85855 1.01340 0.86252 1.20687 0.88139 0.82187 0.80211 1.90665 1.81505 1.35632 1.38648 1.48035 1.07209 1.25718 1.52175 1.22314 1.02120 0.87744 0.95821 1.18842 0.75846 0.95385 0.96099 1.21709 0.94631 1.32901 1.08791 0.92683 1.25880 0.96373 0.96143 1.00860 1.70056 1.03409 1.42724 1.40681 0.85345 0.78460 0.78252 0.78608 1.19012 1.21005 1.19103 1.86032 1.16968 1.36628 1.84465 0.90304 0.90911 0.90483 0.83336 0.86155 0.82809 0.87104 0.87209 0.92266 0.86491 0.90597 0.88076 0.90465 0.98745 0.94836 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.23 0.71 -0.36 16 2 C -0.12 -2.13 5.88 -19.88 -0.12 -2.25 16 3 C -0.09 -1.85 9.70 22.22 0.22 -1.63 16 4 C -0.17 -4.50 9.94 22.43 0.22 -4.28 16 5 C 0.09 2.86 6.47 22.52 0.15 3.00 16 6 C -0.16 -3.76 5.75 -19.75 -0.11 -3.87 16 7 C -0.09 -1.50 9.32 22.30 0.21 -1.30 16 8 C -0.07 -1.18 5.86 29.90 0.18 -1.00 16 9 C -0.15 -3.81 5.12 30.76 0.16 -3.65 16 10 C 0.09 2.86 2.37 29.99 0.07 2.93 16 11 H 0.12 3.13 7.71 -2.39 -0.02 3.11 16 12 C 0.50 22.65 7.01 87.66 0.61 23.26 16 13 O -0.58 -33.80 16.19 15.55 0.25 -33.55 16 14 N -0.60 -25.90 2.86 -851.15 -2.43 -28.33 16 15 C 0.06 1.74 9.92 127.77 1.27 3.00 16 16 C 0.26 14.23 5.14 85.64 0.44 14.67 16 17 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 18 H 0.05 3.17 7.81 -2.92 -0.02 3.15 16 19 C 0.01 0.37 5.46 84.65 0.46 0.83 16 20 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 21 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 O -0.33 -12.36 9.50 -73.35 -0.70 -13.05 16 26 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 28 H 0.08 0.61 8.09 -2.39 -0.02 0.60 16 29 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.12 2.48 5.52 -2.39 -0.01 2.47 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 2.10 4.17 -2.39 -0.01 2.09 16 38 H 0.08 2.24 8.09 -2.38 -0.02 2.23 16 39 H -0.01 -0.36 7.49 -2.39 -0.02 -0.38 16 40 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -81.79 338.26 5.16 -76.63 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.02 Total: 9.43 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.70 Total: -2.00 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.15 Total: -84.86 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.44 Total: -46.60 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -81.79 5.16 -76.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280606880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.259 kcal (2) G-P(sol) polarization free energy of solvation -81.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds