Wall clock time and date at job start Tue Mar 31 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38287 * 120.00981 * 2 1 4 4 C 1.37968 * 119.95561 * 179.97438 * 3 2 1 5 5 C 1.39146 * 120.21964 * 0.02562 * 4 3 2 6 6 C 1.38371 * 119.69041 * 0.13038 * 5 4 3 7 7 C 1.38105 * 120.00472 * 180.02562 * 2 1 3 8 8 C 1.50776 * 121.40620 * 179.75785 * 6 5 4 9 9 C 1.53069 * 109.67924 * 17.70467 * 8 6 5 10 10 C 1.53412 * 108.29221 * 311.80776 * 9 8 6 11 11 H 1.08997 * 109.68474 * 305.03257 * 10 9 8 12 12 C 1.50692 * 109.68547 * 184.46501 * 10 9 8 13 13 O 1.21281 * 120.00617 * 253.80840 * 12 10 9 14 14 N 1.34780 * 120.00069 * 73.81326 * 12 10 9 15 15 C 1.46507 * 119.99420 * 4.25339 * 14 12 10 16 16 C 1.46496 * 120.00356 * 184.25325 * 14 12 10 17 17 C 1.50700 * 109.47186 * 89.99914 * 16 14 12 18 18 H 1.08001 * 119.99578 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99957 * 180.02562 * 17 16 14 20 20 N 1.31519 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99958 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46892 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47198 * 120.00085 * 21 19 17 24 24 H 1.48497 * 109.46980 * 239.99917 * 21 19 17 25 25 O 1.35850 * 118.49796 * 180.17922 * 5 4 3 26 26 H 1.08994 * 109.47198 * 89.99536 * 1 2 3 27 27 H 1.09000 * 109.47399 * 209.99606 * 1 2 3 28 28 H 1.09000 * 109.47083 * 329.99837 * 1 2 3 29 29 H 1.07998 * 120.01946 * 359.96977 * 3 2 1 30 30 H 1.08007 * 119.88809 * 179.97438 * 4 3 2 31 31 H 1.07995 * 119.84288 * 359.97438 * 7 2 1 32 32 H 1.09003 * 109.43607 * 257.63927 * 8 6 5 33 33 H 1.08998 * 109.43437 * 137.77140 * 8 6 5 34 34 H 1.08996 * 109.69778 * 71.50654 * 9 8 6 35 35 H 1.08994 * 109.69841 * 192.10959 * 9 8 6 36 36 H 1.09001 * 109.47552 * 84.57541 * 15 14 12 37 37 H 1.09000 * 109.46689 * 204.57215 * 15 14 12 38 38 H 1.08996 * 109.47175 * 324.56643 * 15 14 12 39 39 H 1.09004 * 109.47143 * 209.99636 * 16 14 12 40 40 H 1.08993 * 109.47111 * 329.99887 * 16 14 12 41 41 H 0.96996 * 119.99665 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1975 0.0000 4 6 3.5784 1.1962 0.0005 5 6 4.2776 -0.0068 0.0005 6 6 3.5827 -1.2034 -0.0027 7 6 2.1977 -1.1960 -0.0005 8 6 4.3010 -2.5291 -0.0083 9 6 5.7543 -2.3297 0.4288 10 6 6.3389 -1.1542 -0.3648 11 1 6.2172 -1.3355 -1.4327 12 6 7.8020 -0.9993 -0.0389 13 8 8.1732 -0.0831 0.6637 14 7 8.6982 -1.8790 -0.5283 15 6 8.2637 -2.9301 -1.4518 16 6 10.1067 -1.7841 -0.1369 17 6 10.3422 -2.6159 1.0975 18 1 9.5244 -3.1610 1.5454 19 6 11.6015 -2.6809 1.6551 20 7 12.5971 -2.0167 1.1100 21 14 11.8932 -3.7113 3.1857 22 1 10.6202 -4.3545 3.5993 23 1 12.9039 -4.7589 2.8919 24 1 12.3875 -2.8402 4.2820 25 8 5.6355 0.0327 0.0048 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6592 2.1331 -0.0005 30 1 4.1174 2.1321 0.0001 31 1 1.6552 -2.1298 -0.0005 32 1 4.2790 -2.9493 -1.0138 33 1 3.8054 -3.2130 0.6808 34 1 5.7900 -2.1070 1.4952 35 1 6.3273 -3.2336 0.2223 36 1 8.2430 -2.5355 -2.4677 37 1 8.9591 -3.7679 -1.4017 38 1 7.2660 -3.2689 -1.1731 39 1 10.7349 -2.1521 -0.9482 40 1 10.3563 -0.7441 0.0728 41 1 13.4831 -2.0628 1.5021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280606883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:47 Heat of formation + Delta-G solvation = -73.269878 kcal Electronic energy + Delta-G solvation = -22890.976292 eV Core-core repulsion = 19541.954590 eV Total energy + Delta-G solvation = -3349.021702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04844 -40.47907 -38.59704 -36.76055 -35.44979 -34.68283 -33.16120 -31.72441 -29.93721 -28.46410 -27.37907 -26.61361 -24.86159 -24.24360 -23.27337 -20.92753 -20.23885 -19.02752 -18.69685 -18.07610 -17.64205 -16.97006 -16.38018 -16.25914 -15.95798 -15.52953 -15.30740 -14.88024 -14.83358 -14.57767 -14.26322 -14.17736 -13.90618 -13.77181 -13.58223 -13.39042 -13.19883 -13.01089 -12.81814 -12.59196 -12.49274 -12.27395 -12.22925 -12.04769 -11.88620 -11.69018 -11.38426 -10.67345 -10.62193 -9.72756 -9.52926 -8.96588 -8.25164 -6.40235 0.36747 0.43290 1.35636 1.38560 1.49672 1.55890 1.69181 2.36367 2.64852 2.78959 3.05096 3.40439 3.47899 3.70490 3.81037 3.83444 4.04474 4.19274 4.20237 4.33802 4.42777 4.54296 4.59732 4.64900 4.74275 4.82178 4.92160 4.92686 4.95239 4.98050 5.07374 5.16484 5.18184 5.20894 5.37786 5.47674 5.50248 5.69323 5.76391 5.91116 6.01199 6.41692 6.61582 6.69322 7.19892 7.34863 8.82722 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.003499 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.532321 B = 7999.498352 C = 8123.699671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.165 4.165 5 C 0.095 3.905 6 C -0.164 4.164 7 C -0.085 4.085 8 C -0.067 4.067 9 C -0.147 4.147 10 C 0.087 3.913 11 H 0.121 0.879 12 C 0.502 3.498 13 O -0.587 6.587 14 N -0.599 5.599 15 C 0.065 3.935 16 C 0.258 3.742 17 C -0.544 4.544 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.284 1.284 25 O -0.326 6.326 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.121 0.879 31 H 0.154 0.846 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.032 0.968 40 H -0.004 1.004 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.400 -3.620 -6.670 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.183 4.183 5 C 0.050 3.950 6 C -0.165 4.165 7 C -0.103 4.103 8 C -0.103 4.103 9 C -0.184 4.184 10 C 0.028 3.972 11 H 0.138 0.862 12 C 0.290 3.710 13 O -0.467 6.467 14 N -0.331 5.331 15 C -0.076 4.076 16 C 0.137 3.863 17 C -0.582 4.582 18 H 0.076 0.924 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.794 3.206 22 H -0.188 1.188 23 H -0.192 1.192 24 H -0.210 1.210 25 O -0.241 6.241 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.167 0.833 30 H 0.139 0.861 31 H 0.171 0.829 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.050 0.950 40 H 0.014 0.986 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.878 -2.977 -6.272 25.829 hybrid contribution 1.234 0.062 0.859 1.505 sum -23.644 -2.915 -5.413 24.430 Atomic orbital electron populations 1.20758 0.88665 1.03648 1.03110 1.20205 0.97854 0.92558 1.01715 1.21075 0.91856 0.99397 0.98527 1.20784 0.95060 0.96036 1.06454 1.19166 0.81295 0.95181 0.99330 1.20119 0.95447 0.94112 1.06854 1.21096 0.91681 0.99214 0.98312 1.20576 0.91502 0.93525 1.04710 1.22262 0.98605 0.97784 0.99783 1.22280 0.87807 0.85769 1.01367 0.86168 1.20655 0.88162 0.82026 0.80191 1.90656 1.81363 1.34645 1.40019 1.48032 1.08975 1.30445 1.45632 1.22221 1.02225 0.90575 0.92597 1.18860 0.76531 0.95771 0.95142 1.21729 0.95084 1.29273 1.12119 0.92405 1.25894 0.95612 0.97003 1.00741 1.70064 1.01614 1.42988 1.42192 0.85331 0.78561 0.78314 0.78387 1.18828 1.19202 1.21035 1.86029 1.16980 1.36622 1.84445 0.90290 0.90520 0.90889 0.83290 0.86087 0.82867 0.87213 0.87231 0.92433 0.86969 0.90643 0.90193 0.88607 0.94976 0.98634 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.37 16 2 C -0.12 -2.14 5.88 -19.88 -0.12 -2.26 16 3 C -0.09 -1.84 9.70 22.22 0.22 -1.62 16 4 C -0.16 -4.48 9.94 22.42 0.22 -4.26 16 5 C 0.09 2.88 6.47 22.52 0.15 3.02 16 6 C -0.16 -3.81 5.75 -19.74 -0.11 -3.93 16 7 C -0.09 -1.53 9.32 22.30 0.21 -1.32 16 8 C -0.07 -1.22 5.86 29.90 0.18 -1.04 16 9 C -0.15 -3.86 5.14 30.76 0.16 -3.70 16 10 C 0.09 2.89 2.36 29.98 0.07 2.96 16 11 H 0.12 3.14 7.51 -2.39 -0.02 3.12 16 12 C 0.50 22.75 7.00 87.65 0.61 23.36 16 13 O -0.59 -33.85 16.12 15.58 0.25 -33.60 16 14 N -0.60 -25.86 2.86 -851.14 -2.43 -28.29 16 15 C 0.07 1.85 9.82 127.77 1.25 3.11 16 16 C 0.26 14.13 5.17 85.63 0.44 14.57 16 17 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 18 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 19 C 0.01 0.38 5.46 84.65 0.46 0.84 16 20 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 21 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 25 O -0.33 -12.37 9.49 -73.25 -0.70 -13.06 16 26 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.62 8.09 -2.39 -0.02 0.61 16 28 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 2.55 5.98 -2.39 -0.01 2.53 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 2.31 8.03 -2.39 -0.02 2.29 16 38 H 0.10 2.01 4.69 -2.39 -0.01 2.00 16 39 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 40 H 0.00 -0.29 7.37 -2.39 -0.02 -0.31 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -81.10 338.68 5.15 -75.96 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.02 Total: 10.17 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 4.69 Total: -1.78 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -2.15 Total: -84.65 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.44 Total: -46.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -81.10 5.15 -75.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280606883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.685 kcal (2) G-P(sol) polarization free energy of solvation -81.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds