Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47155 * 353.79584 * 3 2 1 5 5 C 1.36935 * 120.00370 * 275.88400 * 4 3 2 6 6 H 1.07996 * 120.00239 * 175.81871 * 5 4 3 7 7 C 1.38816 * 120.00025 * 355.82981 * 5 4 3 8 8 N 1.31615 * 119.99904 * 33.97732 * 7 5 4 9 9 Si 1.86802 * 119.99805 * 213.98783 * 7 5 4 10 10 H 1.48496 * 109.47346 * 84.99250 * 9 7 5 11 11 H 1.48497 * 109.46790 * 204.99437 * 9 7 5 12 12 H 1.48502 * 109.47058 * 324.98954 * 9 7 5 13 13 C 1.46503 * 119.99699 * 95.88601 * 4 3 2 14 14 C 1.52998 * 109.47098 * 269.99924 * 13 4 3 15 15 H 1.09002 * 109.47370 * 305.00148 * 14 13 4 16 16 O 1.42903 * 109.47262 * 65.00357 * 14 13 4 17 17 C 1.53009 * 109.47050 * 184.99928 * 14 13 4 18 18 O 1.42897 * 109.47029 * 174.99998 * 17 14 13 19 19 C 1.35898 * 116.99884 * 180.02562 * 18 17 14 20 20 C 1.38756 * 120.05716 * 359.72907 * 19 18 17 21 21 C 1.38120 * 119.94082 * 179.70010 * 20 19 18 22 22 C 1.38278 * 120.06006 * 0.59431 * 21 20 19 23 23 C 1.38252 * 120.11080 * 359.68097 * 22 21 20 24 24 C 1.50702 * 119.97018 * 179.97438 * 23 22 21 25 25 C 1.38159 * 120.05291 * 0.02562 * 23 22 21 26 26 H 4.40638 * 5.51369 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47287 * 233.80289 * 3 2 1 28 28 H 1.08998 * 109.47490 * 113.79920 * 3 2 1 29 29 H 0.97000 * 119.99824 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.47041 * 150.00259 * 13 4 3 31 31 H 1.09002 * 109.47147 * 30.00398 * 13 4 3 32 32 H 0.96700 * 113.99858 * 59.99079 * 16 14 13 33 33 H 1.08995 * 109.47153 * 295.00510 * 17 14 13 34 34 H 1.08998 * 109.46825 * 55.00356 * 17 14 13 35 35 H 1.08001 * 120.02386 * 359.97431 * 20 19 18 36 36 H 1.08003 * 119.96722 * 180.29847 * 21 20 19 37 37 H 1.08004 * 119.95116 * 179.70001 * 22 21 20 38 38 H 1.08997 * 109.46732 * 270.01890 * 24 23 22 39 39 H 1.08996 * 109.47371 * 30.02173 * 24 23 22 40 40 H 1.09002 * 109.46578 * 150.02457 * 24 23 22 41 41 H 1.08002 * 120.02644 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3723 0.1493 5 6 3.2488 -1.9268 1.3961 6 1 3.5445 -2.9600 1.5026 7 6 2.9840 -1.1610 2.5232 8 7 2.0522 -0.2323 2.4837 9 14 3.9504 -1.4484 4.0958 10 1 5.2190 -0.6782 4.0450 11 1 3.1453 -1.0000 5.2603 12 1 4.2549 -2.8954 4.2322 13 6 3.5021 -2.1519 -1.0355 14 6 2.2773 -2.9154 -1.5433 15 1 1.8655 -3.5203 -0.7354 16 8 1.2896 -1.9860 -1.9936 17 6 2.6881 -3.8249 -2.7031 18 8 1.5715 -4.6230 -3.1010 19 6 1.7689 -5.4923 -4.1268 20 6 3.0103 -5.5715 -4.7416 21 6 3.2099 -6.4602 -5.7798 22 6 2.1707 -7.2620 -6.2148 23 6 0.9312 -7.1810 -5.6076 24 6 -0.1993 -8.0559 -6.0846 25 6 0.7281 -6.2979 -4.5647 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0091 0.6077 0.8293 28 1 3.0092 0.4155 -0.9402 29 1 1.8669 0.3026 3.2714 30 1 4.2892 -2.8596 -0.7751 31 1 3.8608 -1.4803 -1.8155 32 1 1.5876 -1.4133 -2.7135 33 1 3.0169 -3.2149 -3.5444 34 1 3.5036 -4.4741 -2.3845 35 1 3.8208 -4.9418 -4.4056 36 1 4.1774 -6.5256 -6.2555 37 1 2.3274 -7.9529 -7.0300 38 1 -0.7521 -7.5395 -6.8693 39 1 0.2043 -8.9888 -6.4781 40 1 -0.8679 -8.2720 -5.2512 41 1 -0.2402 -6.2353 -4.0904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281402364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = 23.045968 kcal Electronic energy + Delta-G solvation = -22392.992708 eV Core-core repulsion = 19048.147574 eV Total energy + Delta-G solvation = -3344.845134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.14878 -38.10815 -36.88159 -35.09836 -32.60801 -31.63761 -31.38446 -30.55658 -29.09443 -27.12614 -26.14489 -25.56957 -22.66348 -22.41146 -20.89472 -20.70041 -17.73938 -17.52450 -16.68101 -16.16585 -16.01497 -15.97856 -15.29585 -14.77701 -14.39959 -14.30518 -13.97442 -13.71874 -13.45246 -13.29490 -13.06529 -12.89149 -12.42567 -12.23316 -12.01735 -11.64380 -11.51400 -11.36787 -11.00425 -10.93517 -10.80560 -10.67198 -10.34227 -10.29875 -9.96057 -9.64909 -8.87789 -8.71765 -8.59374 -8.17607 -8.14891 -7.15318 -5.88727 -3.09973 1.23266 1.41090 3.25676 3.38802 3.47916 3.48236 3.68543 4.29979 4.56828 4.68995 4.70118 4.72107 4.90473 4.97545 5.07182 5.11560 5.21366 5.24892 5.30581 5.37793 5.41018 5.52459 5.59686 5.73715 5.76151 5.86039 5.93711 5.99054 6.07380 6.28035 6.36027 6.39203 6.48880 6.63673 6.70653 6.74876 7.37097 7.51728 7.55769 7.77957 8.17418 8.27281 9.07002 9.45415 9.75371 10.18323 11.16078 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.003291 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.381636 B = 8505.050447 C = 8911.904712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.087 4.087 3 C 0.265 3.735 4 N -0.579 5.579 5 C -0.278 4.278 6 H 0.080 0.920 7 C 0.014 3.986 8 N -0.869 5.869 9 Si 0.884 3.116 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.128 3.872 14 C 0.082 3.918 15 H 0.104 0.896 16 O -0.532 6.532 17 C 0.028 3.972 18 O -0.302 6.302 19 C 0.141 3.859 20 C -0.219 4.219 21 C -0.077 4.077 22 C -0.168 4.168 23 C -0.050 4.050 24 C -0.114 4.114 25 C -0.158 4.158 26 H 0.184 0.816 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.255 0.745 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.356 0.644 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 -9.688 -17.025 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.090 4.090 3 C 0.141 3.859 4 N -0.298 5.298 5 C -0.405 4.405 6 H 0.098 0.902 7 C -0.186 4.186 8 N -0.511 5.511 9 Si 0.713 3.287 10 H -0.214 1.214 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.000 4.000 14 C 0.019 3.981 15 H 0.122 0.878 16 O -0.334 6.334 17 C -0.048 4.048 18 O -0.214 6.214 19 C 0.094 3.906 20 C -0.238 4.238 21 C -0.095 4.095 22 C -0.187 4.187 23 C -0.050 4.050 24 C -0.171 4.171 25 C -0.177 4.177 26 H 0.201 0.799 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.098 -9.812 -16.257 19.021 hybrid contribution 0.644 -0.041 0.513 0.825 sum 1.742 -9.853 -15.744 18.655 Atomic orbital electron populations 1.23978 0.95153 1.04394 1.07910 1.23892 0.94869 0.96401 0.93805 1.18117 0.83341 0.86413 0.98077 1.44324 1.73436 1.10569 1.01432 1.19148 1.42477 0.96836 0.82067 0.90213 1.24763 0.97675 0.98590 0.97601 1.70365 1.26237 1.25200 1.29270 0.86563 0.80954 0.77870 0.83293 1.21355 1.22065 1.20621 1.21407 0.93980 0.94551 0.90102 1.23135 0.93160 0.88943 0.92831 0.87820 1.86820 1.39892 1.50952 1.55712 1.23903 0.88408 0.93606 0.98901 1.86251 1.38570 1.49523 1.47093 1.19166 0.93513 0.89972 0.87913 1.21287 0.97065 1.04282 1.01122 1.20898 0.98701 0.94477 0.95455 1.20872 0.93065 1.02476 1.02245 1.19689 0.95240 0.95657 0.94440 1.20800 0.96266 0.98354 1.01643 1.20336 0.98780 0.98663 0.99926 0.79891 0.88685 0.94744 0.93432 0.92016 0.93407 0.79969 0.92305 0.91594 0.85512 0.86009 0.86247 0.90981 0.91442 0.91326 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.10 19.05 29.55 0.56 -6.54 16 2 C -0.09 -2.15 9.80 -37.12 -0.36 -2.51 16 3 C 0.27 6.19 5.40 -6.83 -0.04 6.15 16 4 N -0.58 -13.54 2.47 -176.57 -0.44 -13.98 16 5 C -0.28 -7.31 9.60 -15.06 -0.14 -7.45 16 6 H 0.08 2.07 8.02 -52.49 -0.42 1.65 16 7 C 0.01 0.38 4.87 -17.43 -0.08 0.29 16 8 N -0.87 -24.52 9.35 55.49 0.52 -24.00 16 9 Si 0.88 21.09 29.67 -169.99 -5.04 16.05 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.13 2.33 5.36 -4.04 -0.02 2.31 16 14 C 0.08 1.47 3.49 -26.73 -0.09 1.38 16 15 H 0.10 2.23 8.14 -51.93 -0.42 1.81 16 16 O -0.53 -10.16 10.94 -40.08 -0.44 -10.60 16 17 C 0.03 0.40 4.37 37.16 0.16 0.57 16 18 O -0.30 -4.93 10.10 -24.27 -0.25 -5.17 16 19 C 0.14 2.02 6.69 -39.21 -0.26 1.76 16 20 C -0.22 -2.69 9.04 -39.43 -0.36 -3.05 16 21 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 22 C -0.17 -1.74 9.70 -39.56 -0.38 -2.12 16 23 C -0.05 -0.55 5.88 -104.64 -0.62 -1.17 16 24 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 25 C -0.16 -2.09 9.64 -39.43 -0.38 -2.47 16 26 H 0.18 3.87 7.80 -54.10 -0.42 3.44 16 27 H 0.10 2.44 6.15 -51.93 -0.32 2.12 16 28 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 31 H 0.05 0.74 7.86 -51.93 -0.41 0.34 16 32 H 0.36 5.46 9.05 45.56 0.41 5.88 16 33 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 34 H 0.07 0.86 7.67 -51.93 -0.40 0.46 16 35 H 0.13 1.39 6.30 -52.49 -0.33 1.05 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 40 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -31.61 348.08 -7.65 -39.26 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.20 Total: 7.83 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.05 Total: -14.63 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.08 Total: -37.98 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.68 Total: -15.78 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.04 Total: 16.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.61 -7.65 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281402364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.305 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds