Wall clock time and date at job start Tue Mar 31 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38287 * 120.00981 * 2 1 4 4 C 1.37968 * 119.95561 * 179.97438 * 3 2 1 5 5 C 1.39146 * 120.21964 * 0.02562 * 4 3 2 6 6 C 1.38371 * 119.69041 * 0.13038 * 5 4 3 7 7 C 1.38105 * 120.00472 * 180.02562 * 2 1 3 8 8 C 1.50776 * 121.40620 * 179.75785 * 6 5 4 9 9 C 1.53069 * 109.67924 * 17.70467 * 8 6 5 10 10 C 1.53412 * 108.29221 * 311.80776 * 9 8 6 11 11 H 1.08997 * 109.68474 * 305.03257 * 10 9 8 12 12 C 1.50692 * 109.68547 * 184.46501 * 10 9 8 13 13 O 1.21281 * 120.00617 * 253.80840 * 12 10 9 14 14 N 1.34780 * 120.00069 * 73.81326 * 12 10 9 15 15 C 1.46507 * 119.99420 * 4.25339 * 14 12 10 16 16 C 1.46496 * 120.00356 * 184.25325 * 14 12 10 17 17 C 1.50700 * 109.47186 * 89.99914 * 16 14 12 18 18 H 1.08001 * 119.99578 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99957 * 180.02562 * 17 16 14 20 20 N 1.31519 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99958 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46892 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47198 * 120.00085 * 21 19 17 24 24 H 1.48497 * 109.46980 * 239.99917 * 21 19 17 25 25 O 1.35850 * 118.49796 * 180.17922 * 5 4 3 26 26 H 1.08994 * 109.47198 * 89.99536 * 1 2 3 27 27 H 1.09000 * 109.47399 * 209.99606 * 1 2 3 28 28 H 1.09000 * 109.47083 * 329.99837 * 1 2 3 29 29 H 1.07998 * 120.01946 * 359.96977 * 3 2 1 30 30 H 1.08007 * 119.88809 * 179.97438 * 4 3 2 31 31 H 1.07995 * 119.84288 * 359.97438 * 7 2 1 32 32 H 1.09003 * 109.43607 * 257.63927 * 8 6 5 33 33 H 1.08998 * 109.43437 * 137.77140 * 8 6 5 34 34 H 1.08996 * 109.69778 * 71.50654 * 9 8 6 35 35 H 1.08994 * 109.69841 * 192.10959 * 9 8 6 36 36 H 1.09001 * 109.47552 * 84.57541 * 15 14 12 37 37 H 1.09000 * 109.46689 * 204.57215 * 15 14 12 38 38 H 1.08996 * 109.47175 * 324.56643 * 15 14 12 39 39 H 1.09004 * 109.47143 * 209.99636 * 16 14 12 40 40 H 1.08993 * 109.47111 * 329.99887 * 16 14 12 41 41 H 0.96996 * 119.99665 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1975 0.0000 4 6 3.5784 1.1962 0.0005 5 6 4.2776 -0.0068 0.0005 6 6 3.5827 -1.2034 -0.0027 7 6 2.1977 -1.1960 -0.0005 8 6 4.3010 -2.5291 -0.0083 9 6 5.7543 -2.3297 0.4288 10 6 6.3389 -1.1542 -0.3648 11 1 6.2172 -1.3355 -1.4327 12 6 7.8020 -0.9993 -0.0389 13 8 8.1732 -0.0831 0.6637 14 7 8.6982 -1.8790 -0.5283 15 6 8.2637 -2.9301 -1.4518 16 6 10.1067 -1.7841 -0.1369 17 6 10.3422 -2.6159 1.0975 18 1 9.5244 -3.1610 1.5454 19 6 11.6015 -2.6809 1.6551 20 7 12.5971 -2.0167 1.1100 21 14 11.8932 -3.7113 3.1857 22 1 10.6202 -4.3545 3.5993 23 1 12.9039 -4.7589 2.8919 24 1 12.3875 -2.8402 4.2820 25 8 5.6355 0.0327 0.0048 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6592 2.1331 -0.0005 30 1 4.1174 2.1321 0.0001 31 1 1.6552 -2.1298 -0.0005 32 1 4.2790 -2.9493 -1.0138 33 1 3.8054 -3.2130 0.6808 34 1 5.7900 -2.1070 1.4952 35 1 6.3273 -3.2336 0.2223 36 1 8.2430 -2.5355 -2.4677 37 1 8.9591 -3.7679 -1.4017 38 1 7.2660 -3.2689 -1.1731 39 1 10.7349 -2.1521 -0.9482 40 1 10.3563 -0.7441 0.0728 41 1 13.4831 -2.0628 1.5021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280606883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:47 Heat of formation + Delta-G solvation = -52.596204 kcal Electronic energy + Delta-G solvation = -22890.079815 eV Core-core repulsion = 19541.954590 eV Total energy + Delta-G solvation = -3348.125225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89529 -39.02134 -37.45244 -35.01494 -34.28015 -32.71901 -32.21113 -30.64325 -28.26278 -27.29053 -26.07024 -25.35867 -23.48920 -22.76453 -22.29571 -19.79024 -18.79080 -17.88988 -16.65561 -16.49811 -16.48518 -15.24963 -15.09966 -14.90954 -14.55366 -14.36583 -14.16416 -13.88037 -13.81200 -13.31234 -13.24620 -12.88866 -12.66159 -12.42235 -12.24740 -12.15002 -11.91005 -11.58386 -11.33361 -11.24549 -11.13029 -10.95790 -10.81872 -10.62531 -10.37864 -10.19003 -9.65646 -8.92145 -8.85759 -8.47195 -8.01139 -7.73087 -6.07887 -4.13195 1.24359 1.34998 2.97061 3.23031 3.27792 3.35995 3.40095 3.63296 4.09748 4.41005 4.50079 4.61875 4.67767 4.82232 4.86764 4.97121 5.09392 5.12778 5.23876 5.26870 5.36565 5.41662 5.45425 5.50422 5.59213 5.69062 5.75436 5.82367 5.89341 5.96538 6.04593 6.18541 6.22018 6.38320 6.50876 6.73298 6.96653 7.39055 7.43117 7.53957 7.88324 8.17925 8.28571 8.83637 8.98797 9.52109 11.00290 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.003499 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.532321 B = 7999.498352 C = 8123.699671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.088 4.088 4 C -0.145 4.145 5 C 0.135 3.865 6 C -0.160 4.160 7 C -0.084 4.084 8 C -0.074 4.074 9 C -0.152 4.152 10 C 0.077 3.923 11 H 0.089 0.911 12 C 0.514 3.486 13 O -0.518 6.518 14 N -0.597 5.597 15 C 0.073 3.927 16 C 0.245 3.755 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.893 5.893 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 O -0.288 6.288 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.004 -0.962 -6.221 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.163 4.163 5 C 0.090 3.910 6 C -0.161 4.161 7 C -0.102 4.102 8 C -0.111 4.111 9 C -0.190 4.190 10 C 0.017 3.983 11 H 0.107 0.893 12 C 0.298 3.702 13 O -0.393 6.393 14 N -0.330 5.330 15 C -0.070 4.070 16 C 0.127 3.873 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 O -0.200 6.200 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.441 -0.276 -5.777 22.207 hybrid contribution 0.260 -0.850 0.763 1.171 sum -21.180 -1.126 -5.014 21.795 Atomic orbital electron populations 1.20687 0.91231 1.02468 1.01941 1.19738 0.96004 0.93057 1.03988 1.20770 0.92921 0.97682 0.99246 1.20610 0.93765 0.96560 1.05378 1.18816 0.82533 0.93414 0.96271 1.19846 0.94436 0.94325 1.07462 1.20722 0.92461 0.97663 0.99372 1.20497 0.94244 0.93948 1.02452 1.22266 0.96066 0.98778 1.01841 1.22381 0.91757 0.84843 0.99365 0.89331 1.19621 0.85759 0.83292 0.81519 1.90706 1.79801 1.31881 1.36920 1.48048 1.10821 1.29073 1.45086 1.21851 1.00493 0.92206 0.92499 1.19368 0.73312 0.99132 0.95508 1.21460 0.94856 1.29125 1.11333 0.92332 1.24943 0.95897 0.95807 0.97446 1.69942 1.01061 1.41676 1.40535 0.86430 0.78132 0.79885 0.82902 1.19787 1.20927 1.20817 1.86100 1.14876 1.35758 1.83295 0.91605 0.91862 0.91791 0.85599 0.85064 0.85994 0.90246 0.89676 0.89615 0.88437 0.93474 0.90108 0.92284 0.94617 0.93584 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.13 -1.31 5.88 -104.65 -0.62 -1.93 16 3 C -0.09 -0.96 9.70 -39.66 -0.38 -1.35 16 4 C -0.14 -1.93 9.94 -39.34 -0.39 -2.32 16 5 C 0.14 2.05 6.47 -39.20 -0.25 1.79 16 6 C -0.16 -2.04 5.75 -104.44 -0.60 -2.64 16 7 C -0.08 -0.91 9.32 -39.53 -0.37 -1.28 16 8 C -0.07 -0.82 5.86 -27.81 -0.16 -0.98 16 9 C -0.15 -2.12 5.14 -26.48 -0.14 -2.25 16 10 C 0.08 1.27 2.36 -27.67 -0.07 1.21 16 11 H 0.09 1.24 7.51 -51.93 -0.39 0.85 16 12 C 0.51 11.15 7.00 -10.99 -0.08 11.08 16 13 O -0.52 -13.86 16.12 -13.91 -0.22 -14.08 16 14 N -0.60 -12.59 2.86 -182.96 -0.52 -13.11 16 15 C 0.07 1.11 9.82 59.85 0.59 1.70 16 16 C 0.25 6.40 5.17 -5.20 -0.03 6.37 16 17 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 21 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 O -0.29 -5.22 9.49 -38.74 -0.37 -5.59 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.10 1.24 5.98 -51.93 -0.31 0.93 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 38 H 0.06 0.72 4.69 -51.93 -0.24 0.48 16 39 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 40 H 0.05 1.36 7.37 -51.93 -0.38 0.98 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -34.23 338.68 -8.78 -43.01 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.93 Total: -1.77 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.55 Total: -4.53 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.21 Total: -38.85 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.59 Total: -19.67 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.23 -8.78 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280606883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.589 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds